Wall clock time and date at job start Tue Mar 31 2020 12:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34639 * 117.00165 * 2 1 4 4 O 1.21514 * 119.99723 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00094 * 180.02562 * 3 2 1 6 6 C 1.46924 * 120.62818 * 179.97438 * 5 3 2 7 7 C 1.53199 * 108.77111 * 233.58047 * 6 5 3 8 8 C 1.53034 * 109.31327 * 305.36893 * 7 6 5 9 9 N 1.46505 * 109.45675 * 181.38722 * 8 7 6 10 10 C 1.39676 * 120.00079 * 154.97239 * 9 8 7 11 11 C 1.39012 * 120.03933 * 359.97201 * 10 9 8 12 12 C 1.38143 * 120.06228 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.14227 * 359.72769 * 12 11 10 14 14 C 1.38912 * 120.07871 * 0.55434 * 13 12 11 15 15 O 1.35751 * 120.03093 * 179.72008 * 14 13 12 16 16 C 1.34833 * 117.00044 * 174.18559 * 15 14 13 17 17 H 1.08001 * 119.99756 * 5.05336 * 16 15 14 18 18 C 1.38647 * 120.00273 * 185.05790 * 16 15 14 19 19 N 1.31562 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47045 * 90.00101 * 20 18 16 22 22 H 1.48501 * 109.46856 * 209.99702 * 20 18 16 23 23 H 1.48495 * 109.47115 * 329.99492 * 20 18 16 24 24 C 1.38746 * 120.04204 * 179.97438 * 10 9 8 25 25 C 1.53037 * 109.53034 * 61.37109 * 8 7 6 26 26 C 1.46923 * 120.62877 * 359.97247 * 5 3 2 27 27 H 1.08997 * 109.46806 * 300.00445 * 1 2 3 28 28 H 1.09003 * 109.46710 * 60.00033 * 1 2 3 29 29 H 1.08992 * 109.46730 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.58660 * 113.79894 * 6 5 3 31 31 H 1.08993 * 109.70869 * 353.43744 * 6 5 3 32 32 H 1.08998 * 109.49233 * 185.41089 * 7 6 5 33 33 H 1.09003 * 109.51886 * 65.33898 * 7 6 5 34 34 H 1.09004 * 109.45891 * 301.35145 * 8 7 6 35 35 H 0.96996 * 120.00220 * 334.96647 * 9 8 7 36 36 H 1.08000 * 119.96626 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.93082 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.96054 * 180.29241 * 13 12 11 39 39 H 0.96998 * 119.99725 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.07071 * 359.97438 * 24 10 9 41 41 H 1.08998 * 109.49459 * 58.57742 * 25 8 7 42 42 H 1.08995 * 109.49688 * 178.67667 * 25 8 7 43 43 H 1.09007 * 109.58851 * 246.20409 * 26 5 3 44 44 H 1.09002 * 109.58780 * 6.48414 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0906 2.5718 -0.0011 7 6 5.0817 2.6090 -1.1687 8 6 6.0234 1.4066 -1.0717 9 7 6.9938 1.4569 -2.1681 10 6 8.2331 0.8270 -2.0334 11 6 8.5470 0.1526 -0.8591 12 6 9.7728 -0.4701 -0.7251 13 6 10.6883 -0.4296 -1.7592 14 6 10.3832 0.2477 -2.9331 15 8 11.2856 0.2917 -3.9462 16 6 10.8827 0.8602 -5.1006 17 1 9.9109 1.3273 -5.1620 18 6 11.7158 0.8449 -6.2087 19 7 12.8998 0.2762 -6.1336 20 14 11.1573 1.6319 -7.8081 21 1 11.5689 3.0586 -7.8280 22 1 11.7803 0.9211 -8.9535 23 1 9.6789 1.5415 -7.9144 24 6 9.1525 0.8737 -3.0715 25 6 5.2123 0.1124 -1.1677 26 6 4.2229 0.0468 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 4.6275 2.7036 0.9383 31 1 3.3579 3.3702 -0.1183 32 1 5.6622 3.5304 -1.1238 33 1 4.5358 2.5685 -2.1113 34 1 6.5511 1.4346 -0.1183 35 1 6.7756 1.9276 -2.9877 36 1 7.8317 0.1154 -0.0507 37 1 10.0146 -0.9932 0.1884 38 1 11.6440 -0.9214 -1.6531 39 1 13.4829 0.2659 -6.9087 40 1 8.9111 1.3967 -3.9850 41 1 4.6647 0.0954 -2.1100 42 1 5.8858 -0.7433 -1.1221 43 1 4.7707 -0.0278 0.9390 44 1 3.5756 -0.8226 -0.1160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495090747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:21 Heat of formation + Delta-G solvation = -73.324511 kcal Electronic energy + Delta-G solvation = -26458.351753 eV Core-core repulsion = 22569.681960 eV Total energy + Delta-G solvation = -3888.669793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95154 -39.36197 -38.52209 -36.97185 -36.34291 -34.72595 -32.27106 -31.80671 -31.38649 -28.98235 -28.28871 -27.56960 -25.26885 -24.71643 -23.68444 -22.02206 -21.64252 -20.58221 -20.03024 -18.48037 -17.84460 -17.41281 -17.26002 -16.79324 -15.77379 -15.23393 -15.15297 -15.02400 -14.67056 -14.39048 -14.33345 -14.22284 -13.77074 -13.55026 -13.53417 -13.05797 -12.85768 -12.70805 -12.40693 -12.29225 -12.12598 -11.89083 -11.63485 -11.56030 -11.16986 -11.09170 -10.95573 -10.81869 -10.74034 -10.69099 -10.54257 -10.38307 -9.43604 -9.37157 -9.12616 -8.75787 -7.36258 -6.78945 -6.40854 -4.00114 1.83630 2.37720 2.50389 2.55939 3.14188 3.15058 3.19480 3.55029 3.67170 3.99647 4.45995 4.55058 4.70253 4.74868 4.81995 4.86971 4.89630 4.96263 5.10020 5.15566 5.17458 5.28444 5.37099 5.42532 5.44115 5.56793 5.66903 5.70824 5.82070 5.94075 5.97676 6.07632 6.17925 6.28048 6.36954 6.63986 6.65017 6.98278 7.03060 7.15519 7.38610 7.48810 7.66424 7.95271 8.00676 8.05287 8.18824 9.05318 9.77834 10.77470 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.002517 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.938630 B =11122.561892 C =11908.830159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.593 5.593 6 C 0.132 3.868 7 C -0.144 4.144 8 C 0.159 3.841 9 N -0.750 5.750 10 C 0.250 3.750 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.236 4.236 14 C 0.189 3.811 15 O -0.178 6.178 16 C -0.388 4.388 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.302 4.302 25 C -0.152 4.152 26 C 0.114 3.886 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.394 0.606 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.269 0.731 40 H 0.124 0.876 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.455 0.467 12.471 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.466 6.466 5 N -0.334 5.334 6 C 0.010 3.990 7 C -0.182 4.182 8 C 0.052 3.948 9 N -0.380 5.380 10 C 0.149 3.851 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.135 3.865 15 O -0.081 6.081 16 C -0.465 4.465 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.326 4.326 25 C -0.192 4.192 26 C -0.009 4.009 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.228 0.772 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.370 0.594 12.451 23.881 hybrid contribution -0.521 0.579 -1.230 1.455 sum -20.891 1.173 11.222 23.743 Atomic orbital electron populations 1.23197 0.74460 1.03485 1.02692 1.86243 1.24110 1.31015 1.87027 1.18039 0.83187 0.82128 0.76239 1.90986 1.64268 1.34968 1.56352 1.46982 1.01884 1.08803 1.75692 1.21617 0.95049 0.83728 0.98605 1.22239 0.97341 0.99362 0.99287 1.20715 0.88807 0.93250 0.92015 1.44582 1.14149 1.61092 1.18198 1.17451 0.84150 0.90255 0.93235 1.20080 0.99769 1.12351 0.98110 1.20378 0.92626 0.96284 0.96636 1.20047 1.01893 1.09648 0.94111 1.19076 0.87793 0.90747 0.88922 1.83988 1.35229 1.69444 1.19480 1.21286 1.03350 1.35577 0.86273 0.89214 1.25270 0.95331 0.97234 0.98753 1.70043 1.07969 1.41123 1.30819 0.85737 0.78809 0.78883 0.80117 1.19969 1.20306 1.19329 1.20507 0.96386 1.14724 1.00937 1.22484 0.98095 1.00124 0.98481 1.21774 0.93667 0.86266 0.99196 0.91894 0.91873 0.87945 0.90534 0.88276 0.89456 0.90938 0.90049 0.77177 0.87778 0.87249 0.86967 0.92121 0.85870 0.91283 0.89443 0.90787 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.67 9.20 -40.32 -0.37 -4.04 16 3 C 0.65 7.54 8.43 54.05 0.46 8.00 16 4 O -0.58 -8.17 15.55 -19.28 -0.30 -8.47 16 5 N -0.59 -5.79 2.97 -178.59 -0.53 -6.32 16 6 C 0.13 1.14 6.43 -3.71 -0.02 1.11 16 7 C -0.14 -1.27 5.55 -26.61 -0.15 -1.41 16 8 C 0.16 1.66 2.11 -67.89 -0.14 1.52 16 9 N -0.75 -10.27 5.25 -52.14 -0.27 -10.54 16 10 C 0.25 4.42 6.63 -83.81 -0.56 3.87 16 11 C -0.28 -4.67 8.84 -39.33 -0.35 -5.02 16 12 C -0.04 -0.71 10.03 -39.64 -0.40 -1.11 16 13 C -0.24 -5.05 9.99 -39.36 -0.39 -5.44 16 14 C 0.19 4.60 6.64 -39.14 -0.26 4.34 16 15 O -0.18 -5.13 9.76 0.04 0.00 -5.13 16 16 C -0.39 -10.90 9.49 30.88 0.29 -10.61 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 20 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.30 -6.50 9.01 -39.20 -0.35 -6.86 16 25 C -0.15 -1.50 5.59 -26.64 -0.15 -1.65 16 26 C 0.11 0.95 6.44 -3.74 -0.02 0.93 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.93 7.01 -51.93 -0.36 0.57 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.87 6.48 -51.93 -0.34 0.53 16 35 H 0.39 5.15 8.61 -40.82 -0.35 4.80 16 36 H 0.10 1.45 6.13 -52.49 -0.32 1.12 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.11 2.34 8.06 -52.48 -0.42 1.92 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.12 2.69 5.64 -52.49 -0.30 2.40 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.95 7.73 -51.93 -0.40 0.55 16 43 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.09 0.75 6.93 -51.93 -0.36 0.39 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -33.44 361.80 -7.43 -40.87 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.07 Total: 7.24 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.08 Total: -9.93 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.05 Total: -41.60 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.67 Total: -17.65 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.44 -7.43 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495090747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.454 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds