Wall clock time and date at job start Tue Mar 31 2020 13:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.46827 * 180.02562 * 8 6 5 10 10 C 1.45752 * 117.94843 * 269.73706 * 9 8 6 11 11 C 1.53106 * 110.38764 * 160.74789 * 10 9 8 12 12 C 1.53341 * 108.52526 * 51.11521 * 11 10 9 13 13 C 1.53064 * 108.42677 * 292.31231 * 12 11 10 14 14 C 1.33350 * 117.94490 * 90.01028 * 9 8 6 15 15 O 1.21281 * 118.24662 * 2.23520 * 14 9 8 16 16 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 17 17 C 1.46491 * 126.04623 * 179.87688 * 16 4 3 18 18 C 1.50702 * 109.46957 * 269.71277 * 17 16 4 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 28 28 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 29 29 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 30 30 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 31 31 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 32 32 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 33 33 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 34 34 H 1.09002 * 109.30559 * 281.24591 * 10 9 8 35 35 H 1.09005 * 109.29955 * 40.61961 * 10 9 8 36 36 H 1.09000 * 109.80335 * 291.32892 * 11 10 9 37 37 H 1.08999 * 109.67800 * 170.83499 * 11 10 9 38 38 H 1.09003 * 109.67116 * 172.57731 * 12 11 10 39 39 H 1.09001 * 109.70185 * 52.06583 * 12 11 10 40 40 H 1.09002 * 109.40073 * 288.76973 * 13 12 11 41 41 H 1.09004 * 109.32819 * 168.98940 * 13 12 11 42 42 H 1.09004 * 109.47166 * 149.71543 * 17 16 4 43 43 H 1.08994 * 109.47507 * 29.71250 * 17 16 4 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 7 5.4271 5.1554 0.0305 10 6 5.2462 5.8179 -1.2550 11 6 4.3844 7.0728 -1.0918 12 6 4.9715 7.9230 0.0413 13 6 4.7804 7.1700 1.3601 14 6 5.2470 5.7504 1.2103 15 8 5.4724 5.1111 2.2159 16 7 3.6093 -0.6405 0.0013 17 6 4.7870 -1.5116 0.0026 18 6 5.1921 -1.8109 -1.4178 19 1 4.6288 -1.3935 -2.2393 20 6 6.2856 -2.6124 -1.6685 21 7 6.9718 -3.1203 -0.6681 22 14 6.7923 -2.9770 -3.4290 23 1 5.8641 -2.2912 -4.3635 24 1 8.1755 -2.4872 -3.6576 25 1 6.7406 -4.4422 -3.6658 26 7 2.2731 -1.0608 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5136 30 1 1.9901 2.1596 -0.0009 31 1 5.6359 1.1294 0.0155 32 1 6.4297 3.5415 0.9182 33 1 6.4372 3.5481 -0.8617 34 1 6.2204 6.0954 -1.6577 35 1 4.7554 5.1335 -1.9471 36 1 3.3617 6.7888 -0.8437 37 1 4.3902 7.6453 -2.0193 38 1 4.4537 8.8811 0.0873 39 1 6.0342 8.0885 -0.1362 40 1 3.7248 7.1774 1.6316 41 1 5.3591 7.6606 2.1428 42 1 4.5494 -2.4431 0.5166 43 1 5.6079 -1.0120 0.5169 44 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519108140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:08 Heat of formation + Delta-G solvation = 4.729458 kcal Electronic energy + Delta-G solvation = -27186.551747 eV Core-core repulsion = 23333.559378 eV Total energy + Delta-G solvation = -3852.992368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08543 -40.50761 -38.84641 -36.63299 -34.72847 -34.26904 -33.74514 -32.06387 -29.99920 -29.40009 -28.79991 -27.31208 -26.02396 -24.66978 -23.04370 -22.66435 -21.41565 -19.75244 -19.34472 -18.78534 -17.17228 -16.91453 -16.76873 -16.72450 -16.21477 -15.65726 -15.15315 -14.86098 -14.48824 -14.41760 -14.14678 -14.04298 -13.82790 -13.58091 -13.35219 -12.83560 -12.78753 -12.50129 -12.37796 -12.04261 -11.89511 -11.76963 -11.56758 -11.56641 -11.28901 -11.26848 -11.06335 -10.91948 -10.37516 -10.33599 -10.05328 -9.83511 -9.79382 -9.56789 -8.87927 -8.73409 -7.90026 -7.41937 -6.33949 -4.42447 2.25942 2.37281 2.68034 3.04083 3.12786 3.13714 3.22887 3.28769 3.62056 3.83620 4.23534 4.30525 4.41681 4.45087 4.51039 4.69780 4.95136 4.99320 5.05704 5.14906 5.20490 5.31656 5.38017 5.41636 5.51582 5.55989 5.62376 5.64722 5.88568 6.03633 6.04372 6.17396 6.20286 6.29794 6.44535 6.68229 6.85128 7.05315 7.24175 7.52912 7.58704 7.63572 7.79621 7.91491 8.01808 8.31442 8.62747 8.71980 9.25023 10.73217 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.003638 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.411399 B = 7694.083425 C = 8968.834765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.303 3.697 5 N -0.638 5.638 6 C 0.505 3.495 7 O -0.508 6.508 8 C 0.092 3.908 9 N -0.584 5.584 10 C 0.114 3.886 11 C -0.136 4.136 12 C -0.123 4.123 13 C -0.131 4.131 14 C 0.522 3.478 15 O -0.551 6.551 16 N -0.344 5.344 17 C 0.256 3.744 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.066 3.934 21 N -0.889 5.889 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.280 1.280 26 N -0.286 5.286 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.417 0.583 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 21.173 -1.011 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.081 3.919 5 N -0.286 5.286 6 C 0.290 3.710 7 O -0.382 6.382 8 C -0.035 4.035 9 N -0.317 5.317 10 C -0.008 4.008 11 C -0.173 4.173 12 C -0.161 4.161 13 C -0.171 4.171 14 C 0.311 3.689 15 O -0.428 6.428 16 N -0.130 5.130 17 C 0.138 3.862 18 C -0.578 4.578 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 N -0.111 5.111 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.177 0.823 31 H 0.253 0.747 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.949 19.809 -0.434 19.909 hybrid contribution 0.984 0.132 -1.035 1.434 sum -0.965 19.940 -1.469 20.018 Atomic orbital electron populations 1.20011 0.87635 1.02373 1.02021 1.22022 0.96486 0.91062 1.01906 1.21236 0.89113 1.00328 1.22053 1.17930 0.88028 0.83324 1.02641 1.42761 1.08319 1.05553 1.71993 1.21084 0.92075 0.81558 0.76288 1.90619 1.26609 1.73695 1.47252 1.21287 0.94531 0.81133 1.06560 1.46876 1.68143 1.09983 1.06667 1.21496 1.00022 0.94934 0.84390 1.21901 1.00235 0.95442 0.99766 1.21670 1.01916 0.98880 0.93639 1.21633 1.04088 0.91630 0.99745 1.20175 0.76608 0.89623 0.82468 1.90737 1.50879 1.65311 1.35921 1.49341 1.06514 1.02179 1.54938 1.19627 0.77857 0.89785 0.98927 1.21378 1.13048 1.32011 0.91345 0.91665 1.24947 0.95724 0.94916 0.98172 1.69932 1.19050 1.32739 1.30973 0.86300 0.78302 0.78466 0.83620 1.19584 1.20645 1.20534 1.77347 0.86162 1.21806 1.25823 0.91398 0.91216 0.91507 0.82333 0.74691 0.85969 0.86773 0.91329 0.90296 0.90384 0.89715 0.90518 0.91096 0.88062 0.88244 0.92564 0.93777 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.00 0.38 -0.57 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.44 16 3 C -0.30 -6.26 9.58 -39.78 -0.38 -6.64 16 4 C 0.30 6.58 7.66 -153.16 -1.17 5.40 16 5 N -0.64 -11.40 5.41 -11.46 -0.06 -11.46 16 6 C 0.51 8.16 7.85 -10.98 -0.09 8.07 16 7 O -0.51 -9.48 13.55 5.55 0.08 -9.40 16 8 C 0.09 1.09 5.70 -5.19 -0.03 1.06 16 9 N -0.58 -6.57 2.30 -176.22 -0.41 -6.98 16 10 C 0.11 0.92 6.32 -4.39 -0.03 0.89 16 11 C -0.14 -0.88 6.03 -26.50 -0.16 -1.04 16 12 C -0.12 -0.72 6.03 -26.52 -0.16 -0.88 16 13 C -0.13 -1.13 6.03 -28.10 -0.17 -1.30 16 14 C 0.52 6.67 7.44 -11.87 -0.09 6.59 16 15 O -0.55 -9.36 16.18 5.56 0.09 -9.27 16 16 N -0.34 -8.25 3.60 -61.58 -0.22 -8.47 16 17 C 0.26 6.47 6.01 -5.20 -0.03 6.44 16 18 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 19 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 22 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 N -0.29 -6.83 12.56 33.65 0.42 -6.41 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.16 3.29 5.83 -52.49 -0.31 2.99 16 31 H 0.42 6.76 7.96 -40.82 -0.32 6.43 16 32 H 0.12 1.48 7.13 -51.93 -0.37 1.11 16 33 H 0.11 0.98 8.01 -51.93 -0.42 0.56 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.04 1.08 7.49 -51.93 -0.39 0.69 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -35.00 369.09 -8.19 -43.19 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.42 Total: 6.02 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.95 Total: 5.30 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.47 Total: -56.89 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.17 Total: -18.67 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.00 -8.19 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519108140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.920 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds