Wall clock time and date at job start Tue Mar 31 2020 12:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00220 * 2 1 4 4 O 1.20828 * 119.99741 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00368 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47367 * 179.97438 * 5 3 2 7 7 C 1.38286 * 119.92674 * 89.99712 * 6 5 3 8 8 C 1.38109 * 120.06571 * 179.97438 * 7 6 5 9 9 C 1.38873 * 119.93104 * 0.27772 * 8 7 6 10 10 N 1.39927 * 120.07015 * 179.72655 * 9 8 7 11 11 C 1.34778 * 120.00386 * 33.28489 * 10 9 8 12 12 O 1.21296 * 119.99695 * 5.27705 * 11 10 9 13 13 C 1.50692 * 120.00463 * 185.27554 * 11 10 9 14 14 H 1.09001 * 109.46788 * 319.99988 * 13 11 10 15 15 N 1.46892 * 109.47368 * 199.99717 * 13 11 10 16 16 C 1.53007 * 109.46955 * 79.99815 * 13 11 10 17 17 C 1.53001 * 109.46909 * 185.00311 * 16 13 11 18 18 C 1.50702 * 109.46772 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00261 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99660 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99734 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47436 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47275 * 119.99802 * 22 20 18 25 25 H 1.48499 * 109.47354 * 239.99942 * 22 20 18 26 26 C 1.38874 * 119.85686 * 359.53121 * 9 8 7 27 27 C 1.38107 * 119.92855 * 0.42747 * 26 9 8 28 28 H 1.08995 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47270 * 300.00444 * 1 2 3 30 30 H 1.08997 * 109.47067 * 60.00284 * 1 2 3 31 31 H 1.09000 * 109.47326 * 59.98849 * 5 3 2 32 32 H 1.09006 * 109.46570 * 299.99233 * 5 3 2 33 33 H 1.07999 * 119.96692 * 359.97438 * 7 6 5 34 34 H 1.08006 * 120.03540 * 179.97438 * 8 7 6 35 35 H 0.96996 * 119.99867 * 213.28604 * 10 9 8 36 36 H 1.00900 * 111.00126 * 299.99882 * 15 13 11 37 37 H 1.00903 * 111.00031 * 63.95457 * 15 13 11 38 38 H 1.08998 * 109.46958 * 305.00120 * 16 13 11 39 39 H 1.08999 * 109.47286 * 65.00463 * 16 13 11 40 40 H 1.08998 * 109.47155 * 299.99688 * 17 16 13 41 41 H 1.08999 * 109.47023 * 59.99990 * 17 16 13 42 42 H 0.96996 * 120.00566 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.03265 * 180.18963 * 26 9 8 44 44 H 1.08004 * 119.96628 * 179.78625 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7200 -0.0011 7 6 4.1897 3.3819 1.1971 8 6 4.5818 4.7062 1.2000 9 6 4.7736 5.3746 -0.0020 10 7 5.1653 6.7179 -0.0025 11 6 5.9713 7.1853 0.9714 12 8 6.4345 6.4228 1.7932 13 6 6.2972 8.6550 1.0393 14 1 6.4561 9.0388 0.0316 15 7 7.5162 8.8500 1.8355 16 6 5.1353 9.4053 1.6936 17 6 5.4107 10.9096 1.6502 18 6 4.2665 11.6486 2.2952 19 1 3.4267 11.1001 2.6956 20 6 4.2919 13.0249 2.3741 21 7 5.3147 13.6928 1.8869 22 14 2.8734 13.9408 3.1729 23 1 1.8537 12.9663 3.6372 24 1 3.3776 14.7204 4.3319 25 1 2.2609 14.8641 2.1842 26 6 4.5798 4.7059 -1.2036 27 6 4.1885 3.3814 -1.1997 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9558 0.7808 -0.8907 32 1 3.9564 0.7807 0.8893 33 1 4.0360 2.8628 2.1316 34 1 4.7343 5.2228 2.1362 35 1 4.8568 7.3128 -0.7037 36 1 7.3942 8.5020 2.7746 37 1 8.3119 8.4179 1.3902 38 1 4.2133 9.1890 1.1539 39 1 5.0333 9.0844 2.7303 40 1 6.3327 11.1260 2.1898 41 1 5.5126 11.2305 0.6135 42 1 5.3328 14.6610 1.9427 43 1 4.7311 5.2221 -2.1401 44 1 4.0342 2.8617 -2.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424071647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:01 Heat of formation + Delta-G solvation = -130.998556 kcal Electronic energy + Delta-G solvation = -25666.783310 eV Core-core repulsion = 21775.612582 eV Total energy + Delta-G solvation = -3891.170728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84804 -41.43880 -39.79808 -37.56794 -36.90218 -36.13555 -34.84704 -33.04634 -32.00636 -31.90381 -29.54596 -28.33615 -27.36633 -25.49253 -24.05839 -23.26260 -22.31646 -21.56843 -21.12669 -19.02682 -18.65199 -18.52406 -18.13488 -17.63986 -17.55581 -17.03199 -16.62466 -16.38905 -16.20842 -15.83188 -15.48053 -15.05490 -14.75668 -14.60434 -14.54389 -14.32031 -14.22919 -13.86694 -13.67763 -13.43917 -13.07080 -13.00968 -12.83958 -12.71282 -12.50047 -12.27263 -12.17777 -11.79683 -11.76871 -11.70574 -11.62880 -11.32308 -11.21753 -10.99407 -10.50589 -9.92097 -9.68978 -9.09903 -8.15395 -6.25232 0.12143 0.43180 1.19872 1.38954 1.40285 1.41704 1.53554 1.85634 1.99959 2.43278 2.83494 3.17639 3.47361 3.60207 3.70660 3.87231 4.01256 4.03854 4.05733 4.25637 4.26224 4.31744 4.33416 4.40223 4.53569 4.66860 4.67588 4.72480 4.74698 4.89696 5.03595 5.19759 5.21910 5.32037 5.40400 5.47826 5.54721 5.56091 5.82937 5.97277 6.00170 6.05735 6.29085 6.32907 6.49308 6.74772 6.93287 6.98317 7.42712 8.95839 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.002250 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.290699 B =12443.329599 C =13597.747373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.538 6.538 5 C -0.063 4.063 6 C -0.103 4.103 7 C -0.093 4.093 8 C -0.146 4.146 9 C 0.134 3.866 10 N -0.663 5.663 11 C 0.489 3.511 12 O -0.557 6.557 13 C 0.090 3.910 14 H 0.117 0.883 15 N -0.816 5.816 16 C -0.083 4.083 17 C 0.039 3.961 18 C -0.543 4.543 19 H 0.053 0.947 20 C 0.002 3.998 21 N -0.928 5.928 22 Si 0.959 3.041 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.277 1.277 26 C -0.147 4.147 27 C -0.084 4.084 28 H 0.132 0.868 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.425 0.575 36 H 0.346 0.654 37 H 0.348 0.652 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.008 0.992 41 H -0.003 1.003 42 H 0.262 0.738 43 H 0.151 0.849 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 -30.392 -9.155 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.304 3.696 4 O -0.427 6.427 5 C -0.100 4.100 6 C -0.104 4.104 7 C -0.111 4.111 8 C -0.166 4.166 9 C 0.040 3.960 10 N -0.308 5.308 11 C 0.276 3.724 12 O -0.435 6.435 13 C -0.026 4.026 14 H 0.135 0.865 15 N -0.345 5.345 16 C -0.122 4.122 17 C 0.002 3.998 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.784 3.216 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.202 1.202 26 C -0.167 4.167 27 C -0.102 4.102 28 H 0.150 0.850 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.127 0.873 35 H 0.264 0.736 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.015 0.985 42 H 0.071 0.929 43 H 0.169 0.831 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.022 -29.607 -8.690 31.117 hybrid contribution -0.948 0.423 0.450 1.132 sum -4.970 -29.184 -8.240 30.729 Atomic orbital electron populations 1.23498 0.75186 1.05575 1.02229 1.86495 1.24628 1.32902 1.83891 1.24259 0.92900 0.81010 0.71420 1.90722 1.68110 1.37613 1.46294 1.20385 0.85951 0.94218 1.09421 1.19481 1.02023 0.95608 0.93276 1.21052 0.97752 0.93555 0.98758 1.21092 1.02012 0.96220 0.97313 1.18104 0.98460 0.84703 0.94782 1.43691 1.48306 1.09352 1.29489 1.22699 0.76889 0.92858 0.79920 1.90656 1.52870 1.59432 1.40521 1.21650 0.92920 0.87254 1.00760 0.86526 1.58968 1.03941 1.65092 1.06546 1.21409 0.95019 0.96659 0.99065 1.18832 0.95675 0.89843 0.95439 1.21746 1.05873 0.92283 1.38226 0.92857 1.25887 0.98589 0.98890 0.96265 1.70098 1.31799 1.07596 1.47316 0.85495 0.79355 0.78509 0.78242 1.19057 1.20581 1.20239 1.21163 1.03547 0.95381 0.96569 1.21154 0.96942 0.93646 0.98461 0.84994 0.92567 0.92163 0.83409 0.84442 0.84761 0.87308 0.73598 0.84007 0.83802 0.91617 0.93880 0.97333 0.98470 0.92898 0.83124 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.14 10.56 -51.40 -0.54 -5.68 16 3 C 0.46 7.80 7.95 71.24 0.57 8.36 16 4 O -0.54 -13.68 15.78 21.96 0.35 -13.33 16 5 C -0.06 -0.68 5.94 29.10 0.17 -0.51 16 6 C -0.10 -1.85 4.38 -19.84 -0.09 -1.94 16 7 C -0.09 -2.10 9.69 22.25 0.22 -1.89 16 8 C -0.15 -4.15 8.66 22.39 0.19 -3.95 16 9 C 0.13 3.46 6.28 38.15 0.24 3.70 16 10 N -0.66 -16.80 5.34 -303.50 -1.62 -18.42 16 11 C 0.49 15.00 6.81 87.65 0.60 15.59 16 12 O -0.56 -19.92 13.94 -3.08 -0.04 -19.96 16 13 C 0.09 2.91 3.15 44.17 0.14 3.05 16 14 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 15 N -0.82 -26.91 8.44 -171.81 -1.45 -28.36 16 16 C -0.08 -3.34 4.78 30.60 0.15 -3.19 16 17 C 0.04 2.03 4.86 29.85 0.15 2.18 16 18 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 19 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 20 C 0.00 0.09 5.46 84.66 0.46 0.55 16 21 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 22 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 C -0.15 -2.89 9.96 22.39 0.22 -2.67 16 27 C -0.08 -1.42 9.69 22.25 0.22 -1.20 16 28 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.15 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.14 0.89 8.09 -2.38 -0.02 0.88 16 33 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.11 3.61 6.42 -2.91 -0.02 3.59 16 35 H 0.43 8.44 8.82 -92.71 -0.82 7.63 16 36 H 0.35 11.71 8.58 -89.69 -0.77 10.94 16 37 H 0.35 9.75 9.06 -89.69 -0.81 8.94 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.01 0.47 7.75 -2.39 -0.02 0.45 16 41 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 44 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -78.15 379.48 2.31 -75.85 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -1.35 Total: 30.45 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 4.66 Total: -11.19 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -2.79 Total: -103.03 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.24 Total: -38.97 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -78.15 2.31 -75.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.149 kcal (2) G-P(sol) polarization free energy of solvation -78.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds