Wall clock time and date at job start Tue Mar 31 2020 12:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00220 * 2 1 4 4 O 1.20828 * 119.99741 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00368 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47367 * 179.97438 * 5 3 2 7 7 C 1.38286 * 119.92674 * 89.99712 * 6 5 3 8 8 C 1.38109 * 120.06571 * 179.97438 * 7 6 5 9 9 C 1.38873 * 119.93104 * 0.27772 * 8 7 6 10 10 N 1.39927 * 120.07015 * 179.72655 * 9 8 7 11 11 C 1.34778 * 120.00386 * 33.28489 * 10 9 8 12 12 O 1.21296 * 119.99695 * 5.27705 * 11 10 9 13 13 C 1.50692 * 120.00463 * 185.27554 * 11 10 9 14 14 H 1.09001 * 109.46788 * 319.99988 * 13 11 10 15 15 N 1.46892 * 109.47368 * 199.99717 * 13 11 10 16 16 C 1.53007 * 109.46955 * 79.99815 * 13 11 10 17 17 C 1.53001 * 109.46909 * 185.00311 * 16 13 11 18 18 C 1.50702 * 109.46772 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00261 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99660 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99734 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47436 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47275 * 119.99802 * 22 20 18 25 25 H 1.48499 * 109.47354 * 239.99942 * 22 20 18 26 26 C 1.38874 * 119.85686 * 359.53121 * 9 8 7 27 27 C 1.38107 * 119.92855 * 0.42747 * 26 9 8 28 28 H 1.08995 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47270 * 300.00444 * 1 2 3 30 30 H 1.08997 * 109.47067 * 60.00284 * 1 2 3 31 31 H 1.09000 * 109.47326 * 59.98849 * 5 3 2 32 32 H 1.09006 * 109.46570 * 299.99233 * 5 3 2 33 33 H 1.07999 * 119.96692 * 359.97438 * 7 6 5 34 34 H 1.08006 * 120.03540 * 179.97438 * 8 7 6 35 35 H 0.96996 * 119.99867 * 213.28604 * 10 9 8 36 36 H 1.00900 * 111.00126 * 299.99882 * 15 13 11 37 37 H 1.00903 * 111.00031 * 63.95457 * 15 13 11 38 38 H 1.08998 * 109.46958 * 305.00120 * 16 13 11 39 39 H 1.08999 * 109.47286 * 65.00463 * 16 13 11 40 40 H 1.08998 * 109.47155 * 299.99688 * 17 16 13 41 41 H 1.08999 * 109.47023 * 59.99990 * 17 16 13 42 42 H 0.96996 * 120.00566 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.03265 * 180.18963 * 26 9 8 44 44 H 1.08004 * 119.96628 * 179.78625 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7200 -0.0011 7 6 4.1897 3.3819 1.1971 8 6 4.5818 4.7062 1.2000 9 6 4.7736 5.3746 -0.0020 10 7 5.1653 6.7179 -0.0025 11 6 5.9713 7.1853 0.9714 12 8 6.4345 6.4228 1.7932 13 6 6.2972 8.6550 1.0393 14 1 6.4561 9.0388 0.0316 15 7 7.5162 8.8500 1.8355 16 6 5.1353 9.4053 1.6936 17 6 5.4107 10.9096 1.6502 18 6 4.2665 11.6486 2.2952 19 1 3.4267 11.1001 2.6956 20 6 4.2919 13.0249 2.3741 21 7 5.3147 13.6928 1.8869 22 14 2.8734 13.9408 3.1729 23 1 1.8537 12.9663 3.6372 24 1 3.3776 14.7204 4.3319 25 1 2.2609 14.8641 2.1842 26 6 4.5798 4.7059 -1.2036 27 6 4.1885 3.3814 -1.1997 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9558 0.7808 -0.8907 32 1 3.9564 0.7807 0.8893 33 1 4.0360 2.8628 2.1316 34 1 4.7343 5.2228 2.1362 35 1 4.8568 7.3128 -0.7037 36 1 7.3942 8.5020 2.7746 37 1 8.3119 8.4179 1.3902 38 1 4.2133 9.1890 1.1539 39 1 5.0333 9.0844 2.7303 40 1 6.3327 11.1260 2.1898 41 1 5.5126 11.2305 0.6135 42 1 5.3328 14.6610 1.9427 43 1 4.7311 5.2221 -2.1401 44 1 4.0342 2.8617 -2.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424071647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:02 Heat of formation + Delta-G solvation = -106.629172 kcal Electronic energy + Delta-G solvation = -25665.726574 eV Core-core repulsion = 21775.612582 eV Total energy + Delta-G solvation = -3890.113992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95838 -40.51064 -38.84924 -36.81979 -35.47367 -35.02035 -32.84720 -32.23366 -31.09773 -30.15315 -28.77630 -27.26572 -26.08277 -23.92535 -23.13788 -22.24238 -21.00436 -20.54767 -19.84554 -17.98584 -17.90013 -17.24913 -16.95543 -16.85323 -16.21823 -15.74986 -15.56381 -15.27083 -14.76487 -14.42073 -14.33924 -13.97243 -13.87000 -13.83244 -13.55522 -13.40974 -12.76960 -12.50134 -12.41440 -12.35512 -12.09303 -11.92201 -11.59460 -11.35142 -11.16531 -10.92480 -10.85392 -10.71909 -10.56492 -10.37494 -10.14558 -9.83692 -9.41801 -9.05367 -9.00927 -8.43135 -8.26154 -8.15814 -5.95698 -3.97842 1.01046 1.29642 1.89041 2.37093 2.65809 3.06877 3.33238 3.40922 3.45048 3.69138 4.27031 4.48527 4.52237 4.63270 4.71417 4.73162 4.80656 4.82228 4.89574 4.99620 5.05604 5.15502 5.24152 5.39451 5.42259 5.48751 5.51667 5.73553 5.86117 5.99074 6.10292 6.21795 6.36129 6.37114 6.42334 6.59098 6.90487 7.03262 7.25027 7.42436 7.44584 7.71320 7.74230 7.92918 8.09491 8.11401 8.45955 9.10137 9.65550 11.15169 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.002250 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.290699 B =12443.329599 C =13597.747373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.457 3.543 4 O -0.493 6.493 5 C -0.066 4.066 6 C -0.106 4.106 7 C -0.081 4.081 8 C -0.120 4.120 9 C 0.161 3.839 10 N -0.675 5.675 11 C 0.483 3.517 12 O -0.533 6.533 13 C 0.081 3.919 14 H 0.101 0.899 15 N -0.805 5.805 16 C -0.096 4.096 17 C 0.031 3.969 18 C -0.522 4.522 19 H 0.053 0.947 20 C 0.057 3.943 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C -0.149 4.149 27 C -0.082 4.082 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.414 0.586 36 H 0.349 0.651 37 H 0.335 0.665 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.014 0.986 42 H 0.259 0.741 43 H 0.127 0.873 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -28.217 -7.861 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.299 3.701 4 O -0.379 6.379 5 C -0.104 4.104 6 C -0.107 4.107 7 C -0.100 4.100 8 C -0.140 4.140 9 C 0.066 3.934 10 N -0.320 5.320 11 C 0.270 3.730 12 O -0.408 6.408 13 C -0.035 4.035 14 H 0.119 0.881 15 N -0.333 5.333 16 C -0.135 4.135 17 C -0.006 4.006 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.169 4.169 27 C -0.101 4.101 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.154 0.846 35 H 0.251 0.749 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.145 0.855 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.045 -27.393 -7.366 28.529 hybrid contribution -1.211 -0.139 0.080 1.222 sum -4.256 -27.532 -7.286 28.796 Atomic orbital electron populations 1.23264 0.76237 1.03645 1.02705 1.86495 1.23542 1.33641 1.84412 1.23820 0.92082 0.81379 0.72849 1.90729 1.66995 1.36225 1.43967 1.20246 0.87628 0.95898 1.06607 1.19134 1.03652 0.94050 0.93890 1.20837 0.97743 0.94184 0.97223 1.21135 0.99969 0.94968 0.97916 1.17900 0.96784 0.84725 0.94018 1.43886 1.49274 1.08836 1.29976 1.23102 0.76575 0.93622 0.79653 1.90662 1.51698 1.59048 1.39408 1.21889 0.94318 0.86776 1.00547 0.88110 1.58986 1.03291 1.64599 1.06427 1.21695 0.92907 0.99799 0.99072 1.19024 0.97714 0.86485 0.97376 1.21306 1.05086 0.91542 1.38120 0.92910 1.24996 0.95878 0.97821 0.95691 1.69979 1.29842 1.07179 1.46138 0.86585 0.82649 0.79871 0.79170 1.19851 1.21039 1.21092 1.20850 1.04632 0.94818 0.96624 1.20692 0.98309 0.93916 0.97157 0.88098 0.91831 0.91864 0.86809 0.86778 0.85887 0.84584 0.74932 0.83695 0.85294 0.92673 0.92696 0.94584 0.96803 0.93134 0.85487 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.00 10.56 -39.25 -0.41 -3.41 16 3 C 0.46 4.35 7.95 36.01 0.29 4.64 16 4 O -0.49 -6.51 15.78 -18.75 -0.30 -6.81 16 5 C -0.07 -0.47 5.94 -29.03 -0.17 -0.64 16 6 C -0.11 -1.07 4.38 -104.59 -0.46 -1.53 16 7 C -0.08 -0.94 9.69 -39.61 -0.38 -1.33 16 8 C -0.12 -1.67 8.66 -39.39 -0.34 -2.01 16 9 C 0.16 2.12 6.28 -83.69 -0.53 1.59 16 10 N -0.67 -8.69 5.34 -9.86 -0.05 -8.74 16 11 C 0.48 7.36 6.81 -10.99 -0.07 7.28 16 12 O -0.53 -9.30 13.94 5.54 0.08 -9.22 16 13 C 0.08 1.30 3.15 -68.87 -0.22 1.08 16 14 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 15 N -0.81 -13.04 8.44 -5.66 -0.05 -13.09 16 16 C -0.10 -1.90 4.78 -26.73 -0.13 -2.03 16 17 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.15 -1.62 9.96 -39.39 -0.39 -2.01 16 27 C -0.08 -0.81 9.69 -39.62 -0.38 -1.20 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.11 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 2.12 6.42 -52.48 -0.34 1.78 16 35 H 0.41 4.32 8.82 -40.82 -0.36 3.96 16 36 H 0.35 5.72 8.58 -39.29 -0.34 5.38 16 37 H 0.34 4.68 9.06 -39.29 -0.36 4.32 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -35.29 379.48 -7.97 -43.27 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.40 Total: 9.26 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.27 Total: -7.68 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.64 Total: -47.88 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.63 Total: -19.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.29 -7.97 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.364 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds