Wall clock time and date at job start Tue Mar 31 2020 12:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99643 * 2 1 4 4 O 1.20822 * 120.00154 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99641 * 180.27713 * 3 2 1 6 6 C 1.50699 * 109.47093 * 179.72186 * 5 3 2 7 7 C 1.38304 * 119.96831 * 269.72654 * 6 5 3 8 8 C 1.38256 * 120.13960 * 179.76385 * 7 6 5 9 9 C 1.38129 * 120.07371 * 0.51074 * 8 7 6 10 10 C 1.38858 * 119.92768 * 359.74371 * 9 8 7 11 11 N 1.39925 * 120.06917 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00078 * 324.93159 * 11 10 9 13 13 O 1.21286 * 119.99868 * 4.63086 * 12 11 10 14 14 C 1.50702 * 119.99769 * 184.62338 * 12 11 10 15 15 H 1.08993 * 109.47171 * 320.00169 * 14 12 11 16 16 N 1.46901 * 109.46927 * 200.00392 * 14 12 11 17 17 C 1.52996 * 109.46968 * 80.00588 * 14 12 11 18 18 C 1.52998 * 109.47135 * 184.99881 * 17 14 12 19 19 C 1.50696 * 109.47633 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99815 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00493 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00157 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46817 * 60.00287 * 23 21 19 25 25 H 1.48506 * 109.47159 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47159 * 299.99835 * 23 21 19 27 27 C 1.38097 * 119.96113 * 90.00173 * 6 5 3 28 28 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47068 * 299.99598 * 1 2 3 30 30 H 1.08998 * 109.47694 * 59.99918 * 1 2 3 31 31 H 1.08993 * 109.47089 * 299.72490 * 5 3 2 32 32 H 1.09007 * 109.46771 * 59.72557 * 5 3 2 33 33 H 1.07996 * 119.92480 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.96099 * 180.23039 * 8 7 6 35 35 H 1.08003 * 120.04085 * 179.72046 * 9 8 7 36 36 H 0.96999 * 120.00200 * 144.93590 * 11 10 9 37 37 H 1.00899 * 111.00010 * 299.99935 * 16 14 12 38 38 H 1.00901 * 111.00490 * 63.95043 * 16 14 12 39 39 H 1.09001 * 109.46726 * 304.99556 * 17 14 12 40 40 H 1.08995 * 109.47520 * 64.99639 * 17 14 12 41 41 H 1.09005 * 109.46927 * 300.00236 * 18 17 14 42 42 H 1.09009 * 109.47161 * 59.99628 * 18 17 14 43 43 H 0.97001 * 120.00482 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.03455 * 359.95332 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0063 6 6 3.9935 2.7201 -0.0119 7 6 4.1900 3.3778 -1.2125 8 6 4.5773 4.7050 -1.2218 9 6 4.7794 5.3754 -0.0311 10 6 4.5880 4.7164 1.1761 11 7 4.7925 5.3925 2.3839 12 6 5.7668 6.3186 2.4813 13 8 6.4109 6.6266 1.5009 14 6 6.0558 6.9715 3.8085 15 1 5.1179 7.1762 4.3246 16 7 6.7780 8.2315 3.5873 17 6 6.9136 6.0349 4.6615 18 6 7.1029 6.6425 6.0529 19 6 7.9473 5.7197 6.8934 20 1 8.3121 4.7923 6.4770 21 6 8.2541 6.0592 8.1940 22 7 7.8095 7.1882 8.7013 23 14 9.3002 4.9150 9.2361 24 1 10.6252 4.7310 8.5912 25 1 9.4840 5.5048 10.5865 26 1 8.6225 3.5994 9.3592 27 6 4.1939 3.3846 1.1820 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.9596 0.7832 0.8833 32 1 3.9523 0.7785 -0.8967 33 1 4.0365 2.8547 -2.1448 34 1 4.7263 5.2168 -2.1611 35 1 5.0863 6.4109 -0.0390 36 1 4.2330 5.1946 3.1512 37 1 7.6518 8.0684 3.1099 38 1 6.2071 8.8915 3.0809 39 1 6.4171 5.0687 4.7515 40 1 7.8862 5.9010 4.1882 41 1 7.5993 7.6087 5.9629 42 1 6.1301 6.7764 6.5263 43 1 8.0257 7.4273 9.6162 44 1 4.0439 2.8694 2.1192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424147598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:07 Heat of formation + Delta-G solvation = -129.728087 kcal Electronic energy + Delta-G solvation = -25827.312104 eV Core-core repulsion = 21936.196468 eV Total energy + Delta-G solvation = -3891.115636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86466 -41.43092 -39.79676 -37.54943 -36.89554 -36.03927 -34.83710 -33.73494 -31.95435 -31.04918 -29.69510 -28.13889 -27.71428 -25.74202 -23.67727 -23.40913 -22.39559 -21.66487 -20.92356 -18.96958 -18.66377 -18.34016 -18.09663 -17.57603 -17.35650 -17.18516 -16.94780 -16.50294 -16.30273 -15.91883 -15.35173 -15.12445 -14.78302 -14.59374 -14.40902 -14.29335 -14.17552 -13.89629 -13.57246 -13.42978 -13.05081 -12.95391 -12.78030 -12.77260 -12.49355 -12.30591 -12.23862 -11.79179 -11.77454 -11.63947 -11.58416 -11.34616 -11.21370 -10.99473 -10.48356 -9.84345 -9.68749 -9.16561 -8.13473 -6.23782 0.22113 0.31735 1.18961 1.39373 1.42993 1.44995 1.52756 1.84473 1.99756 2.44972 2.82543 3.19605 3.48079 3.53855 3.71704 3.89682 3.99271 4.06234 4.14046 4.26502 4.29717 4.31838 4.34380 4.35599 4.50659 4.60952 4.69196 4.72739 4.75976 4.90409 4.97718 5.23192 5.29734 5.31258 5.40382 5.50091 5.53477 5.57178 5.84024 5.98500 6.00431 6.06333 6.30235 6.32285 6.49128 6.73707 6.94695 6.98072 7.44331 8.97476 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.002511 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.498713 B =11149.217586 C =12634.316821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.536 6.536 5 C -0.067 4.067 6 C -0.067 4.067 7 C -0.121 4.121 8 C -0.108 4.108 9 C -0.139 4.139 10 C 0.127 3.873 11 N -0.663 5.663 12 C 0.490 3.510 13 O -0.557 6.557 14 C 0.089 3.911 15 H 0.114 0.886 16 N -0.817 5.817 17 C -0.082 4.082 18 C 0.039 3.961 19 C -0.544 4.544 20 H 0.056 0.944 21 C 0.001 3.999 22 N -0.930 5.930 23 Si 0.959 3.041 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.265 1.265 27 C -0.136 4.136 28 H 0.131 0.869 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.424 0.576 37 H 0.347 0.653 38 H 0.348 0.652 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.006 0.994 42 H -0.005 1.005 43 H 0.262 0.738 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 -14.625 -21.446 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.425 6.425 5 C -0.104 4.104 6 C -0.068 4.068 7 C -0.139 4.139 8 C -0.126 4.126 9 C -0.160 4.160 10 C 0.033 3.967 11 N -0.308 5.308 12 C 0.277 3.723 13 O -0.435 6.435 14 C -0.026 4.026 15 H 0.132 0.868 16 N -0.346 5.346 17 C -0.120 4.120 18 C 0.002 3.998 19 C -0.582 4.582 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.784 3.216 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.156 4.156 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.137 0.863 36 H 0.262 0.738 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.013 0.987 43 H 0.071 0.929 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.490 -13.907 -21.111 28.654 hybrid contribution -0.070 -0.151 0.212 0.270 sum -13.561 -14.058 -20.899 28.605 Atomic orbital electron populations 1.23508 0.75077 1.05574 1.02309 1.86501 1.24719 1.32846 1.83853 1.24109 0.92679 0.81071 0.71464 1.90707 1.68026 1.37502 1.46284 1.20412 0.86351 0.94084 1.09517 1.19289 0.99488 0.95183 0.92820 1.21294 0.99648 0.94659 0.98292 1.21262 0.98451 0.95085 0.97835 1.21333 1.01737 1.00817 0.92074 1.17985 1.00719 0.91945 0.86047 1.43643 1.34757 1.39170 1.13240 1.22686 0.78160 0.78816 0.92598 1.90636 1.50316 1.62806 1.39710 1.21657 0.99971 0.90776 0.90241 0.86777 1.58973 1.08644 1.09789 1.57168 1.21402 0.97800 0.96982 0.95848 1.18825 0.95140 0.95499 0.90311 1.21697 1.32532 1.06091 0.97897 0.92579 1.25902 0.97470 0.96802 0.99475 1.70096 1.46950 1.24309 1.15636 0.85596 0.79295 0.79163 0.77544 1.19606 1.21016 1.19031 1.20998 1.03105 0.91959 0.99512 0.85116 0.92419 0.92057 0.84373 0.83431 0.83305 0.83872 0.86289 0.73790 0.83939 0.83865 0.91318 0.93762 0.97507 0.98673 0.92935 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.19 10.57 -51.44 -0.54 -5.73 16 3 C 0.46 7.79 7.95 71.24 0.57 8.35 16 4 O -0.54 -13.12 15.78 21.98 0.35 -12.78 16 5 C -0.07 -0.76 5.94 29.10 0.17 -0.59 16 6 C -0.07 -1.22 4.37 -19.88 -0.09 -1.31 16 7 C -0.12 -2.17 9.70 22.29 0.22 -1.96 16 8 C -0.11 -2.31 10.04 22.25 0.22 -2.09 16 9 C -0.14 -3.77 8.70 22.39 0.19 -3.57 16 10 C 0.13 3.32 6.30 38.15 0.24 3.56 16 11 N -0.66 -17.00 5.34 -303.50 -1.62 -18.62 16 12 C 0.49 15.00 6.91 87.66 0.61 15.60 16 13 O -0.56 -19.72 13.69 -3.05 -0.04 -19.76 16 14 C 0.09 2.89 3.15 44.17 0.14 3.03 16 15 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 16 N -0.82 -26.95 8.44 -171.81 -1.45 -28.40 16 17 C -0.08 -3.23 4.78 30.59 0.15 -3.09 16 18 C 0.04 2.02 4.86 29.85 0.15 2.17 16 19 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 20 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 21 C 0.00 0.08 5.46 84.65 0.46 0.54 16 22 N -0.93 -56.50 13.29 21.44 0.28 -56.21 16 23 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C -0.14 -2.93 9.62 22.39 0.22 -2.72 16 28 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.67 8.13 -2.38 -0.02 0.65 16 30 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.14 1.03 8.08 -2.39 -0.02 1.02 16 32 H 0.15 0.79 8.08 -2.38 -0.02 0.77 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.12 3.62 6.22 -2.91 -0.02 3.60 16 36 H 0.42 8.76 8.82 -92.71 -0.82 7.94 16 37 H 0.35 11.68 8.58 -89.69 -0.77 10.91 16 38 H 0.35 9.79 9.06 -89.69 -0.81 8.98 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.01 0.37 7.75 -2.38 -0.02 0.35 16 42 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -76.47 379.21 2.32 -74.15 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -1.35 Total: 32.12 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 4.67 Total: -10.96 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -2.78 Total: -103.22 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.24 Total: -38.27 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -76.47 2.32 -74.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424147598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.576 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds