Wall clock time and date at job start Tue Mar 31 2020 12:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.35981 * 116.99730 * 179.97438 * 11 10 9 13 13 C 1.38780 * 120.49954 * 359.97438 * 12 11 10 14 14 C 1.38791 * 118.45132 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35567 * 359.97438 * 14 13 12 16 16 N 1.31976 * 120.94967 * 0.02562 * 15 14 13 17 17 C 1.32273 * 121.69025 * 359.71942 * 16 15 14 18 18 N 1.39581 * 119.72818 * 180.26906 * 17 16 15 19 19 C 1.34773 * 120.00188 * 0.26835 * 18 17 16 20 20 O 1.21593 * 119.99684 * 0.02562 * 19 18 17 21 21 N 1.34769 * 120.00430 * 179.97438 * 19 18 17 22 22 C 1.46500 * 120.00402 * 179.97438 * 21 19 18 23 23 H 1.09003 * 110.27001 * 35.63995 * 22 21 19 24 24 C 1.54595 * 110.31066 * 157.83337 * 22 21 19 25 25 C 1.54944 * 102.92002 * 96.96012 * 24 22 21 26 26 N 1.48532 * 103.22599 * 37.41857 * 25 24 22 27 27 C 1.47904 * 105.81614 * 320.78882 * 26 25 24 28 28 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 29 29 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 30 30 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 31 31 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 32 32 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 33 33 H 1.08004 * 120.77670 * 359.95669 * 13 12 11 34 34 H 1.07994 * 120.32501 * 180.02562 * 14 13 12 35 35 H 1.07998 * 119.52618 * 180.02562 * 15 14 13 36 36 H 0.96995 * 119.99888 * 180.26593 * 18 17 16 37 37 H 0.97000 * 120.00138 * 0.02562 * 21 19 18 38 38 H 1.09000 * 110.72455 * 215.31619 * 24 22 21 39 39 H 1.08999 * 110.72508 * 338.60876 * 24 22 21 40 40 H 1.08994 * 110.66796 * 278.97899 * 25 24 22 41 41 H 1.08995 * 110.80771 * 155.91662 * 25 24 22 42 42 H 1.00891 * 111.00441 * 81.30514 * 26 25 24 43 43 H 1.08998 * 109.91670 * 265.97474 * 27 26 25 44 44 H 1.09011 * 109.91398 * 144.68880 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 8 1.5305 -4.8996 -0.0243 12 6 2.2711 -6.0401 -0.0297 13 6 3.6576 -5.9795 -0.0289 14 6 4.3714 -7.1698 -0.0341 15 6 3.6875 -8.3692 -0.0393 16 7 2.3680 -8.3982 -0.0399 17 6 1.6486 -7.2882 -0.0301 18 7 0.2550 -7.3666 -0.0255 19 6 -0.3522 -8.5698 -0.0256 20 8 0.3139 -9.5870 -0.0292 21 7 -1.6978 -8.6456 -0.0206 22 6 -2.3579 -9.9534 -0.0213 23 1 -1.7839 -10.6664 0.5706 24 6 -3.7962 -9.8288 0.5316 25 6 -4.6537 -9.7223 -0.7546 26 7 -3.9738 -10.6504 -1.6941 27 6 -2.5244 -10.4674 -1.4633 28 1 -0.4850 0.8401 0.0040 29 1 0.6240 -2.5614 0.8771 30 1 0.6246 -2.5525 -0.9029 31 1 2.8725 -3.6002 -0.9065 32 1 2.8711 -3.6087 0.8735 33 1 4.1692 -5.0284 -0.0247 34 1 5.4513 -7.1580 -0.0332 35 1 4.2401 -9.2971 -0.0429 36 1 -0.2763 -6.5552 -0.0222 37 1 -2.2293 -7.8341 -0.0173 38 1 -4.0677 -10.7159 1.1038 39 1 -3.8993 -8.9299 1.1393 40 1 -4.6403 -8.7039 -1.1426 41 1 -5.6768 -10.0473 -0.5658 42 1 -4.2496 -11.6055 -1.5220 43 1 -2.1259 -9.7362 -2.1665 44 1 -2.0067 -11.4195 -1.5803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415496452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:52 Heat of formation + Delta-G solvation = -39.780973 kcal Electronic energy + Delta-G solvation = -26238.855719 eV Core-core repulsion = 22383.933234 eV Total energy + Delta-G solvation = -3854.922485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.10944 -40.96338 -39.43665 -38.94049 -35.94348 -35.43886 -34.95989 -32.86927 -32.23156 -30.67522 -30.14426 -28.89196 -27.15946 -25.10397 -24.04629 -23.01902 -22.77908 -21.98742 -21.49071 -19.97663 -19.33170 -18.77120 -18.02572 -17.58732 -17.19330 -17.12246 -16.87456 -16.52428 -16.48411 -15.72567 -15.46092 -15.23529 -15.13154 -14.79051 -14.70417 -14.34819 -14.15300 -13.70097 -13.59068 -13.28661 -12.89378 -12.80212 -12.72311 -12.64544 -12.44748 -12.15301 -12.03094 -11.86634 -11.70488 -11.65145 -11.55834 -11.41760 -10.59949 -10.45880 -10.29234 -10.23297 -9.55471 -8.81972 -8.25486 -6.37996 0.15233 0.30992 1.38743 1.42676 1.45285 1.53072 2.06586 2.12180 2.44741 2.90555 2.91725 3.09780 3.27361 3.55744 3.62585 3.87331 3.92044 3.98441 4.04865 4.14390 4.27797 4.30101 4.34454 4.42524 4.48517 4.63584 4.75235 4.84213 4.89878 4.97135 5.02797 5.11056 5.14732 5.27616 5.31710 5.43119 5.50728 5.52592 5.70076 5.72463 5.81909 6.08381 6.35154 6.43977 6.69393 6.76686 7.15048 7.32001 7.50815 8.86929 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012041 B = 0.002803 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.901089 B = 9987.092426 C =12083.842013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.031 3.969 10 C 0.084 3.916 11 O -0.329 6.329 12 C 0.039 3.961 13 C -0.147 4.147 14 C -0.147 4.147 15 C 0.074 3.926 16 N -0.472 5.472 17 C 0.328 3.672 18 N -0.661 5.661 19 C 0.694 3.306 20 O -0.572 6.572 21 N -0.723 5.723 22 C 0.134 3.866 23 H 0.080 0.920 24 C -0.154 4.154 25 C 0.041 3.959 26 N -0.681 5.681 27 C 0.037 3.963 28 H 0.266 0.734 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.186 0.814 36 H 0.424 0.576 37 H 0.408 0.592 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.349 0.651 43 H 0.059 0.941 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 -19.494 0.885 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.210 1.210 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.006 4.006 10 C 0.009 3.991 11 O -0.243 6.243 12 C -0.012 4.012 13 C -0.173 4.173 14 C -0.168 4.168 15 C -0.083 4.083 16 N -0.187 5.187 17 C 0.095 3.905 18 N -0.311 5.311 19 C 0.394 3.606 20 O -0.447 6.447 21 N -0.380 5.380 22 C 0.027 3.973 23 H 0.098 0.902 24 C -0.194 4.194 25 C -0.088 4.088 26 N -0.309 5.309 27 C -0.095 4.095 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.193 0.807 35 H 0.202 0.798 36 H 0.262 0.738 37 H 0.245 0.755 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.165 0.835 43 H 0.077 0.923 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.785 -20.718 0.244 20.906 hybrid contribution 0.417 2.229 0.814 2.409 sum -2.368 -18.490 1.058 18.671 Atomic orbital electron populations 1.70093 1.07896 1.28183 1.50649 1.25957 0.95762 1.03425 0.94302 0.85424 0.78192 0.77635 0.79362 1.21029 1.18923 1.18976 1.21380 0.93878 0.91073 1.52016 0.91097 1.18933 0.94506 0.90985 0.96226 1.22952 0.95613 0.79632 1.00874 1.86023 1.36627 1.13013 1.88619 1.19685 0.92140 0.86053 1.03291 1.21889 0.91338 1.01848 1.02269 1.22269 1.03059 0.91038 1.00427 1.23059 0.88061 0.99772 0.97358 1.67681 1.09390 1.27103 1.14562 1.17683 0.84559 0.87056 1.01164 1.42514 1.03913 1.09215 1.75455 1.16133 0.82962 0.83273 0.78250 1.90980 1.64136 1.33989 1.55580 1.45153 1.03359 1.10243 1.79219 1.22175 0.94175 0.83668 0.97301 0.90184 1.23375 0.91829 1.04806 0.99358 1.23218 0.98380 0.98119 0.89059 1.62661 1.03756 1.11115 1.53391 1.23104 0.90097 1.01294 0.94989 0.92523 0.98027 0.98069 0.91840 0.91779 0.82514 0.80689 0.79752 0.73781 0.75543 0.88321 0.89017 0.90639 0.88278 0.83476 0.92295 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -29.11 9.11 25.60 0.23 -28.88 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.55 5.34 29.85 0.16 1.71 16 10 C 0.08 3.28 4.70 71.98 0.34 3.62 16 11 O -0.33 -12.32 9.39 -93.34 -0.88 -13.20 16 12 C 0.04 1.31 6.72 22.70 0.15 1.46 16 13 C -0.15 -4.03 9.14 22.53 0.21 -3.82 16 14 C -0.15 -3.26 10.10 22.36 0.23 -3.03 16 15 C 0.07 1.90 11.17 84.63 0.95 2.85 16 16 N -0.47 -15.98 7.87 -192.57 -1.52 -17.50 16 17 C 0.33 11.20 7.45 132.99 0.99 12.19 16 18 N -0.66 -20.40 5.40 -321.76 -1.74 -22.14 16 19 C 0.69 21.12 8.52 179.06 1.53 22.64 16 20 O -0.57 -21.34 14.29 -4.01 -0.06 -21.40 16 21 N -0.72 -15.69 4.99 -453.62 -2.26 -17.95 16 22 C 0.13 2.49 3.30 45.87 0.15 2.64 16 23 H 0.08 1.77 7.64 -2.39 -0.02 1.75 16 24 C -0.15 -1.80 6.68 31.80 0.21 -1.59 16 25 C 0.04 0.49 7.55 86.65 0.65 1.15 16 26 N -0.68 -10.51 7.51 -502.19 -3.77 -14.28 16 27 C 0.04 0.71 7.31 86.44 0.63 1.34 16 28 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 2.33 7.69 -2.38 -0.02 2.31 16 32 H 0.06 2.34 7.70 -2.39 -0.02 2.32 16 33 H 0.16 3.85 6.44 -2.91 -0.02 3.83 16 34 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 36 H 0.42 11.78 8.06 -92.71 -0.75 11.03 16 37 H 0.41 7.01 8.55 -92.71 -0.79 6.22 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.98 7.96 -2.39 -0.02 0.96 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.35 4.03 8.92 -89.70 -0.80 3.23 16 43 H 0.06 1.44 7.92 -2.39 -0.02 1.42 16 44 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -72.78 368.05 -2.31 -75.09 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -1.29 Total: 28.47 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.89 Total: 12.99 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -9.00 Total: -125.87 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.93 Total: -34.59 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -72.78 -2.31 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415496452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.309 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds