Wall clock time and date at job start Tue Mar 31 2020 13:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 120.00118 * 2 1 4 4 C 1.31000 * 119.99975 * 179.97438 * 2 1 3 5 5 C 1.50701 * 119.99957 * 5.46158 * 4 2 1 6 6 N 1.46501 * 109.46727 * 125.44833 * 5 4 2 7 7 C 1.34781 * 119.99924 * 180.02562 * 6 5 4 8 8 O 1.21367 * 119.99949 * 0.02562 * 7 6 5 9 9 C 1.49307 * 119.99978 * 179.97438 * 7 6 5 10 10 O 1.21384 * 120.00300 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99665 * 179.97438 * 9 7 6 12 12 C 1.39199 * 119.99975 * 179.97438 * 11 9 7 13 13 C 1.36218 * 126.27002 * 0.18163 * 12 11 9 14 14 C 1.39696 * 107.85655 * 180.23541 * 13 12 11 15 15 C 1.50699 * 125.76891 * 179.73411 * 14 13 12 16 16 N 1.30845 * 108.45892 * 359.75650 * 14 13 12 17 17 N 1.35850 * 126.27250 * 179.97438 * 12 11 9 18 18 C 1.46500 * 126.10014 * 0.03308 * 17 12 11 19 19 C 1.50696 * 109.47183 * 269.71241 * 18 17 12 20 20 H 1.08001 * 119.99860 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00214 * 179.72606 * 19 18 17 22 22 N 1.31519 * 120.00118 * 0.27187 * 21 19 18 23 23 Si 1.86804 * 120.00289 * 180.27364 * 21 19 18 24 24 H 1.48494 * 109.46887 * 59.99590 * 23 21 19 25 25 H 1.48501 * 109.47334 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46704 * 299.99693 * 23 21 19 27 27 H 1.08991 * 109.47146 * 234.91933 * 1 2 3 28 28 H 1.09000 * 109.46642 * 354.92294 * 1 2 3 29 29 H 1.09002 * 109.46777 * 114.91773 * 1 2 3 30 30 H 1.09002 * 109.46575 * 269.99202 * 3 2 1 31 31 H 1.08997 * 109.47280 * 29.99762 * 3 2 1 32 32 H 1.09006 * 109.46873 * 149.99668 * 3 2 1 33 33 H 1.08006 * 120.00167 * 185.46721 * 4 2 1 34 34 H 1.08998 * 109.47370 * 5.44995 * 5 4 2 35 35 H 1.08998 * 109.47206 * 245.44571 * 5 4 2 36 36 H 0.97003 * 120.00445 * 359.97438 * 6 5 4 37 37 H 0.97000 * 120.00489 * 0.02562 * 11 9 7 38 38 H 1.07992 * 126.07248 * 359.97438 * 13 12 11 39 39 H 1.08994 * 109.47428 * 270.00465 * 15 14 13 40 40 H 1.09007 * 109.46919 * 30.00212 * 15 14 13 41 41 H 1.09005 * 109.46693 * 149.99953 * 15 14 13 42 42 H 1.09001 * 109.47187 * 149.71163 * 18 17 12 43 43 H 1.09007 * 109.47117 * 29.70992 * 18 17 12 44 44 H 0.97003 * 120.00017 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4136 -2.4367 -0.1231 6 7 1.9561 -3.2070 -1.2450 7 6 1.4377 -4.4139 -1.5470 8 8 0.5212 -4.8623 -0.8898 9 6 1.9901 -5.1987 -2.6908 10 8 2.9065 -4.7500 -3.3484 11 7 1.4721 -6.4058 -2.9923 12 6 1.9867 -7.1373 -4.0590 13 6 3.0089 -6.7597 -4.8764 14 6 3.2044 -7.7756 -5.8151 15 6 4.2327 -7.7712 -6.9166 16 7 2.3433 -8.7315 -5.5764 17 7 1.5643 -8.3602 -4.4730 18 6 0.4824 -9.1474 -3.8762 19 6 1.0454 -10.0410 -2.8012 20 1 2.1033 -10.0245 -2.5846 21 6 0.2092 -10.8758 -2.0908 22 7 -1.0791 -10.8963 -2.3549 23 14 0.9059 -11.9779 -0.7531 24 1 1.5501 -11.1418 0.2914 25 1 -0.1916 -12.7715 -0.1440 26 1 1.9129 -12.8962 -1.3430 27 1 -0.3633 -0.5906 0.8409 28 1 -0.3632 1.0237 0.0909 29 1 -0.3633 -0.4330 -0.9320 30 1 2.4423 1.6196 -1.0277 31 1 1.6715 2.0648 0.5138 32 1 3.2130 1.1747 0.5139 33 1 3.2384 -1.1366 0.0896 34 1 0.3573 -2.2334 -0.2990 35 1 1.5251 -3.0087 0.7980 36 1 2.6878 -2.8481 -1.7710 37 1 0.7400 -6.7645 -2.4667 38 1 3.5661 -5.8368 -4.8130 39 1 3.8050 -7.3189 -7.8113 40 1 5.1027 -7.1961 -6.5992 41 1 4.5346 -8.7954 -7.1360 42 1 0.0101 -9.7580 -4.6458 43 1 -0.2575 -8.4761 -3.4401 44 1 -1.6674 -11.4834 -1.8549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517210907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:40 Heat of formation + Delta-G solvation = 17.881126 kcal Electronic energy + Delta-G solvation = -26111.340428 eV Core-core repulsion = 22258.918359 eV Total energy + Delta-G solvation = -3852.422069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15039 -40.14619 -38.53194 -37.33385 -35.21790 -34.28412 -33.72328 -32.06745 -29.70147 -29.20156 -28.46430 -28.15770 -26.06458 -25.57127 -23.61638 -22.75116 -21.04006 -20.01577 -19.69382 -18.52429 -17.66793 -16.94646 -16.74855 -16.32323 -16.19696 -15.74193 -15.26597 -14.89601 -14.54009 -14.43061 -14.32568 -14.11935 -13.84206 -13.69140 -12.96990 -12.90621 -12.78283 -12.68900 -12.54891 -12.32082 -12.07221 -12.01380 -11.86464 -11.65880 -11.45737 -11.33104 -11.07958 -10.83905 -10.53423 -10.31190 -9.87738 -9.82113 -9.62634 -9.48095 -9.11567 -8.67960 -7.96863 -7.55741 -6.29753 -4.38425 1.25028 1.49837 2.26908 2.63382 3.22621 3.22800 3.26336 3.29202 3.35880 3.56433 3.85015 4.27781 4.29358 4.40828 4.48429 4.83074 4.99837 5.03651 5.12305 5.15469 5.30391 5.34309 5.39058 5.44701 5.54842 5.57738 5.63691 5.96643 5.99321 6.06081 6.09107 6.15419 6.18401 6.30078 6.42342 6.52918 6.82834 6.96670 7.03249 7.39454 7.47958 7.55351 7.65504 7.81654 7.84463 8.09294 8.57084 8.69819 9.29080 10.77660 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.003113 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.033123 B = 8993.592408 C =10870.360888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 C -0.121 4.121 4 C -0.193 4.193 5 C 0.146 3.854 6 N -0.696 5.696 7 C 0.514 3.486 8 O -0.509 6.509 9 C 0.513 3.487 10 O -0.498 6.498 11 N -0.607 5.607 12 C 0.293 3.707 13 C -0.287 4.287 14 C 0.049 3.951 15 C -0.062 4.062 16 N -0.277 5.277 17 N -0.341 5.341 18 C 0.255 3.745 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.429 0.571 38 H 0.163 0.837 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 21.910 2.949 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 C -0.177 4.177 4 C -0.211 4.211 5 C 0.023 3.977 6 N -0.351 5.351 7 C 0.294 3.706 8 O -0.383 6.383 9 C 0.293 3.707 10 O -0.372 6.372 11 N -0.255 5.255 12 C 0.071 3.929 13 C -0.319 4.319 14 C -0.116 4.116 15 C -0.121 4.121 16 N -0.103 5.103 17 N -0.126 5.126 18 C 0.138 3.862 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.250 0.750 37 H 0.267 0.733 38 H 0.180 0.820 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.837 20.614 2.775 21.355 hybrid contribution 0.411 -0.005 1.244 1.310 sum 5.248 20.609 4.019 21.643 Atomic orbital electron populations 1.20975 0.92056 1.02796 1.02707 1.21760 0.96086 0.95070 0.97327 1.20914 0.99781 0.94569 1.02463 1.22626 1.00111 0.92844 1.05567 1.20483 0.97897 0.89898 0.89375 1.45663 1.38252 1.17729 1.33425 1.19810 0.83599 0.82386 0.84789 1.90835 1.27739 1.68907 1.50819 1.19888 0.83709 0.81759 0.85327 1.90693 1.27395 1.68748 1.50337 1.42302 1.36533 1.16931 1.29721 1.17976 0.96656 0.87282 0.90964 1.21279 1.04673 1.04650 1.01321 1.22020 0.98133 0.92902 0.98496 1.20029 0.95148 1.02530 0.94396 1.77365 1.07730 1.21986 1.03206 1.49589 1.28795 1.11619 1.22647 1.19690 0.81823 0.90738 0.93981 1.21269 0.95185 1.23340 1.18285 0.91728 1.24932 0.94698 0.96626 0.97369 1.69906 1.03165 1.38516 1.41048 0.86393 0.78654 0.80321 0.81232 1.19917 1.20869 1.19876 0.90971 0.91716 0.90943 0.90902 0.91696 0.91616 0.86321 0.90048 0.90166 0.74955 0.73260 0.82002 0.91307 0.91083 0.91420 0.92353 0.93616 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 8.55 36.01 0.31 -0.48 16 2 C -0.10 -0.66 6.05 -101.07 -0.61 -1.27 16 3 C -0.12 -0.61 9.98 36.01 0.36 -0.25 16 4 C -0.19 -1.38 9.22 -36.03 -0.33 -1.71 16 5 C 0.15 1.33 5.86 -5.19 -0.03 1.30 16 6 N -0.70 -7.52 5.54 -61.96 -0.34 -7.87 16 7 C 0.51 7.42 7.88 -11.65 -0.09 7.32 16 8 O -0.51 -8.61 16.48 5.48 0.09 -8.52 16 9 C 0.51 8.41 7.85 -11.65 -0.09 8.32 16 10 O -0.50 -8.38 13.60 5.47 0.07 -8.30 16 11 N -0.61 -11.39 5.40 -11.80 -0.06 -11.46 16 12 C 0.29 6.26 7.68 -152.86 -1.17 5.09 16 13 C -0.29 -5.75 9.58 -39.76 -0.38 -6.13 16 14 C 0.05 0.97 7.20 -82.47 -0.59 0.38 16 15 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 16 N -0.28 -6.42 12.56 33.64 0.42 -6.00 16 17 N -0.34 -8.08 3.62 -61.47 -0.22 -8.31 16 18 C 0.26 6.53 6.02 -5.20 -0.03 6.50 16 19 C -0.54 -14.94 9.39 -34.44 -0.32 -15.26 16 20 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 21 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 23 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 28 H 0.06 0.33 7.92 -51.93 -0.41 -0.09 16 29 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.28 8.01 -51.93 -0.42 -0.14 16 32 H 0.06 0.30 8.04 -51.93 -0.42 -0.12 16 33 H 0.12 0.75 8.02 -52.48 -0.42 0.33 16 34 H 0.08 0.76 5.88 -51.93 -0.31 0.45 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.41 3.88 7.93 -40.82 -0.32 3.55 16 37 H 0.43 8.11 7.45 -40.82 -0.30 7.80 16 38 H 0.16 3.04 5.83 -52.49 -0.31 2.73 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -31.74 379.58 -7.50 -39.25 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.18 Total: 8.43 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -2.71 Total: 5.03 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.53 Total: -57.87 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.16 Total: -16.82 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.74 -7.50 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517210907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.128 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds