Wall clock time and date at job start Tue Mar 31 2020 12:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 S 1.81400 * 109.47102 * 60.00122 * 3 2 1 5 5 O 1.42104 * 109.46876 * 296.38902 * 4 3 2 6 6 C 1.81397 * 102.99785 * 179.97438 * 4 3 2 7 7 C 1.50710 * 109.47056 * 179.97438 * 6 4 3 8 8 C 1.38636 * 119.74617 * 269.73038 * 7 6 4 9 9 C 1.37625 * 120.24407 * 179.71975 * 8 7 6 10 10 C 1.40713 * 119.74305 * 0.56765 * 9 8 7 11 11 C 1.41393 * 120.24527 * 179.67919 * 10 9 8 12 12 H 1.07993 * 120.00685 * 204.40394 * 11 10 9 13 13 C 1.39949 * 119.99591 * 24.40644 * 11 10 9 14 14 N 1.30823 * 120.00440 * 17.85560 * 13 11 10 15 15 Si 1.86802 * 119.99843 * 197.85944 * 13 11 10 16 16 H 1.48506 * 109.47285 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47402 * 119.99730 * 15 13 11 18 18 H 1.48508 * 109.46834 * 239.99866 * 15 13 11 19 19 C 1.40721 * 119.51231 * 359.70560 * 10 9 8 20 20 C 1.37618 * 119.74445 * 359.97438 * 19 10 9 21 21 C 1.53004 * 109.46992 * 239.99665 * 2 1 3 22 22 C 1.53000 * 109.47465 * 300.00119 * 21 2 1 23 23 C 1.52998 * 109.47075 * 300.00189 * 22 21 2 24 24 C 1.53002 * 109.47349 * 59.99920 * 23 22 21 25 25 C 1.53000 * 109.46922 * 299.99715 * 24 23 22 26 26 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46925 * 299.99741 * 1 2 3 28 28 H 1.08997 * 109.46658 * 60.00093 * 1 2 3 29 29 H 1.08997 * 109.46837 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46733 * 300.00055 * 3 2 1 31 31 H 1.09001 * 109.47356 * 299.99590 * 6 4 3 32 32 H 1.08999 * 109.47147 * 60.00564 * 6 4 3 33 33 H 1.07998 * 119.87549 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.12778 * 180.27628 * 9 8 7 35 35 H 0.96999 * 120.00251 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.12258 * 179.97438 * 19 10 9 37 37 H 1.08000 * 119.87405 * 180.02562 * 20 19 10 38 38 H 1.09000 * 109.46551 * 179.97438 * 21 2 1 39 39 H 1.09003 * 109.46887 * 60.00259 * 21 2 1 40 40 H 1.08994 * 109.47056 * 179.97438 * 22 21 2 41 41 H 1.08997 * 109.46837 * 59.99875 * 22 21 2 42 42 H 1.08995 * 109.46939 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46689 * 299.99951 * 23 22 21 44 44 H 1.08997 * 109.47342 * 59.99837 * 24 23 22 45 45 H 1.08997 * 109.47284 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47696 * 300.00324 * 25 24 23 47 47 H 1.09000 * 109.47310 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 1.4354 2.2976 1.4811 5 8 0.0169 2.3711 1.4397 6 6 2.1333 3.9626 1.3044 7 6 1.7137 4.8103 2.4778 8 6 0.5428 5.5493 2.4088 9 6 0.1470 6.3223 3.4764 10 6 0.9421 6.3700 4.6365 11 6 0.5490 7.1660 5.7370 12 1 1.2897 7.5231 6.4371 13 6 -0.8000 7.4911 5.9190 14 7 -1.7276 6.8002 5.3077 15 14 -1.2761 8.9115 7.0349 16 1 -0.0499 9.5267 7.6036 17 1 -2.0225 9.9281 6.2510 18 1 -2.1342 8.4086 8.1376 19 6 2.1315 5.6202 4.6930 20 6 2.5043 4.8489 3.6160 21 6 2.0400 -0.7213 -1.2492 22 6 1.5300 -2.1638 -1.2492 23 6 2.0400 -2.8851 0.0000 24 6 1.5300 -2.1638 1.2493 25 6 2.0401 -0.7213 1.2493 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.2209 3.8992 1.2721 32 1 1.7679 4.4137 0.3819 33 1 -0.0631 5.5150 1.5154 34 1 -0.7678 6.8938 3.4223 35 1 -2.6626 7.0258 5.4336 36 1 2.7494 5.6499 5.5784 37 1 3.4165 4.2723 3.6573 38 1 3.1300 -0.7209 -1.2494 39 1 1.6767 -0.2075 -2.1392 40 1 1.8930 -2.6775 -2.1394 41 1 0.4401 -2.1638 -1.2492 42 1 1.6770 -3.9128 -0.0002 43 1 3.1300 -2.8850 0.0000 44 1 0.4400 -2.1637 1.2493 45 1 1.8937 -2.6773 2.1393 46 1 3.1301 -0.7213 1.2492 47 1 1.6764 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414289068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:49 Heat of formation + Delta-G solvation = -70.462819 kcal Electronic energy + Delta-G solvation = -24564.688663 eV Core-core repulsion = 21222.436176 eV Total energy + Delta-G solvation = -3342.252487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31892 -39.46023 -36.65620 -35.83424 -34.10651 -32.99181 -31.61897 -31.19505 -29.39963 -28.32088 -27.35770 -25.67496 -23.50942 -22.91233 -22.23351 -21.70572 -19.25206 -19.23239 -18.27092 -17.23672 -16.85933 -16.46156 -16.14390 -15.85228 -15.64138 -15.48930 -15.14150 -15.08014 -14.70314 -14.39508 -14.28177 -13.85512 -13.83154 -13.58318 -13.34799 -13.19082 -12.95191 -12.88135 -12.80255 -12.70312 -12.46332 -12.42295 -12.32546 -12.09981 -11.92186 -11.80607 -11.52860 -11.30676 -11.23526 -11.05763 -11.00664 -10.85340 -10.54550 -9.42458 -9.29191 -8.86363 -8.64388 -6.33083 0.49492 1.09738 1.13723 1.36090 1.51571 1.53598 1.96380 2.18739 2.72981 3.01382 3.68152 3.74438 3.75259 3.87645 4.10475 4.17825 4.28762 4.39468 4.41216 4.46144 4.47749 4.54061 4.60586 4.69617 4.73329 4.76477 4.84627 4.90145 4.94232 5.00465 5.08361 5.14647 5.16106 5.21446 5.24837 5.32085 5.35096 5.36497 5.42988 5.44534 5.49629 5.56833 5.68616 5.70639 5.94498 6.09804 6.18553 6.36419 6.69179 6.92101 7.03022 8.31501 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.002583 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.726724 B =10837.742893 C =11012.000280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.033 4.033 3 C -0.437 4.437 4 S 1.257 4.743 5 O -0.907 6.907 6 C -0.369 4.369 7 C -0.194 4.194 8 C -0.109 4.109 9 C -0.195 4.195 10 C 0.076 3.924 11 C -0.495 4.495 12 H 0.084 0.916 13 C 0.028 3.972 14 N -0.831 5.831 15 Si 0.985 3.015 16 H -0.251 1.251 17 H -0.269 1.269 18 H -0.265 1.265 19 C -0.235 4.235 20 C -0.076 4.076 21 C -0.101 4.101 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.156 0.844 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.286 0.714 36 H 0.113 0.887 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.237 -17.142 -8.911 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.034 4.034 3 C -0.575 4.575 4 S 1.461 4.539 5 O -0.902 6.902 6 C -0.506 4.506 7 C -0.196 4.196 8 C -0.129 4.129 9 C -0.215 4.215 10 C 0.073 3.927 11 C -0.525 4.525 12 H 0.102 0.898 13 C -0.186 4.186 14 N -0.457 5.457 15 Si 0.805 3.195 16 H -0.174 1.174 17 H -0.194 1.194 18 H -0.190 1.190 19 C -0.255 4.255 20 C -0.095 4.095 21 C -0.139 4.139 22 C -0.162 4.162 23 C -0.152 4.152 24 C -0.163 4.163 25 C -0.161 4.161 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.174 0.826 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.171 0.829 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.121 0.879 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.385 -17.538 -8.237 22.473 hybrid contribution -2.110 2.113 -1.728 3.450 sum 9.275 -15.425 -9.965 20.573 Atomic orbital electron populations 1.22398 0.96792 1.02060 1.01770 1.20143 0.93716 0.91736 0.97819 1.27770 1.10896 1.03744 1.15093 1.69765 0.90556 0.90613 1.02919 1.93029 1.29308 1.84483 1.83406 1.26315 1.10632 1.14505 0.99127 1.18753 0.97887 1.05927 0.97083 1.20726 0.96817 0.98465 0.96893 1.21210 1.01848 1.04315 0.94078 1.18037 0.92063 0.90467 0.92092 1.19929 0.93680 1.29303 1.09588 0.89826 1.26899 0.96044 0.98381 0.97270 1.69939 1.02353 1.35513 1.37920 0.85125 0.79205 0.77357 0.77799 1.17413 1.19404 1.19001 1.21316 1.00483 1.03608 1.00049 1.20917 0.98883 0.98016 0.91678 1.21583 1.01579 0.95168 0.95601 1.21607 1.00381 0.95408 0.98770 1.21512 1.01495 0.98577 0.93601 1.21607 1.00403 0.95348 0.98932 1.21847 1.02985 0.95705 0.95606 0.91020 0.92418 0.95118 0.82584 0.91150 0.82570 0.91631 0.90900 0.89144 0.90385 0.86932 0.82923 0.89732 0.93361 0.91171 0.93141 0.91727 0.90529 0.93226 0.90437 0.87910 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 7.26 71.98 0.52 -4.10 16 2 C -0.03 -0.64 0.54 -52.18 -0.03 -0.67 16 3 C -0.44 -8.58 4.93 71.98 0.36 -8.23 16 4 S 1.26 35.40 11.38 -56.49 -0.64 34.76 16 5 O -0.91 -39.43 15.30 -148.98 -2.28 -41.71 16 6 C -0.37 -11.28 6.04 71.24 0.43 -10.85 16 7 C -0.19 -8.19 5.16 -19.67 -0.10 -8.30 16 8 C -0.11 -5.69 9.67 22.22 0.21 -5.47 16 9 C -0.19 -11.19 8.70 22.73 0.20 -10.99 16 10 C 0.08 4.23 5.57 -21.29 -0.12 4.11 16 11 C -0.50 -27.33 9.05 23.46 0.21 -27.12 16 12 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 13 C 0.03 1.49 5.14 85.26 0.44 1.93 16 14 N -0.83 -46.71 10.95 21.83 0.24 -46.47 16 15 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 16 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 19 C -0.24 -11.10 9.80 22.73 0.22 -10.88 16 20 C -0.08 -3.01 9.67 22.22 0.21 -2.80 16 21 C -0.10 -1.57 4.73 30.60 0.14 -1.42 16 22 C -0.12 -1.77 5.65 30.59 0.17 -1.59 16 23 C -0.11 -1.38 5.92 30.59 0.18 -1.20 16 24 C -0.13 -1.83 5.65 30.59 0.17 -1.66 16 25 C -0.12 -1.92 4.49 30.60 0.14 -1.78 16 26 H 0.07 1.68 4.81 -2.38 -0.01 1.67 16 27 H 0.06 1.93 5.21 -2.39 -0.01 1.92 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.16 3.16 8.08 -2.39 -0.02 3.15 16 32 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 33 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.09 5.54 6.16 -2.91 -0.02 5.52 16 35 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 36 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.85 6.43 -2.39 -0.02 0.83 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.88 6.43 -2.39 -0.02 0.86 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 1.03 6.91 -2.39 -0.02 1.01 16 Total: -1.00 -76.66 370.43 3.65 -73.00 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.94 Total: 29.82 kcal Atomic # 6 Polarization: -94.39 SS G_CDS: 3.37 Total: -91.02 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.24 Total: -46.47 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -2.28 Total: -41.71 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 16 Polarization: 35.40 SS G_CDS: -0.64 Total: 34.76 kcal Total: -76.66 3.65 -73.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414289068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.540 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds