Wall clock time and date at job start Tue Mar 31 2020 12:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99643 * 2 1 4 4 O 1.20822 * 120.00154 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99641 * 180.27713 * 3 2 1 6 6 C 1.50699 * 109.47093 * 179.72186 * 5 3 2 7 7 C 1.38304 * 119.96831 * 269.72654 * 6 5 3 8 8 C 1.38256 * 120.13960 * 179.76385 * 7 6 5 9 9 C 1.38129 * 120.07371 * 0.51074 * 8 7 6 10 10 C 1.38858 * 119.92768 * 359.74371 * 9 8 7 11 11 N 1.39925 * 120.06917 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00078 * 324.93159 * 11 10 9 13 13 O 1.21286 * 119.99868 * 4.63086 * 12 11 10 14 14 C 1.50702 * 119.99769 * 184.62338 * 12 11 10 15 15 H 1.08993 * 109.47171 * 320.00169 * 14 12 11 16 16 N 1.46901 * 109.46927 * 200.00392 * 14 12 11 17 17 C 1.52996 * 109.46968 * 80.00588 * 14 12 11 18 18 C 1.52998 * 109.47135 * 184.99881 * 17 14 12 19 19 C 1.50696 * 109.47633 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99815 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00493 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00157 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46817 * 60.00287 * 23 21 19 25 25 H 1.48506 * 109.47159 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47159 * 299.99835 * 23 21 19 27 27 C 1.38097 * 119.96113 * 90.00173 * 6 5 3 28 28 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47068 * 299.99598 * 1 2 3 30 30 H 1.08998 * 109.47694 * 59.99918 * 1 2 3 31 31 H 1.08993 * 109.47089 * 299.72490 * 5 3 2 32 32 H 1.09007 * 109.46771 * 59.72557 * 5 3 2 33 33 H 1.07996 * 119.92480 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.96099 * 180.23039 * 8 7 6 35 35 H 1.08003 * 120.04085 * 179.72046 * 9 8 7 36 36 H 0.96999 * 120.00200 * 144.93590 * 11 10 9 37 37 H 1.00899 * 111.00010 * 299.99935 * 16 14 12 38 38 H 1.00901 * 111.00490 * 63.95043 * 16 14 12 39 39 H 1.09001 * 109.46726 * 304.99556 * 17 14 12 40 40 H 1.08995 * 109.47520 * 64.99639 * 17 14 12 41 41 H 1.09005 * 109.46927 * 300.00236 * 18 17 14 42 42 H 1.09009 * 109.47161 * 59.99628 * 18 17 14 43 43 H 0.97001 * 120.00482 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.03455 * 359.95332 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0063 6 6 3.9935 2.7201 -0.0119 7 6 4.1900 3.3778 -1.2125 8 6 4.5773 4.7050 -1.2218 9 6 4.7794 5.3754 -0.0311 10 6 4.5880 4.7164 1.1761 11 7 4.7925 5.3925 2.3839 12 6 5.7668 6.3186 2.4813 13 8 6.4109 6.6266 1.5009 14 6 6.0558 6.9715 3.8085 15 1 5.1179 7.1762 4.3246 16 7 6.7780 8.2315 3.5873 17 6 6.9136 6.0349 4.6615 18 6 7.1029 6.6425 6.0529 19 6 7.9473 5.7197 6.8934 20 1 8.3121 4.7923 6.4770 21 6 8.2541 6.0592 8.1940 22 7 7.8095 7.1882 8.7013 23 14 9.3002 4.9150 9.2361 24 1 10.6252 4.7310 8.5912 25 1 9.4840 5.5048 10.5865 26 1 8.6225 3.5994 9.3592 27 6 4.1939 3.3846 1.1820 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.9596 0.7832 0.8833 32 1 3.9523 0.7785 -0.8967 33 1 4.0365 2.8547 -2.1448 34 1 4.7263 5.2168 -2.1611 35 1 5.0863 6.4109 -0.0390 36 1 4.2330 5.1946 3.1512 37 1 7.6518 8.0684 3.1099 38 1 6.2071 8.8915 3.0809 39 1 6.4171 5.0687 4.7515 40 1 7.8862 5.9010 4.1882 41 1 7.5993 7.6087 5.9629 42 1 6.1301 6.7764 6.5263 43 1 8.0257 7.4273 9.6162 44 1 4.0439 2.8694 2.1192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424147598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:07 Heat of formation + Delta-G solvation = -105.904517 kcal Electronic energy + Delta-G solvation = -25826.279037 eV Core-core repulsion = 21936.196468 eV Total energy + Delta-G solvation = -3890.082569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97792 -40.50072 -38.84165 -36.81422 -35.44064 -34.93013 -32.99396 -32.80166 -30.24985 -30.02355 -28.98869 -27.15960 -26.44862 -24.11191 -22.82364 -22.26243 -21.27312 -20.31897 -19.79277 -17.98621 -17.80885 -17.17582 -16.87672 -16.59760 -16.42708 -16.11903 -15.56572 -15.36114 -14.84778 -14.38895 -14.33943 -13.98196 -13.86045 -13.72480 -13.56956 -13.36185 -12.73475 -12.44375 -12.39523 -12.34087 -12.11324 -11.87525 -11.60815 -11.43165 -11.17004 -10.89731 -10.84736 -10.71006 -10.61936 -10.39769 -10.09108 -9.83390 -9.41713 -9.04598 -8.96964 -8.43694 -8.26531 -8.19821 -5.95763 -3.98263 1.10535 1.19429 1.87690 2.39887 2.63714 3.07031 3.34818 3.39517 3.41796 3.68615 4.23284 4.48069 4.56728 4.60131 4.70868 4.72992 4.80513 4.86109 4.97484 5.01574 5.09191 5.15112 5.23177 5.39416 5.40717 5.43946 5.54303 5.73613 5.77814 6.01893 6.18570 6.21615 6.35947 6.38134 6.42163 6.59229 6.91869 7.03086 7.25524 7.40823 7.44893 7.71340 7.73538 7.92593 8.09649 8.12253 8.45486 9.09323 9.65025 11.15048 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.002511 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.498713 B =11149.217586 C =12634.316821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.495 6.495 5 C -0.070 4.070 6 C -0.066 4.066 7 C -0.122 4.122 8 C -0.102 4.102 9 C -0.116 4.116 10 C 0.152 3.848 11 N -0.674 5.674 12 C 0.484 3.516 13 O -0.534 6.534 14 C 0.081 3.919 15 H 0.101 0.899 16 N -0.805 5.805 17 C -0.096 4.096 18 C 0.032 3.968 19 C -0.524 4.524 20 H 0.051 0.949 21 C 0.058 3.942 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.129 4.129 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.414 0.586 37 H 0.349 0.651 38 H 0.335 0.665 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.013 0.987 43 H 0.260 0.740 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 -11.830 -20.524 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.381 6.381 5 C -0.108 4.108 6 C -0.066 4.066 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.136 4.136 10 C 0.058 3.942 11 N -0.319 5.319 12 C 0.271 3.729 13 O -0.409 6.409 14 C -0.035 4.035 15 H 0.119 0.881 16 N -0.333 5.333 17 C -0.134 4.134 18 C -0.005 4.005 19 C -0.562 4.562 20 H 0.070 0.930 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.204 1.204 27 C -0.150 4.150 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.156 0.844 36 H 0.250 0.750 37 H 0.163 0.837 38 H 0.147 0.853 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.145 -11.071 -20.177 26.504 hybrid contribution -0.086 -0.976 -0.005 0.980 sum -13.230 -12.047 -20.183 26.973 Atomic orbital electron populations 1.23271 0.76193 1.03705 1.02656 1.86503 1.23564 1.33524 1.84334 1.23729 0.91960 0.81398 0.72749 1.90714 1.67012 1.36240 1.44169 1.20290 0.87810 0.95729 1.06934 1.18920 1.00735 0.93660 0.93315 1.20899 1.01111 0.95076 0.96956 1.20991 0.98855 0.94330 0.97855 1.21330 1.00198 1.01258 0.90844 1.17779 0.99125 0.90984 0.86351 1.43825 1.35438 1.40052 1.12610 1.23090 0.77794 0.78502 0.93496 1.90641 1.49190 1.61930 1.39186 1.21886 1.00252 0.91396 0.89989 0.88080 1.58989 1.08311 1.09309 1.56697 1.21683 0.97343 0.95932 0.98457 1.19014 0.97006 0.96908 0.87606 1.21226 1.32282 1.05544 0.97170 0.93030 1.24990 0.96142 0.95210 0.97966 1.69961 1.45545 1.22444 1.15199 0.86703 0.81005 0.81013 0.79510 1.20300 1.21321 1.20360 1.20749 1.03504 0.92574 0.98128 0.88057 0.91798 0.91901 0.86504 0.86547 0.86175 0.85662 0.84363 0.74990 0.83673 0.85307 0.92734 0.92700 0.94605 0.96834 0.93007 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.02 10.57 -39.26 -0.41 -3.44 16 3 C 0.46 4.38 7.95 36.01 0.29 4.67 16 4 O -0.50 -6.36 15.78 -18.75 -0.30 -6.66 16 5 C -0.07 -0.52 5.94 -29.03 -0.17 -0.69 16 6 C -0.07 -0.67 4.37 -104.65 -0.46 -1.13 16 7 C -0.12 -1.24 9.70 -39.55 -0.38 -1.62 16 8 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 9 C -0.12 -1.56 8.70 -39.39 -0.34 -1.91 16 10 C 0.15 2.02 6.30 -83.69 -0.53 1.50 16 11 N -0.67 -8.77 5.34 -9.86 -0.05 -8.82 16 12 C 0.48 7.39 6.91 -10.98 -0.08 7.32 16 13 O -0.53 -9.31 13.69 5.55 0.08 -9.23 16 14 C 0.08 1.30 3.15 -68.87 -0.22 1.08 16 15 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 16 N -0.81 -13.05 8.44 -5.66 -0.05 -13.10 16 17 C -0.10 -1.88 4.78 -26.73 -0.13 -2.01 16 18 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 19 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 20 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 23 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 C -0.13 -1.49 9.62 -39.39 -0.38 -1.87 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.41 8.13 -51.92 -0.42 -0.02 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.12 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.12 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.14 2.02 6.22 -52.48 -0.33 1.69 16 36 H 0.41 4.43 8.82 -40.82 -0.36 4.07 16 37 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 38 H 0.34 4.66 9.06 -39.29 -0.36 4.31 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 42 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -34.93 379.21 -7.97 -42.90 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.39 Total: 9.70 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.27 Total: -7.66 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.64 Total: -47.91 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.63 Total: -19.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.93 -7.97 -42.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424147598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.005 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds