Wall clock time and date at job start Tue Mar 31 2020 12:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34641 * 116.99806 * 2 1 4 4 O 1.21509 * 120.00133 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00051 * 179.97438 * 3 2 1 6 6 C 1.47077 * 120.88364 * 179.97438 * 5 3 2 7 7 C 1.53236 * 108.52406 * 231.16566 * 6 5 3 8 8 N 1.46896 * 109.33854 * 306.17201 * 7 6 5 9 9 C 1.46902 * 111.00365 * 187.25372 * 8 7 6 10 10 C 1.50696 * 109.47653 * 169.99656 * 9 8 7 11 11 C 1.38300 * 119.92953 * 269.72940 * 10 9 8 12 12 C 1.38100 * 120.06481 * 179.72311 * 11 10 9 13 13 C 1.38879 * 119.93523 * 0.54683 * 12 11 10 14 14 O 1.35750 * 120.07634 * 179.74671 * 13 12 11 15 15 C 1.34827 * 117.00361 * 174.44218 * 14 13 12 16 16 H 1.08002 * 119.99776 * 5.05667 * 15 14 13 17 17 C 1.38644 * 119.99995 * 185.05608 * 15 14 13 18 18 N 1.31558 * 120.00307 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47108 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46818 * 120.00311 * 19 17 15 22 22 H 1.48498 * 109.46956 * 239.99845 * 19 17 15 23 23 C 1.38885 * 119.85554 * 359.72716 * 13 12 11 24 24 C 1.38100 * 119.93438 * 359.97438 * 23 13 12 25 25 C 1.46899 * 111.27364 * 63.10475 * 8 7 6 26 26 C 1.47079 * 120.87547 * 359.97438 * 5 3 2 27 27 H 1.09003 * 109.47347 * 59.99816 * 1 2 3 28 28 H 1.09002 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47337 * 299.99923 * 1 2 3 30 30 H 1.08997 * 109.62468 * 111.45268 * 6 5 3 31 31 H 1.09009 * 109.78645 * 350.96990 * 6 5 3 32 32 H 1.08993 * 109.49631 * 186.21037 * 7 6 5 33 33 H 1.09004 * 109.49241 * 66.12599 * 7 6 5 34 34 H 1.09004 * 109.47197 * 290.00337 * 9 8 7 35 35 H 1.09006 * 109.46647 * 49.99496 * 9 8 7 36 36 H 1.07999 * 119.96721 * 359.97438 * 11 10 9 37 37 H 1.08003 * 120.03649 * 180.27282 * 12 11 10 38 38 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.02888 * 179.97438 * 23 13 12 40 40 H 1.07999 * 119.96459 * 180.02562 * 24 23 13 41 41 H 1.08995 * 109.49206 * 56.85247 * 25 8 7 42 42 H 1.08996 * 109.49797 * 176.93965 * 25 8 7 43 43 H 1.09006 * 109.62269 * 248.53942 * 26 5 3 44 44 H 1.08996 * 109.63692 * 9.12483 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0969 2.5703 0.0000 7 6 5.1304 2.5738 -1.1314 8 7 6.0100 1.4058 -0.9904 9 6 7.1195 1.4631 -1.9515 10 6 8.1272 0.3928 -1.6200 11 6 9.1717 0.6718 -0.7575 12 6 10.0935 -0.3086 -0.4472 13 6 9.9774 -1.5724 -1.0112 14 8 10.8849 -2.5367 -0.7123 15 6 10.6500 -3.7710 -1.2012 16 1 9.8167 -3.9383 -1.8676 17 6 11.4783 -4.8255 -0.8486 18 7 12.4930 -4.6219 -0.0365 19 14 11.1524 -6.5359 -1.5255 20 1 9.9598 -6.4994 -2.4094 21 1 12.3314 -6.9928 -2.3043 22 1 10.9076 -7.4747 -0.4014 23 6 8.9306 -1.8477 -1.8814 24 6 8.0085 -0.8648 -2.1829 25 6 5.2574 0.1520 -1.1294 26 6 4.2290 0.0492 0.0017 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 4.5996 2.7189 0.9556 31 1 3.3741 3.3701 -0.1618 32 1 5.7252 3.4856 -1.0779 33 1 4.6179 2.5292 -2.0924 34 1 6.7361 1.3017 -2.9591 35 1 7.5972 2.4414 -1.8970 36 1 9.2642 1.6562 -0.3229 37 1 10.9065 -0.0915 0.2298 38 1 13.0723 -5.3597 0.2105 39 1 8.8379 -2.8294 -2.3220 40 1 7.1940 -1.0785 -2.8592 41 1 4.7431 0.1411 -2.0904 42 1 5.9442 -0.6926 -1.0744 43 1 4.7445 -0.0447 0.9575 44 1 3.5917 -0.8200 -0.1608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491488962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:24 Heat of formation + Delta-G solvation = -62.464823 kcal Electronic energy + Delta-G solvation = -26535.784445 eV Core-core repulsion = 22647.585563 eV Total energy + Delta-G solvation = -3888.198882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83402 -39.37772 -38.58868 -36.91850 -36.32196 -34.70723 -32.34507 -31.46070 -30.32354 -30.17986 -28.28060 -26.93504 -25.47445 -24.12441 -23.81117 -22.07773 -21.79314 -20.39534 -20.01769 -18.29228 -17.99499 -17.30790 -16.96616 -16.74338 -15.45281 -15.34772 -15.19096 -14.94897 -14.70590 -14.53104 -14.25491 -14.11952 -13.94117 -13.58063 -13.44335 -13.00788 -12.81860 -12.71969 -12.36127 -12.23989 -11.90489 -11.68688 -11.59391 -11.51223 -11.34298 -11.21461 -11.02234 -10.77867 -10.66941 -10.62677 -10.57715 -10.43623 -9.35424 -9.08421 -8.86281 -8.34856 -8.18064 -7.20324 -6.47422 -4.06298 1.91533 2.19008 2.24767 2.58688 3.10123 3.11908 3.17398 3.65044 3.86709 3.94623 4.57607 4.71867 4.77648 4.85847 4.92186 4.94415 5.04117 5.07776 5.12914 5.19568 5.26981 5.32986 5.35697 5.42729 5.50162 5.63837 5.68981 5.72750 5.79956 5.86022 5.88417 6.01996 6.16756 6.19454 6.39915 6.68038 6.85604 6.92279 6.95004 7.08460 7.13569 7.24582 7.36479 7.42300 7.80384 7.97599 8.03257 8.98382 9.68573 10.70632 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017004 B = 0.002645 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.283135 B =10585.277992 C =11775.757981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.649 3.351 4 O -0.579 6.579 5 N -0.594 5.594 6 C 0.133 3.867 7 C 0.040 3.960 8 N -0.532 5.532 9 C 0.115 3.885 10 C -0.181 4.181 11 C -0.051 4.051 12 C -0.194 4.194 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.234 4.234 24 C -0.067 4.067 25 C 0.038 3.962 26 C 0.116 3.884 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 10.195 -1.822 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.469 6.469 5 N -0.334 5.334 6 C 0.012 3.988 7 C -0.089 4.089 8 N -0.257 5.257 9 C -0.012 4.012 10 C -0.182 4.182 11 C -0.070 4.070 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.253 4.253 24 C -0.086 4.086 25 C -0.091 4.091 26 C -0.006 4.006 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.052 0.948 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.898 10.343 -1.121 20.702 hybrid contribution -0.617 -0.965 -1.186 1.649 sum -18.515 9.378 -2.306 20.882 Atomic orbital electron populations 1.23184 0.74534 1.03462 1.02605 1.86250 1.24051 1.31027 1.87040 1.18042 0.83168 0.82112 0.76312 1.90972 1.64288 1.34969 1.56649 1.47023 1.01750 1.09139 1.75522 1.21768 0.93933 0.83480 0.99661 1.22508 0.94379 0.95001 0.97015 1.62014 1.09987 1.01325 1.52352 1.20795 0.89991 0.98191 0.92188 1.19031 0.99000 0.94980 1.05226 1.20443 0.93243 0.97598 0.95710 1.20225 1.02980 0.92146 1.05971 1.19406 0.88463 0.89829 0.92083 1.83981 1.41000 1.17361 1.65761 1.21362 1.14925 0.82116 1.28342 0.89034 1.25288 0.95374 0.99438 0.96427 1.70046 1.15027 1.32615 1.32002 0.85654 0.78638 0.80530 0.78647 1.19109 1.20163 1.20117 1.21118 0.98542 1.00707 1.04965 1.20584 0.97364 0.92570 0.98037 1.22565 0.95633 0.94421 0.96447 1.21915 0.92537 0.85988 1.00191 0.91981 0.87954 0.91902 0.90084 0.88529 0.89103 0.94568 0.94919 0.90579 0.87062 0.86586 0.92049 0.85658 0.87978 0.94762 0.87932 0.90000 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -4.10 9.25 -40.33 -0.37 -4.48 16 3 C 0.65 8.31 8.44 54.06 0.46 8.76 16 4 O -0.58 -8.70 15.59 -19.28 -0.30 -9.01 16 5 N -0.59 -6.82 3.01 -178.26 -0.54 -7.36 16 6 C 0.13 1.34 6.59 -3.61 -0.02 1.31 16 7 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 8 N -0.53 -6.23 4.62 -235.78 -1.09 -7.32 16 9 C 0.11 1.42 5.12 -4.98 -0.03 1.40 16 10 C -0.18 -2.85 4.89 -104.58 -0.51 -3.37 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 12 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 13 C 0.16 3.66 6.65 -39.10 -0.26 3.40 16 14 O -0.18 -4.98 9.76 0.06 0.00 -4.98 16 15 C -0.39 -10.72 9.49 30.88 0.29 -10.43 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -24.99 13.67 55.48 0.76 -24.23 16 19 Si 0.94 20.19 29.55 -169.99 -5.02 15.16 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.23 -4.85 9.17 -39.39 -0.36 -5.21 16 24 C -0.07 -1.14 7.85 -39.61 -0.31 -1.45 16 25 C 0.04 0.44 5.33 -3.71 -0.02 0.42 16 26 C 0.12 1.25 6.61 -3.61 -0.02 1.23 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.98 7.07 -51.92 -0.37 0.61 16 32 H 0.09 0.73 7.99 -51.93 -0.41 0.32 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.03 0.39 8.07 -51.93 -0.42 -0.02 16 35 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.13 2.63 5.64 -52.48 -0.30 2.33 16 40 H 0.10 1.50 7.93 -52.49 -0.42 1.08 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 1.34 5.65 -51.93 -0.29 1.05 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.94 6.98 -51.93 -0.36 0.58 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -32.20 362.12 -7.91 -40.11 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.19 Total: 3.34 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.61 Total: -6.70 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.87 Total: -38.91 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.67 Total: -18.46 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.20 -7.91 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491488962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.351 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds