Wall clock time and date at job start Tue Mar 31 2020 12:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34638 * 116.99701 * 2 1 4 4 O 1.21512 * 120.00338 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00334 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47365 * 179.97438 * 6 5 3 8 8 N 1.46505 * 109.47066 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99960 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99737 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00194 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47010 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47465 * 305.00010 * 12 11 9 14 14 C 1.50698 * 109.47080 * 65.00685 * 12 11 9 15 15 H 1.08002 * 120.00223 * 26.94016 * 14 12 11 16 16 C 1.37886 * 120.00006 * 206.93845 * 14 12 11 17 17 N 1.31507 * 120.00030 * 186.61954 * 16 14 12 18 18 Si 1.86801 * 119.99698 * 6.90022 * 16 14 12 19 19 H 1.48503 * 109.46742 * 274.25466 * 18 16 14 20 20 H 1.48500 * 109.47460 * 34.25082 * 18 16 14 21 21 H 1.48499 * 109.46928 * 154.25467 * 18 16 14 22 22 C 1.50706 * 109.46940 * 184.99987 * 12 11 9 23 23 C 1.38233 * 119.99857 * 297.92917 * 22 12 11 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 12 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 118.19592 * 22 12 11 28 28 H 1.09007 * 109.46849 * 299.99724 * 1 2 3 29 29 H 1.08991 * 109.47431 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.47204 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99741 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.47042 * 59.99941 * 6 5 3 33 33 H 1.09005 * 109.47085 * 300.00475 * 6 5 3 34 34 H 1.09000 * 109.46918 * 60.00074 * 7 6 5 35 35 H 1.09000 * 109.47323 * 299.99993 * 7 6 5 36 36 H 0.96995 * 120.00055 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.46914 * 60.00574 * 11 9 8 38 38 H 1.09000 * 109.47087 * 300.00639 * 11 9 8 39 39 H 0.96994 * 119.99996 * 180.27656 * 17 16 14 40 40 H 1.07994 * 120.00554 * 359.97438 * 23 22 12 41 41 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 42 42 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 43 43 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00162 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5910 2.3751 -0.0010 8 7 6.2560 3.6805 -0.0021 9 6 7.6020 3.7511 -0.0017 10 8 8.2625 2.7339 -0.0009 11 6 8.2861 5.0938 -0.0024 12 6 9.8029 4.8933 -0.0024 13 1 10.0860 4.2617 0.8396 14 6 10.2222 4.2318 -1.2899 15 1 9.6280 4.3619 -2.1823 16 6 11.3644 3.4604 -1.3285 17 7 11.8021 2.9906 -2.4762 18 14 12.2858 3.0762 0.2504 19 1 13.2318 4.1803 0.5526 20 1 11.3171 2.9348 1.3670 21 1 13.0410 1.8081 0.0867 22 6 10.4864 6.2308 0.1208 23 6 10.3122 7.1890 -0.8602 24 6 10.9356 8.4174 -0.7449 25 6 11.7405 8.6843 0.3468 26 6 11.9189 7.7242 1.3252 27 6 11.2919 6.4974 1.2121 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.9374 0.4567 -0.0005 32 1 3.7817 3.1328 0.8889 33 1 3.7809 3.1324 -0.8911 34 1 5.8838 1.8177 -0.8907 35 1 5.8839 1.8185 0.8893 36 1 5.7278 4.4940 -0.0025 37 1 7.9930 5.6513 0.8872 38 1 7.9935 5.6503 -0.8928 39 1 12.6033 2.4446 -2.5029 40 1 9.6867 6.9790 -1.7151 41 1 10.7960 9.1676 -1.5092 42 1 12.2297 9.6431 0.4354 43 1 12.5474 7.9329 2.1783 44 1 11.4312 5.7474 1.9766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495934182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:59 Heat of formation + Delta-G solvation = -121.089009 kcal Electronic energy + Delta-G solvation = -25929.248079 eV Core-core repulsion = 22038.507062 eV Total energy + Delta-G solvation = -3890.741018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53377 -40.76068 -39.81336 -38.07142 -36.81383 -35.84454 -35.00839 -33.70605 -31.60234 -31.09814 -29.92932 -28.33969 -27.45917 -24.61217 -23.70843 -23.22485 -22.55524 -21.67114 -20.77141 -19.90399 -19.01493 -18.20572 -17.87552 -17.73208 -17.21490 -16.78154 -16.65050 -16.29489 -15.86811 -15.70964 -15.37105 -15.31664 -15.00023 -14.75671 -14.44828 -14.37849 -14.09879 -13.86873 -13.66688 -13.28628 -13.05797 -12.97642 -12.86794 -12.76160 -12.67930 -12.07741 -11.88412 -11.87943 -11.81831 -11.77571 -11.46870 -11.02006 -10.71325 -10.56687 -10.38769 -9.99152 -9.61161 -9.29486 -8.21619 -6.16833 0.69104 0.74296 1.05062 1.31034 1.34862 1.42724 1.64658 1.93070 2.39271 2.40470 3.08616 3.23147 3.33131 3.62064 4.00880 4.12806 4.14025 4.31729 4.32842 4.33530 4.37209 4.38019 4.46153 4.51894 4.66210 4.68322 4.81376 4.82783 4.86856 4.89135 5.04660 5.13782 5.24264 5.31458 5.40270 5.41887 5.54661 5.71215 5.77776 5.83137 6.03937 6.24943 6.34814 6.36915 6.72208 6.82181 7.18387 7.45413 7.53531 8.95572 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.002546 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.711801 B =10996.252190 C =11998.376883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.646 3.354 4 O -0.604 6.604 5 N -0.697 5.697 6 C 0.139 3.861 7 C 0.115 3.885 8 N -0.724 5.724 9 C 0.513 3.487 10 O -0.559 6.559 11 C -0.112 4.112 12 C 0.049 3.951 13 H 0.035 0.965 14 C -0.459 4.459 15 H 0.037 0.963 16 C 0.021 3.979 17 N -0.953 5.953 18 Si 0.919 3.081 19 H -0.263 1.263 20 H -0.254 1.254 21 H -0.300 1.300 22 C -0.063 4.063 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.157 4.157 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.420 0.580 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.416 0.584 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.258 0.742 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 3.367 8.549 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.399 3.601 4 O -0.496 6.496 5 N -0.358 5.358 6 C 0.016 3.984 7 C -0.010 4.010 8 N -0.380 5.380 9 C 0.301 3.699 10 O -0.435 6.435 11 C -0.152 4.152 12 C 0.029 3.971 13 H 0.053 0.947 14 C -0.497 4.497 15 H 0.055 0.945 16 C -0.175 4.175 17 N -0.595 5.595 18 Si 0.746 3.254 19 H -0.188 1.188 20 H -0.178 1.178 21 H -0.227 1.227 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.159 4.159 26 C -0.143 4.143 27 C -0.175 4.175 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.257 0.743 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.067 0.933 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.138 2.977 8.478 19.350 hybrid contribution 0.634 -0.837 0.087 1.054 sum -16.503 2.140 8.565 18.716 Atomic orbital electron populations 1.23521 0.72581 1.05685 1.02696 1.86263 1.25974 1.29950 1.86688 1.18208 0.83571 0.82305 0.76005 1.90989 1.65375 1.35987 1.57218 1.44368 1.02816 1.11167 1.77448 1.21322 0.89582 0.83325 1.04151 1.21228 0.90428 0.86507 1.02788 1.45638 1.05936 1.09252 1.77191 1.21010 0.81953 0.92206 0.74771 1.90735 1.65442 1.38522 1.48776 1.21570 0.95426 0.93605 1.04580 1.18115 0.91988 0.90393 0.96571 0.94708 1.20838 1.07241 1.26986 0.94660 0.94522 1.25591 0.98238 0.95877 0.97826 1.70027 1.24693 1.38021 1.26724 0.86136 0.79081 0.77534 0.82697 1.18761 1.17837 1.22664 1.20520 0.96852 0.95519 0.93504 1.21026 1.00971 0.93547 0.98022 1.21413 0.97355 0.96788 0.98679 1.21336 0.99823 1.00172 0.94546 1.21329 0.99621 0.93242 1.00088 1.21198 0.99865 0.97989 0.98467 0.91852 0.91987 0.84668 0.74262 0.89469 0.90077 0.92032 0.91004 0.74660 0.87344 0.88292 0.93279 0.86885 0.84237 0.83648 0.84362 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.56 113.37 1.20 1.79 16 2 O -0.38 -6.91 10.62 -55.47 -0.59 -7.50 16 3 C 0.65 14.18 8.75 129.79 1.14 15.32 16 4 O -0.60 -16.80 16.13 19.80 0.32 -16.48 16 5 N -0.70 -12.41 5.56 -590.85 -3.29 -15.69 16 6 C 0.14 2.41 5.79 86.38 0.50 2.91 16 7 C 0.12 2.53 5.79 86.38 0.50 3.03 16 8 N -0.72 -17.88 5.56 -463.06 -2.57 -20.45 16 9 C 0.51 18.64 7.58 87.66 0.66 19.30 16 10 O -0.56 -26.78 14.98 -3.03 -0.05 -26.83 16 11 C -0.11 -3.85 4.93 29.85 0.15 -3.70 16 12 C 0.05 2.18 1.21 -12.29 -0.01 2.16 16 13 H 0.03 1.69 4.87 -2.39 -0.01 1.68 16 14 C -0.46 -25.69 6.97 25.60 0.18 -25.51 16 15 H 0.04 2.25 8.06 -2.91 -0.02 2.22 16 16 C 0.02 1.25 5.47 84.66 0.46 1.72 16 17 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 18 Si 0.92 47.69 26.62 68.60 1.83 49.52 16 19 H -0.26 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.25 -12.70 6.29 99.48 0.63 -12.08 16 21 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 22 C -0.06 -2.56 4.52 -19.87 -0.09 -2.65 16 23 C -0.12 -4.34 8.86 22.27 0.20 -4.14 16 24 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 25 C -0.14 -3.94 10.05 22.27 0.22 -3.71 16 26 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 27 C -0.16 -5.83 9.08 22.27 0.20 -5.62 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.42 5.97 8.58 -92.70 -0.80 5.18 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.42 7.12 8.47 -92.71 -0.79 6.33 16 37 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.10 3.14 7.69 -2.39 -0.02 3.12 16 39 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 40 H 0.11 4.20 7.72 -2.91 -0.02 4.18 16 41 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 44 H 0.11 3.88 7.91 -2.91 -0.02 3.86 16 Total: -1.00 -83.04 374.49 1.07 -81.98 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.64 Total: 23.21 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.75 Total: -6.27 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -5.56 Total: -97.63 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.31 Total: -50.81 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.83 Total: 49.52 kcal Total: -83.04 1.07 -81.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495934182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.111 kcal (2) G-P(sol) polarization free energy of solvation -83.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds