Wall clock time and date at job start Tue Mar 31 2020 12:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34641 * 116.99806 * 2 1 4 4 O 1.21509 * 120.00133 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00051 * 179.97438 * 3 2 1 6 6 C 1.47077 * 120.88364 * 179.97438 * 5 3 2 7 7 C 1.53236 * 108.52406 * 231.16566 * 6 5 3 8 8 N 1.46896 * 109.33854 * 306.17201 * 7 6 5 9 9 C 1.46902 * 111.00365 * 187.25372 * 8 7 6 10 10 C 1.50696 * 109.47653 * 169.99656 * 9 8 7 11 11 C 1.38300 * 119.92953 * 269.72940 * 10 9 8 12 12 C 1.38100 * 120.06481 * 179.72311 * 11 10 9 13 13 C 1.38879 * 119.93523 * 0.54683 * 12 11 10 14 14 O 1.35750 * 120.07634 * 179.74671 * 13 12 11 15 15 C 1.34827 * 117.00361 * 174.44218 * 14 13 12 16 16 H 1.08002 * 119.99776 * 5.05667 * 15 14 13 17 17 C 1.38644 * 119.99995 * 185.05608 * 15 14 13 18 18 N 1.31558 * 120.00307 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47108 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46818 * 120.00311 * 19 17 15 22 22 H 1.48498 * 109.46956 * 239.99845 * 19 17 15 23 23 C 1.38885 * 119.85554 * 359.72716 * 13 12 11 24 24 C 1.38100 * 119.93438 * 359.97438 * 23 13 12 25 25 C 1.46899 * 111.27364 * 63.10475 * 8 7 6 26 26 C 1.47079 * 120.87547 * 359.97438 * 5 3 2 27 27 H 1.09003 * 109.47347 * 59.99816 * 1 2 3 28 28 H 1.09002 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47337 * 299.99923 * 1 2 3 30 30 H 1.08997 * 109.62468 * 111.45268 * 6 5 3 31 31 H 1.09009 * 109.78645 * 350.96990 * 6 5 3 32 32 H 1.08993 * 109.49631 * 186.21037 * 7 6 5 33 33 H 1.09004 * 109.49241 * 66.12599 * 7 6 5 34 34 H 1.09004 * 109.47197 * 290.00337 * 9 8 7 35 35 H 1.09006 * 109.46647 * 49.99496 * 9 8 7 36 36 H 1.07999 * 119.96721 * 359.97438 * 11 10 9 37 37 H 1.08003 * 120.03649 * 180.27282 * 12 11 10 38 38 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.02888 * 179.97438 * 23 13 12 40 40 H 1.07999 * 119.96459 * 180.02562 * 24 23 13 41 41 H 1.08995 * 109.49206 * 56.85247 * 25 8 7 42 42 H 1.08996 * 109.49797 * 176.93965 * 25 8 7 43 43 H 1.09006 * 109.62269 * 248.53942 * 26 5 3 44 44 H 1.08996 * 109.63692 * 9.12483 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0969 2.5703 0.0000 7 6 5.1304 2.5738 -1.1314 8 7 6.0100 1.4058 -0.9904 9 6 7.1195 1.4631 -1.9515 10 6 8.1272 0.3928 -1.6200 11 6 9.1717 0.6718 -0.7575 12 6 10.0935 -0.3086 -0.4472 13 6 9.9774 -1.5724 -1.0112 14 8 10.8849 -2.5367 -0.7123 15 6 10.6500 -3.7710 -1.2012 16 1 9.8167 -3.9383 -1.8676 17 6 11.4783 -4.8255 -0.8486 18 7 12.4930 -4.6219 -0.0365 19 14 11.1524 -6.5359 -1.5255 20 1 9.9598 -6.4994 -2.4094 21 1 12.3314 -6.9928 -2.3043 22 1 10.9076 -7.4747 -0.4014 23 6 8.9306 -1.8477 -1.8814 24 6 8.0085 -0.8648 -2.1829 25 6 5.2574 0.1520 -1.1294 26 6 4.2290 0.0492 0.0017 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 4.5996 2.7189 0.9556 31 1 3.3741 3.3701 -0.1618 32 1 5.7252 3.4856 -1.0779 33 1 4.6179 2.5292 -2.0924 34 1 6.7361 1.3017 -2.9591 35 1 7.5972 2.4414 -1.8970 36 1 9.2642 1.6562 -0.3229 37 1 10.9065 -0.0915 0.2298 38 1 13.0723 -5.3597 0.2105 39 1 8.8379 -2.8294 -2.3220 40 1 7.1940 -1.0785 -2.8592 41 1 4.7431 0.1411 -2.0904 42 1 5.9442 -0.6926 -1.0744 43 1 4.7445 -0.0447 0.9575 44 1 3.5917 -0.8200 -0.1608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491488962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:23 Heat of formation + Delta-G solvation = -84.158801 kcal Electronic energy + Delta-G solvation = -26536.725167 eV Core-core repulsion = 22647.585563 eV Total energy + Delta-G solvation = -3889.139604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73945 -40.83298 -39.75355 -38.28727 -37.40506 -35.77213 -34.25874 -32.37363 -31.70298 -31.57629 -29.20122 -27.94646 -27.25348 -25.19752 -24.79366 -23.52820 -22.84781 -21.83937 -20.87517 -19.80237 -19.17945 -18.76191 -18.20456 -17.61606 -16.59107 -16.46815 -16.30060 -16.24022 -15.86055 -15.76158 -15.44475 -15.37578 -15.20577 -14.90258 -14.72514 -14.32499 -14.14331 -13.89917 -13.55499 -13.35430 -13.01583 -12.98637 -12.76820 -12.59105 -12.49832 -12.34360 -12.21944 -12.13122 -12.08000 -11.82508 -11.78237 -11.62666 -11.12738 -10.77735 -9.99089 -9.70088 -9.27130 -8.84625 -8.44971 -6.12675 0.65404 0.71895 1.11435 1.36432 1.44430 1.54434 1.63424 2.19128 2.73074 2.86096 3.02798 3.32089 3.57505 3.86184 3.90088 4.01401 4.08296 4.22455 4.24977 4.26101 4.33596 4.35287 4.38087 4.49423 4.54277 4.66395 4.68347 4.74726 4.78635 4.84587 4.86634 4.87831 5.04377 5.13949 5.18731 5.20986 5.31548 5.35735 5.62644 5.76137 5.83320 6.01211 6.06148 6.12153 6.22730 6.29752 7.00331 7.11568 7.82589 8.78654 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017004 B = 0.002645 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.283135 B =10585.277992 C =11775.757981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.376 6.376 3 C 0.645 3.355 4 O -0.607 6.607 5 N -0.594 5.594 6 C 0.131 3.869 7 C 0.047 3.953 8 N -0.540 5.540 9 C 0.117 3.883 10 C -0.152 4.152 11 C -0.044 4.044 12 C -0.206 4.206 13 C 0.114 3.886 14 O -0.235 6.235 15 C -0.409 4.409 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.017 2.983 20 H -0.250 1.250 21 H -0.270 1.270 22 H -0.269 1.269 23 C -0.242 4.242 24 C -0.061 4.061 25 C 0.041 3.959 26 C 0.120 3.880 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.147 0.853 37 H 0.110 0.890 38 H 0.272 0.728 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.039 0.961 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.795 11.547 -3.092 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.289 6.289 3 C 0.400 3.600 4 O -0.499 6.499 5 N -0.334 5.334 6 C 0.010 3.990 7 C -0.081 4.081 8 N -0.265 5.265 9 C -0.009 4.009 10 C -0.153 4.153 11 C -0.062 4.062 12 C -0.225 4.225 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.486 4.486 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.261 4.261 24 C -0.079 4.079 25 C -0.088 4.088 26 C -0.002 4.002 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.165 0.835 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.057 0.943 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.520 11.739 -2.407 23.763 hybrid contribution -0.072 -1.056 -0.809 1.332 sum -20.593 10.683 -3.216 23.421 Atomic orbital electron populations 1.23482 0.72828 1.05538 1.02542 1.86255 1.25773 1.30157 1.86711 1.18230 0.83505 0.82213 0.76062 1.90948 1.64947 1.35951 1.58052 1.47159 1.01502 1.09819 1.74904 1.21869 0.93944 0.82912 1.00284 1.22526 0.94085 0.94867 0.96654 1.61940 1.10403 1.02009 1.52144 1.20818 0.89438 0.97720 0.92936 1.19532 0.98450 0.95215 1.02087 1.20835 0.92121 0.98103 0.95187 1.20473 1.03927 0.92068 1.06081 1.19958 0.89486 0.90214 0.93996 1.83943 1.43652 1.18278 1.68275 1.21835 1.15406 0.82698 1.28631 0.88098 1.26565 0.94953 1.03897 0.96729 1.70191 1.16949 1.34112 1.34825 0.84544 0.79092 0.74471 0.78203 1.17374 1.19497 1.19430 1.21196 0.98797 1.01419 1.04688 1.20899 0.96912 0.92139 0.97986 1.22499 0.95411 0.93964 0.96899 1.21882 0.92384 0.86112 0.99830 0.92049 0.84841 0.92010 0.89465 0.88660 0.86758 0.94564 0.93591 0.88199 0.83531 0.87232 0.91928 0.86663 0.84864 0.94307 0.89412 0.90252 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.56 113.37 1.20 1.87 16 2 O -0.38 -7.66 9.25 -55.51 -0.51 -8.18 16 3 C 0.64 15.44 8.44 129.79 1.10 16.54 16 4 O -0.61 -17.51 15.59 19.81 0.31 -17.20 16 5 N -0.59 -12.27 3.01 -948.30 -2.85 -15.13 16 6 C 0.13 2.26 6.59 86.35 0.57 2.83 16 7 C 0.05 0.71 5.62 86.38 0.49 1.20 16 8 N -0.54 -10.36 4.62 -899.88 -4.16 -14.52 16 9 C 0.12 2.32 5.12 85.56 0.44 2.75 16 10 C -0.15 -4.24 4.89 -19.84 -0.10 -4.34 16 11 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 12 C -0.21 -8.49 9.99 22.39 0.22 -8.27 16 13 C 0.11 5.52 6.65 22.58 0.15 5.67 16 14 O -0.23 -14.00 9.76 -22.71 -0.22 -14.22 16 15 C -0.41 -23.60 9.49 67.92 0.64 -22.95 16 16 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 17 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 18 N -0.92 -56.51 13.67 21.61 0.30 -56.21 16 19 Si 1.02 42.51 29.55 68.60 2.03 44.53 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 C -0.24 -10.07 9.17 22.39 0.21 -9.86 16 24 C -0.06 -1.92 7.85 22.25 0.17 -1.75 16 25 C 0.04 0.82 5.33 86.38 0.46 1.28 16 26 C 0.12 2.31 6.61 86.34 0.57 2.88 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.71 7.07 -2.38 -0.02 1.70 16 32 H 0.11 1.25 7.99 -2.39 -0.02 1.23 16 33 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.05 0.85 8.07 -2.38 -0.02 0.83 16 35 H 0.10 1.61 7.91 -2.38 -0.02 1.59 16 36 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 40 H 0.13 3.41 7.93 -2.91 -0.02 3.38 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 2.04 5.65 -2.39 -0.01 2.02 16 43 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.10 1.80 6.98 -2.39 -0.02 1.78 16 Total: -1.00 -74.88 362.12 2.69 -72.19 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.01 Total: 22.95 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 6.80 Total: -14.21 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -6.72 Total: -85.86 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.43 Total: -39.60 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -74.88 2.69 -72.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491488962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.968 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds