Wall clock time and date at job start Tue Mar 31 2020 12:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34639 * 117.00165 * 2 1 4 4 O 1.21514 * 119.99723 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00094 * 180.02562 * 3 2 1 6 6 C 1.46924 * 120.62818 * 179.97438 * 5 3 2 7 7 C 1.53199 * 108.77111 * 233.58047 * 6 5 3 8 8 C 1.53034 * 109.31327 * 305.36893 * 7 6 5 9 9 N 1.46505 * 109.45675 * 181.38722 * 8 7 6 10 10 C 1.39676 * 120.00079 * 154.97239 * 9 8 7 11 11 C 1.39012 * 120.03933 * 359.97201 * 10 9 8 12 12 C 1.38143 * 120.06228 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.14227 * 359.72769 * 12 11 10 14 14 C 1.38912 * 120.07871 * 0.55434 * 13 12 11 15 15 O 1.35751 * 120.03093 * 179.72008 * 14 13 12 16 16 C 1.34833 * 117.00044 * 174.18559 * 15 14 13 17 17 H 1.08001 * 119.99756 * 5.05336 * 16 15 14 18 18 C 1.38647 * 120.00273 * 185.05790 * 16 15 14 19 19 N 1.31562 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47045 * 90.00101 * 20 18 16 22 22 H 1.48501 * 109.46856 * 209.99702 * 20 18 16 23 23 H 1.48495 * 109.47115 * 329.99492 * 20 18 16 24 24 C 1.38746 * 120.04204 * 179.97438 * 10 9 8 25 25 C 1.53037 * 109.53034 * 61.37109 * 8 7 6 26 26 C 1.46923 * 120.62877 * 359.97247 * 5 3 2 27 27 H 1.08997 * 109.46806 * 300.00445 * 1 2 3 28 28 H 1.09003 * 109.46710 * 60.00033 * 1 2 3 29 29 H 1.08992 * 109.46730 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.58660 * 113.79894 * 6 5 3 31 31 H 1.08993 * 109.70869 * 353.43744 * 6 5 3 32 32 H 1.08998 * 109.49233 * 185.41089 * 7 6 5 33 33 H 1.09003 * 109.51886 * 65.33898 * 7 6 5 34 34 H 1.09004 * 109.45891 * 301.35145 * 8 7 6 35 35 H 0.96996 * 120.00220 * 334.96647 * 9 8 7 36 36 H 1.08000 * 119.96626 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.93082 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.96054 * 180.29241 * 13 12 11 39 39 H 0.96998 * 119.99725 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.07071 * 359.97438 * 24 10 9 41 41 H 1.08998 * 109.49459 * 58.57742 * 25 8 7 42 42 H 1.08995 * 109.49688 * 178.67667 * 25 8 7 43 43 H 1.09007 * 109.58851 * 246.20409 * 26 5 3 44 44 H 1.09002 * 109.58780 * 6.48414 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0906 2.5718 -0.0011 7 6 5.0817 2.6090 -1.1687 8 6 6.0234 1.4066 -1.0717 9 7 6.9938 1.4569 -2.1681 10 6 8.2331 0.8270 -2.0334 11 6 8.5470 0.1526 -0.8591 12 6 9.7728 -0.4701 -0.7251 13 6 10.6883 -0.4296 -1.7592 14 6 10.3832 0.2477 -2.9331 15 8 11.2856 0.2917 -3.9462 16 6 10.8827 0.8602 -5.1006 17 1 9.9109 1.3273 -5.1620 18 6 11.7158 0.8449 -6.2087 19 7 12.8998 0.2762 -6.1336 20 14 11.1573 1.6319 -7.8081 21 1 11.5689 3.0586 -7.8280 22 1 11.7803 0.9211 -8.9535 23 1 9.6789 1.5415 -7.9144 24 6 9.1525 0.8737 -3.0715 25 6 5.2123 0.1124 -1.1677 26 6 4.2229 0.0468 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 4.6275 2.7036 0.9383 31 1 3.3579 3.3702 -0.1183 32 1 5.6622 3.5304 -1.1238 33 1 4.5358 2.5685 -2.1113 34 1 6.5511 1.4346 -0.1183 35 1 6.7756 1.9276 -2.9877 36 1 7.8317 0.1154 -0.0507 37 1 10.0146 -0.9932 0.1884 38 1 11.6440 -0.9214 -1.6531 39 1 13.4829 0.2659 -6.9087 40 1 8.9111 1.3967 -3.9850 41 1 4.6647 0.0954 -2.1100 42 1 5.8858 -0.7433 -1.1221 43 1 4.7707 -0.0278 0.9390 44 1 3.5756 -0.8226 -0.1160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495090747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:20 Heat of formation + Delta-G solvation = -95.785125 kcal Electronic energy + Delta-G solvation = -26459.325718 eV Core-core repulsion = 22569.681960 eV Total energy + Delta-G solvation = -3889.643759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75596 -40.80025 -39.69362 -38.31522 -37.34652 -35.92917 -34.21288 -32.91365 -32.17022 -30.51508 -29.53940 -28.38816 -27.22578 -25.61408 -24.45785 -23.37183 -22.85278 -21.88125 -20.93985 -19.74340 -19.18559 -18.92932 -18.16385 -17.59999 -17.08225 -16.79136 -16.37987 -15.95932 -15.86032 -15.53749 -15.49473 -15.38612 -15.04608 -14.98409 -14.51620 -14.35536 -14.05503 -13.77116 -13.52135 -13.49445 -13.19450 -13.04564 -12.93986 -12.71076 -12.42940 -12.30063 -12.15926 -12.05720 -11.92737 -11.80856 -11.62863 -11.58910 -11.24634 -10.89670 -10.56270 -9.89101 -9.06850 -8.43950 -8.19599 -6.11858 0.81022 0.96151 1.13411 1.34518 1.44795 1.51897 1.65700 2.19109 2.51424 2.89389 2.91540 3.30146 3.62822 3.69337 3.83704 4.00685 4.06120 4.26852 4.29190 4.32453 4.35998 4.36234 4.47098 4.51690 4.66454 4.67455 4.72409 4.76916 4.81366 4.83463 4.94707 5.03683 5.11927 5.18399 5.19237 5.25745 5.30659 5.43845 5.51560 5.79365 5.85579 6.07124 6.15536 6.19924 6.65244 6.88043 7.01747 7.14268 7.86158 8.79752 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.002517 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.938630 B =11122.561892 C =11908.830159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.373 6.373 3 C 0.644 3.356 4 O -0.609 6.609 5 N -0.591 5.591 6 C 0.132 3.868 7 C -0.134 4.134 8 C 0.155 3.845 9 N -0.740 5.740 10 C 0.260 3.740 11 C -0.259 4.259 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.150 3.850 15 O -0.234 6.234 16 C -0.408 4.408 17 H 0.099 0.901 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.318 4.318 25 C -0.145 4.145 26 C 0.118 3.882 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.397 0.603 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.103 0.897 39 H 0.271 0.729 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.234 0.597 14.512 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.287 6.287 3 C 0.399 3.601 4 O -0.501 6.501 5 N -0.331 5.331 6 C 0.011 3.989 7 C -0.172 4.172 8 C 0.050 3.950 9 N -0.369 5.369 10 C 0.156 3.844 11 C -0.282 4.282 12 C -0.045 4.045 13 C -0.284 4.284 14 C 0.099 3.901 15 O -0.141 6.141 16 C -0.484 4.484 17 H 0.116 0.884 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.342 4.342 25 C -0.185 4.185 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.231 0.769 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.218 0.722 14.546 27.408 hybrid contribution 0.083 0.496 -1.557 1.636 sum -23.135 1.218 12.989 26.560 Atomic orbital electron populations 1.23475 0.72970 1.05531 1.02452 1.86248 1.25618 1.30099 1.86708 1.18279 0.83703 0.82152 0.76010 1.90962 1.65110 1.36109 1.57960 1.47124 1.01474 1.09650 1.74873 1.21686 0.94688 0.83143 0.99387 1.22144 0.96956 0.98978 0.99157 1.20974 0.88456 0.94421 0.91100 1.44746 1.13167 1.59639 1.19326 1.17509 0.84727 0.89700 0.92434 1.20590 0.99820 1.09502 0.98264 1.20844 0.91777 0.95143 0.96690 1.20273 1.02937 1.10584 0.94630 1.19668 0.88754 0.92562 0.89092 1.83947 1.37569 1.71855 1.20703 1.21758 1.03943 1.35814 0.86879 0.88408 1.26564 0.95273 0.97814 1.02588 1.70193 1.09746 1.43994 1.32178 0.84602 0.78949 0.78006 0.74729 1.18858 1.19634 1.17839 1.20517 0.96589 1.15143 1.01902 1.22388 0.98080 0.99289 0.98743 1.21840 0.93294 0.85853 0.99417 0.91919 0.92399 0.84767 0.88290 0.89206 0.88535 0.91730 0.88807 0.76852 0.83424 0.83006 0.87871 0.91968 0.87184 0.92478 0.89826 0.88490 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -6.59 9.20 -55.48 -0.51 -7.11 16 3 C 0.64 13.68 8.43 129.79 1.09 14.78 16 4 O -0.61 -16.61 15.55 19.80 0.31 -16.30 16 5 N -0.59 -9.75 2.97 -949.33 -2.82 -12.57 16 6 C 0.13 1.86 6.43 86.37 0.56 2.42 16 7 C -0.13 -1.93 5.55 30.67 0.17 -1.76 16 8 C 0.16 2.64 2.11 45.01 0.09 2.73 16 9 N -0.74 -18.18 5.25 -318.88 -1.67 -19.86 16 10 C 0.26 8.61 6.63 38.20 0.25 8.86 16 11 C -0.26 -7.54 8.84 22.43 0.20 -7.35 16 12 C -0.03 -0.84 10.03 22.23 0.22 -0.62 16 13 C -0.26 -11.39 9.99 22.42 0.22 -11.16 16 14 C 0.15 7.63 6.64 22.56 0.15 7.78 16 15 O -0.23 -14.41 9.76 -22.78 -0.22 -14.63 16 16 C -0.41 -24.15 9.49 67.92 0.64 -23.51 16 17 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 18 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 19 N -0.92 -57.51 13.67 21.61 0.30 -57.21 16 20 Si 1.02 43.55 29.55 68.60 2.03 45.58 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 24 C -0.32 -13.87 9.01 22.52 0.20 -13.67 16 25 C -0.15 -2.32 5.59 30.66 0.17 -2.15 16 26 C 0.12 1.51 6.44 86.35 0.56 2.06 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.50 7.01 -2.39 -0.02 1.49 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.45 6.48 -2.38 -0.02 1.43 16 35 H 0.40 9.60 8.61 -92.71 -0.80 8.80 16 36 H 0.15 3.09 6.13 -2.91 -0.02 3.07 16 37 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.11 4.98 5.64 -2.91 -0.02 4.97 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.45 7.73 -2.39 -0.02 1.44 16 43 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.10 1.22 6.93 -2.39 -0.02 1.21 16 Total: -1.00 -78.83 361.80 3.84 -75.00 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.23 Total: 27.90 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 6.20 Total: -20.81 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -4.20 Total: -89.63 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.43 Total: -38.04 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -78.83 3.84 -75.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495090747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.787 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds