Wall clock time and date at job start Tue Mar 31 2020 13:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 120.00118 * 2 1 4 4 C 1.31000 * 119.99975 * 179.97438 * 2 1 3 5 5 C 1.50701 * 119.99957 * 5.46158 * 4 2 1 6 6 N 1.46501 * 109.46727 * 125.44833 * 5 4 2 7 7 C 1.34781 * 119.99924 * 180.02562 * 6 5 4 8 8 O 1.21367 * 119.99949 * 0.02562 * 7 6 5 9 9 C 1.49307 * 119.99978 * 179.97438 * 7 6 5 10 10 O 1.21384 * 120.00300 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99665 * 179.97438 * 9 7 6 12 12 C 1.39199 * 119.99975 * 179.97438 * 11 9 7 13 13 C 1.36218 * 126.27002 * 0.18163 * 12 11 9 14 14 C 1.39696 * 107.85655 * 180.23541 * 13 12 11 15 15 C 1.50699 * 125.76891 * 179.73411 * 14 13 12 16 16 N 1.30845 * 108.45892 * 359.75650 * 14 13 12 17 17 N 1.35850 * 126.27250 * 179.97438 * 12 11 9 18 18 C 1.46500 * 126.10014 * 0.03308 * 17 12 11 19 19 C 1.50696 * 109.47183 * 269.71241 * 18 17 12 20 20 H 1.08001 * 119.99860 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00214 * 179.72606 * 19 18 17 22 22 N 1.31519 * 120.00118 * 0.27187 * 21 19 18 23 23 Si 1.86804 * 120.00289 * 180.27364 * 21 19 18 24 24 H 1.48494 * 109.46887 * 59.99590 * 23 21 19 25 25 H 1.48501 * 109.47334 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46704 * 299.99693 * 23 21 19 27 27 H 1.08991 * 109.47146 * 234.91933 * 1 2 3 28 28 H 1.09000 * 109.46642 * 354.92294 * 1 2 3 29 29 H 1.09002 * 109.46777 * 114.91773 * 1 2 3 30 30 H 1.09002 * 109.46575 * 269.99202 * 3 2 1 31 31 H 1.08997 * 109.47280 * 29.99762 * 3 2 1 32 32 H 1.09006 * 109.46873 * 149.99668 * 3 2 1 33 33 H 1.08006 * 120.00167 * 185.46721 * 4 2 1 34 34 H 1.08998 * 109.47370 * 5.44995 * 5 4 2 35 35 H 1.08998 * 109.47206 * 245.44571 * 5 4 2 36 36 H 0.97003 * 120.00445 * 359.97438 * 6 5 4 37 37 H 0.97000 * 120.00489 * 0.02562 * 11 9 7 38 38 H 1.07992 * 126.07248 * 359.97438 * 13 12 11 39 39 H 1.08994 * 109.47428 * 270.00465 * 15 14 13 40 40 H 1.09007 * 109.46919 * 30.00212 * 15 14 13 41 41 H 1.09005 * 109.46693 * 149.99953 * 15 14 13 42 42 H 1.09001 * 109.47187 * 149.71163 * 18 17 12 43 43 H 1.09007 * 109.47117 * 29.70992 * 18 17 12 44 44 H 0.97003 * 120.00017 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4136 -2.4367 -0.1231 6 7 1.9561 -3.2070 -1.2450 7 6 1.4377 -4.4139 -1.5470 8 8 0.5212 -4.8623 -0.8898 9 6 1.9901 -5.1987 -2.6908 10 8 2.9065 -4.7500 -3.3484 11 7 1.4721 -6.4058 -2.9923 12 6 1.9867 -7.1373 -4.0590 13 6 3.0089 -6.7597 -4.8764 14 6 3.2044 -7.7756 -5.8151 15 6 4.2327 -7.7712 -6.9166 16 7 2.3433 -8.7315 -5.5764 17 7 1.5643 -8.3602 -4.4730 18 6 0.4824 -9.1474 -3.8762 19 6 1.0454 -10.0410 -2.8012 20 1 2.1033 -10.0245 -2.5846 21 6 0.2092 -10.8758 -2.0908 22 7 -1.0791 -10.8963 -2.3549 23 14 0.9059 -11.9779 -0.7531 24 1 1.5501 -11.1418 0.2914 25 1 -0.1916 -12.7715 -0.1440 26 1 1.9129 -12.8962 -1.3430 27 1 -0.3633 -0.5906 0.8409 28 1 -0.3632 1.0237 0.0909 29 1 -0.3633 -0.4330 -0.9320 30 1 2.4423 1.6196 -1.0277 31 1 1.6715 2.0648 0.5138 32 1 3.2130 1.1747 0.5139 33 1 3.2384 -1.1366 0.0896 34 1 0.3573 -2.2334 -0.2990 35 1 1.5251 -3.0087 0.7980 36 1 2.6878 -2.8481 -1.7710 37 1 0.7400 -6.7645 -2.4667 38 1 3.5661 -5.8368 -4.8130 39 1 3.8050 -7.3189 -7.8113 40 1 5.1027 -7.1961 -6.5992 41 1 4.5346 -8.7954 -7.1360 42 1 0.0101 -9.7580 -4.6458 43 1 -0.2575 -8.4761 -3.4401 44 1 -1.6674 -11.4834 -1.8549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517210907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:39 Heat of formation + Delta-G solvation = -2.992642 kcal Electronic energy + Delta-G solvation = -26112.245582 eV Core-core repulsion = 22258.918359 eV Total energy + Delta-G solvation = -3853.327224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63792 -41.52306 -39.80213 -38.06075 -36.56270 -35.80906 -35.17962 -33.85593 -30.94095 -30.43387 -29.90025 -28.64879 -27.83465 -26.63902 -24.88595 -24.33266 -22.35422 -21.46050 -21.08336 -19.63987 -18.91293 -18.58425 -18.22788 -17.78712 -17.37354 -16.86312 -16.61272 -16.28623 -16.04948 -15.72063 -15.42788 -14.99585 -14.86899 -14.64305 -14.47916 -14.43582 -14.08223 -13.65136 -13.55236 -13.44366 -13.23343 -13.13865 -12.99482 -12.84232 -12.76905 -12.70745 -12.48027 -12.30489 -12.08612 -11.87338 -11.75286 -11.42630 -10.91871 -10.78124 -10.46957 -9.73514 -9.69274 -9.19034 -8.38532 -6.56247 -0.06219 0.67284 1.07147 1.18563 1.35509 1.36869 1.45834 1.81487 1.85638 2.10012 2.30575 2.48767 2.92128 3.20929 3.72224 3.78641 4.00103 4.13173 4.26236 4.39114 4.49149 4.55378 4.66044 4.69019 4.69786 4.80793 4.81616 4.89763 4.91639 4.93088 4.96700 5.00743 5.13056 5.16537 5.19388 5.21400 5.47834 5.66963 5.73582 5.78394 5.88871 5.92887 5.96887 6.17715 6.45252 6.58458 6.73764 6.94930 7.15526 8.68182 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.003113 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.033123 B = 8993.592408 C =10870.360888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.202 4.202 5 C 0.144 3.856 6 N -0.674 5.674 7 C 0.520 3.480 8 O -0.538 6.538 9 C 0.517 3.483 10 O -0.498 6.498 11 N -0.615 5.615 12 C 0.287 3.713 13 C -0.291 4.291 14 C 0.059 3.941 15 C -0.061 4.061 16 N -0.322 5.322 17 N -0.367 5.367 18 C 0.272 3.728 19 C -0.558 4.558 20 H 0.049 0.951 21 C 0.025 3.975 22 N -0.915 5.915 23 Si 0.970 3.030 24 H -0.268 1.268 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.423 0.577 37 H 0.425 0.575 38 H 0.178 0.822 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.042 0.958 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 23.692 3.491 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.178 4.178 4 C -0.220 4.220 5 C 0.022 3.978 6 N -0.327 5.327 7 C 0.299 3.701 8 O -0.415 6.415 9 C 0.298 3.702 10 O -0.372 6.372 11 N -0.263 5.263 12 C 0.066 3.934 13 C -0.322 4.322 14 C -0.106 4.106 15 C -0.119 4.119 16 N -0.147 5.147 17 N -0.153 5.153 18 C 0.153 3.847 19 C -0.596 4.596 20 H 0.068 0.932 21 C -0.177 4.177 22 N -0.552 5.552 23 Si 0.794 3.206 24 H -0.193 1.193 25 H -0.196 1.196 26 H -0.198 1.198 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.148 0.852 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.261 0.739 37 H 0.263 0.737 38 H 0.196 0.804 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.457 22.459 3.311 23.603 hybrid contribution -0.040 -0.387 1.030 1.101 sum 6.417 22.073 4.341 23.393 Atomic orbital electron populations 1.21030 0.92019 1.03585 1.02366 1.22000 0.96347 0.95620 0.95696 1.20960 0.99999 0.93803 1.03026 1.22546 1.00527 0.91826 1.07144 1.20617 0.98200 0.90609 0.88335 1.45677 1.37511 1.16235 1.33315 1.19449 0.83473 0.83114 0.84030 1.90831 1.29180 1.69789 1.51667 1.20292 0.83292 0.81015 0.85578 1.90666 1.27367 1.68586 1.50534 1.42451 1.36802 1.17618 1.29399 1.18383 0.96798 0.86678 0.91560 1.21554 1.04348 1.05230 1.01084 1.22932 0.97412 0.91440 0.98801 1.20257 0.94558 1.03696 0.93391 1.77326 1.09308 1.24051 1.03982 1.49358 1.29458 1.12597 1.23844 1.19223 0.82436 0.90339 0.92703 1.21382 0.94542 1.24385 1.19287 0.93228 1.25735 0.94956 0.97692 0.99314 1.69989 1.04163 1.39136 1.41951 0.85424 0.78217 0.78489 0.78506 1.19309 1.19568 1.19788 0.91058 0.90471 0.91513 0.90339 0.90825 0.91016 0.85208 0.90129 0.90508 0.73864 0.73667 0.80448 0.89036 0.88406 0.90918 0.95047 0.94001 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.55 71.24 0.61 -0.83 16 2 C -0.10 -1.06 6.05 -16.49 -0.10 -1.16 16 3 C -0.12 -0.92 9.98 71.24 0.71 -0.21 16 4 C -0.20 -2.52 9.22 25.65 0.24 -2.28 16 5 C 0.14 2.46 5.86 85.63 0.50 2.96 16 6 N -0.67 -13.72 5.54 -468.28 -2.59 -16.31 16 7 C 0.52 14.77 7.88 87.22 0.69 15.46 16 8 O -0.54 -18.31 16.48 -3.30 -0.05 -18.36 16 9 C 0.52 16.76 7.85 87.23 0.68 17.45 16 10 O -0.50 -16.10 13.60 -3.35 -0.05 -16.15 16 11 N -0.61 -23.52 5.40 -309.59 -1.67 -25.19 16 12 C 0.29 12.44 7.68 131.25 1.01 13.45 16 13 C -0.29 -11.40 9.58 22.15 0.21 -11.18 16 14 C 0.06 2.30 7.20 43.06 0.31 2.61 16 15 C -0.06 -1.59 10.44 71.24 0.74 -0.84 16 16 N -0.32 -15.15 12.56 -47.49 -0.60 -15.75 16 17 N -0.37 -17.98 3.62 -348.39 -1.26 -19.24 16 18 C 0.27 14.58 6.02 85.63 0.52 15.10 16 19 C -0.56 -31.68 9.39 25.60 0.24 -31.44 16 20 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 21 C 0.02 1.37 5.46 84.65 0.46 1.83 16 22 N -0.91 -52.25 13.29 21.45 0.28 -51.96 16 23 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H 0.07 0.78 7.84 -2.39 -0.02 0.77 16 28 H 0.08 0.63 7.92 -2.39 -0.02 0.61 16 29 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.45 8.01 -2.39 -0.02 0.43 16 32 H 0.07 0.48 8.04 -2.38 -0.02 0.46 16 33 H 0.13 1.34 8.02 -2.91 -0.02 1.31 16 34 H 0.08 1.43 5.88 -2.39 -0.01 1.42 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.42 7.14 7.93 -92.71 -0.74 6.41 16 37 H 0.43 16.76 7.45 -92.71 -0.69 16.07 16 38 H 0.18 6.32 5.83 -2.91 -0.02 6.31 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 40 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.03 1.81 8.14 -2.39 -0.02 1.80 16 43 H 0.04 2.23 7.51 -2.38 -0.02 2.21 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -69.11 379.58 2.53 -66.58 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.38 Total: 29.64 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 6.82 Total: 20.92 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -5.84 Total: -128.45 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.10 Total: -34.51 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.11 2.53 -66.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517210907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.591 kcal (2) G-P(sol) polarization free energy of solvation -69.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds