Wall clock time and date at job start Tue Mar 31 2020 12:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34638 * 116.99701 * 2 1 4 4 O 1.21512 * 120.00338 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00334 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47365 * 179.97438 * 6 5 3 8 8 N 1.46505 * 109.47066 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99960 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99737 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00194 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47010 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47465 * 305.00010 * 12 11 9 14 14 C 1.50698 * 109.47080 * 65.00685 * 12 11 9 15 15 H 1.08002 * 120.00223 * 26.94016 * 14 12 11 16 16 C 1.37886 * 120.00006 * 206.93845 * 14 12 11 17 17 N 1.31507 * 120.00030 * 186.61954 * 16 14 12 18 18 Si 1.86801 * 119.99698 * 6.90022 * 16 14 12 19 19 H 1.48503 * 109.46742 * 274.25466 * 18 16 14 20 20 H 1.48500 * 109.47460 * 34.25082 * 18 16 14 21 21 H 1.48499 * 109.46928 * 154.25467 * 18 16 14 22 22 C 1.50706 * 109.46940 * 184.99987 * 12 11 9 23 23 C 1.38233 * 119.99857 * 297.92917 * 22 12 11 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 12 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 118.19592 * 22 12 11 28 28 H 1.09007 * 109.46849 * 299.99724 * 1 2 3 29 29 H 1.08991 * 109.47431 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.47204 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99741 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.47042 * 59.99941 * 6 5 3 33 33 H 1.09005 * 109.47085 * 300.00475 * 6 5 3 34 34 H 1.09000 * 109.46918 * 60.00074 * 7 6 5 35 35 H 1.09000 * 109.47323 * 299.99993 * 7 6 5 36 36 H 0.96995 * 120.00055 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.46914 * 60.00574 * 11 9 8 38 38 H 1.09000 * 109.47087 * 300.00639 * 11 9 8 39 39 H 0.96994 * 119.99996 * 180.27656 * 17 16 14 40 40 H 1.07994 * 120.00554 * 359.97438 * 23 22 12 41 41 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 42 42 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 43 43 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00162 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5910 2.3751 -0.0010 8 7 6.2560 3.6805 -0.0021 9 6 7.6020 3.7511 -0.0017 10 8 8.2625 2.7339 -0.0009 11 6 8.2861 5.0938 -0.0024 12 6 9.8029 4.8933 -0.0024 13 1 10.0860 4.2617 0.8396 14 6 10.2222 4.2318 -1.2899 15 1 9.6280 4.3619 -2.1823 16 6 11.3644 3.4604 -1.3285 17 7 11.8021 2.9906 -2.4762 18 14 12.2858 3.0762 0.2504 19 1 13.2318 4.1803 0.5526 20 1 11.3171 2.9348 1.3670 21 1 13.0410 1.8081 0.0867 22 6 10.4864 6.2308 0.1208 23 6 10.3122 7.1890 -0.8602 24 6 10.9356 8.4174 -0.7449 25 6 11.7405 8.6843 0.3468 26 6 11.9189 7.7242 1.3252 27 6 11.2919 6.4974 1.2121 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.9374 0.4567 -0.0005 32 1 3.7817 3.1328 0.8889 33 1 3.7809 3.1324 -0.8911 34 1 5.8838 1.8177 -0.8907 35 1 5.8839 1.8185 0.8893 36 1 5.7278 4.4940 -0.0025 37 1 7.9930 5.6513 0.8872 38 1 7.9935 5.6503 -0.8928 39 1 12.6033 2.4446 -2.5029 40 1 9.6867 6.9790 -1.7151 41 1 10.7960 9.1676 -1.5092 42 1 12.2297 9.6431 0.4354 43 1 12.5474 7.9329 2.1783 44 1 11.4312 5.7474 1.9766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495934182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:00 Heat of formation + Delta-G solvation = -93.301299 kcal Electronic energy + Delta-G solvation = -25928.043114 eV Core-core repulsion = 22038.507062 eV Total energy + Delta-G solvation = -3889.536052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68729 -39.32292 -38.42832 -37.21726 -35.77722 -34.25687 -33.75252 -31.69374 -30.23096 -29.92072 -28.72398 -27.49208 -25.81564 -23.27732 -22.41579 -21.84617 -21.68877 -20.30127 -19.29465 -19.00160 -17.22849 -16.98890 -16.91137 -16.58603 -15.91775 -15.58086 -15.53395 -14.79325 -14.57924 -14.42771 -14.25723 -14.08915 -13.78394 -13.47749 -13.06838 -12.73710 -12.62490 -12.38950 -12.38585 -12.18674 -11.96841 -11.85356 -11.67747 -11.12889 -11.07647 -10.94621 -10.81246 -10.51457 -10.36551 -9.91610 -9.62189 -9.55940 -9.20760 -9.01830 -8.76828 -8.45968 -8.21852 -7.83063 -6.00137 -3.96192 1.82227 2.08643 2.14231 2.52620 3.37197 3.40274 3.45483 3.48811 3.50185 4.09090 4.50621 4.51258 4.55804 4.82154 4.86751 4.90507 5.14697 5.21961 5.25914 5.50488 5.52020 5.55136 5.67784 5.71827 5.73962 5.91132 5.94743 5.98226 6.03273 6.06253 6.23003 6.31786 6.55747 6.68179 6.70349 6.81515 7.02668 7.04878 7.13595 7.25210 7.57699 7.70364 7.81085 7.89132 8.01024 8.51275 8.89286 8.99408 9.64156 11.12960 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.002546 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.711801 B =10996.252190 C =11998.376883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.648 3.352 4 O -0.572 6.572 5 N -0.705 5.705 6 C 0.127 3.873 7 C 0.111 3.889 8 N -0.746 5.746 9 C 0.516 3.484 10 O -0.497 6.497 11 C -0.114 4.114 12 C 0.048 3.952 13 H 0.054 0.946 14 C -0.483 4.483 15 H 0.072 0.928 16 C 0.083 3.917 17 N -0.899 5.899 18 Si 0.868 3.132 19 H -0.275 1.275 20 H -0.261 1.261 21 H -0.292 1.292 22 C -0.040 4.040 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.124 4.124 27 C -0.139 4.139 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.262 0.738 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 1.167 6.811 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.400 3.600 4 O -0.461 6.461 5 N -0.365 5.365 6 C 0.004 3.996 7 C -0.014 4.014 8 N -0.403 5.403 9 C 0.302 3.698 10 O -0.368 6.368 11 C -0.155 4.155 12 C 0.029 3.971 13 H 0.072 0.928 14 C -0.520 4.520 15 H 0.090 0.910 16 C -0.119 4.119 17 N -0.536 5.536 18 Si 0.696 3.304 19 H -0.200 1.200 20 H -0.186 1.186 21 H -0.218 1.218 22 C -0.041 4.041 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.167 4.167 26 C -0.142 4.142 27 C -0.157 4.157 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.247 0.753 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.230 0.770 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.274 0.747 6.712 17.620 hybrid contribution 0.529 -0.259 0.633 0.865 sum -15.745 0.488 7.346 17.381 Atomic orbital electron populations 1.23208 0.74216 1.03540 1.02797 1.86247 1.24344 1.30971 1.87055 1.18065 0.83302 0.82231 0.76363 1.91013 1.64620 1.34893 1.55600 1.44414 1.03150 1.10701 1.78192 1.21476 0.91383 0.83180 1.03561 1.21238 0.89253 0.87586 1.03342 1.45943 1.07332 1.07535 1.79450 1.20864 0.80579 0.92816 0.75492 1.90754 1.63753 1.36839 1.45494 1.21621 0.98411 0.93234 1.02199 1.18246 0.88770 0.89859 1.00267 0.92821 1.20600 1.09130 1.28446 0.93867 0.91025 1.24874 0.96592 0.94931 0.95503 1.69885 1.23516 1.35502 1.24745 0.86954 0.79990 0.77908 0.85557 1.20035 1.18588 1.21837 1.20763 0.95572 0.95949 0.91772 1.20953 1.00006 0.92485 0.98432 1.21061 0.98327 0.97320 0.97728 1.20864 1.01109 0.98986 0.95771 1.20956 1.00145 0.94245 0.98900 1.21056 0.99448 0.96620 0.98567 0.91812 0.91765 0.87900 0.75330 0.90435 0.90308 0.90739 0.91054 0.76974 0.91075 0.89556 0.92817 0.86209 0.87151 0.87398 0.87351 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.64 10.62 -40.32 -0.43 -4.07 16 3 C 0.65 7.42 8.75 54.06 0.47 7.89 16 4 O -0.57 -8.18 16.13 -19.28 -0.31 -8.49 16 5 N -0.70 -6.65 5.56 -65.28 -0.36 -7.01 16 6 C 0.13 1.19 5.79 -4.05 -0.02 1.17 16 7 C 0.11 1.26 5.79 -4.04 -0.02 1.23 16 8 N -0.75 -9.64 5.56 -60.29 -0.33 -9.97 16 9 C 0.52 9.40 7.58 -10.99 -0.08 9.32 16 10 O -0.50 -11.61 14.98 5.56 0.08 -11.52 16 11 C -0.11 -2.02 4.93 -27.88 -0.14 -2.15 16 12 C 0.05 1.07 1.21 -92.92 -0.11 0.95 16 13 H 0.05 1.29 4.87 -51.93 -0.25 1.04 16 14 C -0.48 -13.07 6.97 -34.44 -0.24 -13.31 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 17 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 18 Si 0.87 22.47 26.62 -169.99 -4.52 17.95 16 19 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.26 -6.57 6.29 56.52 0.36 -6.21 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 C -0.04 -0.82 4.52 -104.62 -0.47 -1.30 16 23 C -0.10 -1.93 8.86 -39.58 -0.35 -2.28 16 24 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 25 C -0.15 -2.42 10.05 -39.58 -0.40 -2.81 16 26 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 27 C -0.14 -2.71 9.08 -39.58 -0.36 -3.07 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.41 3.12 8.58 -40.82 -0.35 2.77 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 3.83 8.47 -40.82 -0.35 3.49 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.41 7.69 -51.93 -0.40 1.01 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.12 2.24 7.72 -52.49 -0.40 1.84 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.11 2.05 7.91 -52.49 -0.42 1.64 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -36.45 374.49 -7.44 -43.89 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.42 Total: 6.28 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.55 Total: -5.63 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.08 Total: -44.05 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.66 Total: -24.08 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.52 Total: 17.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.45 -7.44 -43.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495934182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.409 kcal (2) G-P(sol) polarization free energy of solvation -36.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds