Wall clock time and date at job start Tue Mar 31 2020 12:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.35981 * 116.99730 * 179.97438 * 11 10 9 13 13 C 1.38780 * 120.49954 * 359.97438 * 12 11 10 14 14 C 1.38791 * 118.45132 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35567 * 359.97438 * 14 13 12 16 16 N 1.31976 * 120.94967 * 0.02562 * 15 14 13 17 17 C 1.32273 * 121.69025 * 359.71942 * 16 15 14 18 18 N 1.39581 * 119.72818 * 180.26906 * 17 16 15 19 19 C 1.34773 * 120.00188 * 0.26835 * 18 17 16 20 20 O 1.21593 * 119.99684 * 0.02562 * 19 18 17 21 21 N 1.34769 * 120.00430 * 179.97438 * 19 18 17 22 22 C 1.46500 * 120.00402 * 179.97438 * 21 19 18 23 23 H 1.09003 * 110.27001 * 35.63995 * 22 21 19 24 24 C 1.54595 * 110.31066 * 157.83337 * 22 21 19 25 25 C 1.54944 * 102.92002 * 96.96012 * 24 22 21 26 26 N 1.48532 * 103.22599 * 37.41857 * 25 24 22 27 27 C 1.47904 * 105.81614 * 320.78882 * 26 25 24 28 28 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 29 29 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 30 30 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 31 31 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 32 32 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 33 33 H 1.08004 * 120.77670 * 359.95669 * 13 12 11 34 34 H 1.07994 * 120.32501 * 180.02562 * 14 13 12 35 35 H 1.07998 * 119.52618 * 180.02562 * 15 14 13 36 36 H 0.96995 * 119.99888 * 180.26593 * 18 17 16 37 37 H 0.97000 * 120.00138 * 0.02562 * 21 19 18 38 38 H 1.09000 * 110.72455 * 215.31619 * 24 22 21 39 39 H 1.08999 * 110.72508 * 338.60876 * 24 22 21 40 40 H 1.08994 * 110.66796 * 278.97899 * 25 24 22 41 41 H 1.08995 * 110.80771 * 155.91662 * 25 24 22 42 42 H 1.00891 * 111.00441 * 81.30514 * 26 25 24 43 43 H 1.08998 * 109.91670 * 265.97474 * 27 26 25 44 44 H 1.09011 * 109.91398 * 144.68880 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 8 1.5305 -4.8996 -0.0243 12 6 2.2711 -6.0401 -0.0297 13 6 3.6576 -5.9795 -0.0289 14 6 4.3714 -7.1698 -0.0341 15 6 3.6875 -8.3692 -0.0393 16 7 2.3680 -8.3982 -0.0399 17 6 1.6486 -7.2882 -0.0301 18 7 0.2550 -7.3666 -0.0255 19 6 -0.3522 -8.5698 -0.0256 20 8 0.3139 -9.5870 -0.0292 21 7 -1.6978 -8.6456 -0.0206 22 6 -2.3579 -9.9534 -0.0213 23 1 -1.7839 -10.6664 0.5706 24 6 -3.7962 -9.8288 0.5316 25 6 -4.6537 -9.7223 -0.7546 26 7 -3.9738 -10.6504 -1.6941 27 6 -2.5244 -10.4674 -1.4633 28 1 -0.4850 0.8401 0.0040 29 1 0.6240 -2.5614 0.8771 30 1 0.6246 -2.5525 -0.9029 31 1 2.8725 -3.6002 -0.9065 32 1 2.8711 -3.6087 0.8735 33 1 4.1692 -5.0284 -0.0247 34 1 5.4513 -7.1580 -0.0332 35 1 4.2401 -9.2971 -0.0429 36 1 -0.2763 -6.5552 -0.0222 37 1 -2.2293 -7.8341 -0.0173 38 1 -4.0677 -10.7159 1.1038 39 1 -3.8993 -8.9299 1.1393 40 1 -4.6403 -8.7039 -1.1426 41 1 -5.6768 -10.0473 -0.5658 42 1 -4.2496 -11.6055 -1.5220 43 1 -2.1259 -9.7362 -2.1665 44 1 -2.0067 -11.4195 -1.5803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415496452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:53 Heat of formation + Delta-G solvation = -15.603632 kcal Electronic energy + Delta-G solvation = -26237.807311 eV Core-core repulsion = 22383.933234 eV Total energy + Delta-G solvation = -3853.874077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95248 -39.91494 -38.45653 -37.71607 -34.76448 -33.99831 -33.47805 -31.58299 -30.61923 -29.75026 -29.16569 -28.03250 -25.41567 -23.77413 -22.81551 -22.21626 -21.52354 -20.74202 -20.54524 -18.83196 -18.08278 -17.46719 -16.80281 -16.21044 -15.98515 -15.93141 -15.86721 -15.32424 -14.73985 -14.58860 -14.44629 -14.25911 -14.02116 -13.89223 -13.52313 -12.98830 -12.80348 -12.40454 -12.17628 -12.00401 -11.95538 -11.88911 -11.58380 -11.32735 -11.08118 -10.98192 -10.71358 -10.69471 -10.38187 -10.04543 -9.78733 -9.47021 -9.43479 -9.18527 -9.05933 -8.81194 -8.52711 -7.62204 -6.18705 -4.23651 1.28466 1.47851 2.42045 3.19869 3.23331 3.28055 3.29112 3.54250 3.82631 3.96721 4.06866 4.26448 4.33291 4.58515 4.66972 4.69305 4.96367 4.97623 5.08541 5.10468 5.18162 5.26064 5.28428 5.44840 5.49246 5.53616 5.70571 5.81302 5.86349 5.90235 6.06646 6.19781 6.23453 6.38135 6.46155 6.54268 6.58584 6.83350 6.99726 7.34874 7.51876 7.62730 7.72511 7.87148 8.13668 8.26150 8.62246 8.81334 9.41258 10.92699 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012041 B = 0.002803 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.901089 B = 9987.092426 C =12083.842013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.065 3.935 13 C -0.147 4.147 14 C -0.163 4.163 15 C 0.076 3.924 16 N -0.442 5.442 17 C 0.347 3.653 18 N -0.661 5.661 19 C 0.697 3.303 20 O -0.535 6.535 21 N -0.738 5.738 22 C 0.137 3.863 23 H 0.095 0.905 24 C -0.167 4.167 25 C 0.040 3.960 26 N -0.674 5.674 27 C 0.031 3.969 28 H 0.265 0.735 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.420 0.580 37 H 0.397 0.603 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.337 0.663 43 H 0.083 0.917 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 -19.318 0.572 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.013 3.987 13 C -0.173 4.173 14 C -0.184 4.184 15 C -0.080 4.080 16 N -0.156 5.156 17 C 0.113 3.887 18 N -0.310 5.310 19 C 0.397 3.603 20 O -0.407 6.407 21 N -0.395 5.395 22 C 0.030 3.970 23 H 0.113 0.887 24 C -0.207 4.207 25 C -0.089 4.089 26 N -0.301 5.301 27 C -0.100 4.100 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.173 0.827 36 H 0.257 0.743 37 H 0.231 0.769 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.101 0.899 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.079 -20.535 -0.070 20.936 hybrid contribution 0.812 2.309 0.929 2.618 sum -3.267 -18.226 0.859 18.536 Atomic orbital electron populations 1.69953 1.06109 1.27194 1.49454 1.24978 0.94916 0.99403 0.94778 0.86542 0.79523 0.82527 0.78769 1.21080 1.20064 1.20048 1.20914 0.93037 0.90153 1.52613 0.92383 1.19115 0.94122 0.88917 0.98826 1.23388 0.97236 0.80328 0.99824 1.86096 1.36239 1.12901 1.87701 1.19542 0.91125 0.86978 1.01058 1.21587 0.92160 1.00344 1.03231 1.21881 1.01166 0.92540 1.02844 1.22412 0.88797 0.97853 0.98985 1.67630 1.07726 1.26789 1.13488 1.17483 0.83874 0.86905 1.00456 1.42485 1.04073 1.08938 1.75543 1.15950 0.82006 0.83853 0.78519 1.91023 1.63023 1.32957 1.53693 1.45199 1.04633 1.09033 1.80601 1.22048 0.92848 0.84761 0.97351 0.88711 1.23417 0.94278 1.03673 0.99289 1.23171 0.97467 0.98697 0.89578 1.62712 1.04777 1.09973 1.52638 1.23284 0.89013 1.02187 0.95557 0.92585 0.95409 0.95376 0.92956 0.92960 0.83759 0.84832 0.82676 0.74257 0.76851 0.89965 0.89740 0.89912 0.90388 0.84765 0.89875 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.30 4.70 37.16 0.17 1.48 16 11 O -0.32 -5.83 9.39 -19.68 -0.18 -6.01 16 12 C 0.06 1.09 6.72 -38.92 -0.26 0.82 16 13 C -0.15 -2.15 9.14 -39.18 -0.36 -2.51 16 14 C -0.16 -2.05 10.10 -39.44 -0.40 -2.45 16 15 C 0.08 1.05 11.17 -17.55 -0.20 0.86 16 16 N -0.44 -7.52 7.87 -12.22 -0.10 -7.62 16 17 C 0.35 5.84 7.45 -154.43 -1.15 4.69 16 18 N -0.66 -9.82 5.40 -15.67 -0.08 -9.90 16 19 C 0.70 10.24 8.52 -86.93 -0.74 9.49 16 20 O -0.54 -9.66 14.29 5.28 0.08 -9.59 16 21 N -0.74 -7.80 4.99 -57.35 -0.29 -8.09 16 22 C 0.14 1.27 3.30 -66.58 -0.22 1.05 16 23 H 0.09 1.02 7.64 -51.93 -0.40 0.62 16 24 C -0.17 -1.09 6.68 -24.87 -0.17 -1.25 16 25 C 0.04 0.27 7.55 -1.89 -0.01 0.26 16 26 N -0.67 -5.46 7.51 -110.08 -0.83 -6.28 16 27 C 0.03 0.29 7.31 -2.75 -0.02 0.27 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 32 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 33 H 0.14 1.96 6.44 -52.48 -0.34 1.62 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.42 5.52 8.06 -40.82 -0.33 5.20 16 37 H 0.40 3.36 8.55 -40.82 -0.35 3.01 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.52 7.96 -51.93 -0.41 0.11 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.34 2.15 8.92 -39.30 -0.35 1.80 16 43 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 44 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -32.88 368.05 -10.36 -43.24 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.31 Total: 7.44 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.91 Total: 0.41 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.56 Total: -56.64 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.11 Total: -15.60 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.88 -10.36 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415496452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.637 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds