Wall clock time and date at job start Tue Mar 31 2020 13:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.46827 * 180.02562 * 8 6 5 10 10 C 1.45752 * 117.94843 * 269.73706 * 9 8 6 11 11 C 1.53106 * 110.38764 * 160.74789 * 10 9 8 12 12 C 1.53341 * 108.52526 * 51.11521 * 11 10 9 13 13 C 1.53064 * 108.42677 * 292.31231 * 12 11 10 14 14 C 1.33350 * 117.94490 * 90.01028 * 9 8 6 15 15 O 1.21281 * 118.24662 * 2.23520 * 14 9 8 16 16 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 17 17 C 1.46491 * 126.04623 * 179.87688 * 16 4 3 18 18 C 1.50702 * 109.46957 * 269.71277 * 17 16 4 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 28 28 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 29 29 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 30 30 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 31 31 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 32 32 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 33 33 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 34 34 H 1.09002 * 109.30559 * 281.24591 * 10 9 8 35 35 H 1.09005 * 109.29955 * 40.61961 * 10 9 8 36 36 H 1.09000 * 109.80335 * 291.32892 * 11 10 9 37 37 H 1.08999 * 109.67800 * 170.83499 * 11 10 9 38 38 H 1.09003 * 109.67116 * 172.57731 * 12 11 10 39 39 H 1.09001 * 109.70185 * 52.06583 * 12 11 10 40 40 H 1.09002 * 109.40073 * 288.76973 * 13 12 11 41 41 H 1.09004 * 109.32819 * 168.98940 * 13 12 11 42 42 H 1.09004 * 109.47166 * 149.71543 * 17 16 4 43 43 H 1.08994 * 109.47507 * 29.71250 * 17 16 4 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 7 5.4271 5.1554 0.0305 10 6 5.2462 5.8179 -1.2550 11 6 4.3844 7.0728 -1.0918 12 6 4.9715 7.9230 0.0413 13 6 4.7804 7.1700 1.3601 14 6 5.2470 5.7504 1.2103 15 8 5.4724 5.1111 2.2159 16 7 3.6093 -0.6405 0.0013 17 6 4.7870 -1.5116 0.0026 18 6 5.1921 -1.8109 -1.4178 19 1 4.6288 -1.3935 -2.2393 20 6 6.2856 -2.6124 -1.6685 21 7 6.9718 -3.1203 -0.6681 22 14 6.7923 -2.9770 -3.4290 23 1 5.8641 -2.2912 -4.3635 24 1 8.1755 -2.4872 -3.6576 25 1 6.7406 -4.4422 -3.6658 26 7 2.2731 -1.0608 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5136 30 1 1.9901 2.1596 -0.0009 31 1 5.6359 1.1294 0.0155 32 1 6.4297 3.5415 0.9182 33 1 6.4372 3.5481 -0.8617 34 1 6.2204 6.0954 -1.6577 35 1 4.7554 5.1335 -1.9471 36 1 3.3617 6.7888 -0.8437 37 1 4.3902 7.6453 -2.0193 38 1 4.4537 8.8811 0.0873 39 1 6.0342 8.0885 -0.1362 40 1 3.7248 7.1774 1.6316 41 1 5.3591 7.6606 2.1428 42 1 4.5494 -2.4431 0.5166 43 1 5.6079 -1.0120 0.5169 44 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519108140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:07 Heat of formation + Delta-G solvation = -18.176482 kcal Electronic energy + Delta-G solvation = -27187.545023 eV Core-core repulsion = 23333.559378 eV Total energy + Delta-G solvation = -3853.985644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.51381 -41.69829 -40.20404 -37.50599 -36.29579 -35.61632 -35.06640 -33.85899 -31.05275 -30.63748 -30.26040 -28.57673 -27.82709 -25.37298 -24.80221 -23.71965 -22.62868 -21.31506 -20.84842 -19.57158 -18.91267 -18.52663 -18.05845 -17.63268 -17.54706 -16.76589 -16.63413 -16.42428 -15.93633 -15.62738 -15.31706 -15.11961 -14.77379 -14.53436 -14.45458 -14.30984 -14.14897 -14.07638 -13.67697 -13.41571 -13.24478 -13.12953 -12.89907 -12.72007 -12.70300 -12.32495 -12.22571 -11.94053 -11.84199 -11.80649 -11.69566 -11.53133 -11.08300 -10.77434 -10.76435 -9.85557 -9.66485 -9.10485 -8.37235 -6.55261 0.74589 1.17268 1.35435 1.38407 1.49760 1.58027 1.64754 1.89929 2.01557 2.26307 2.36623 2.93138 3.45102 3.58241 3.80068 3.85159 3.92572 3.95859 4.13811 4.20575 4.29988 4.52763 4.57563 4.59106 4.61852 4.68905 4.81341 4.85366 4.86041 4.87391 4.92223 4.96152 5.07547 5.15144 5.17385 5.19193 5.28656 5.40766 5.50041 5.75094 5.92754 6.11440 6.24056 6.37694 6.55513 6.89319 6.99753 7.07599 7.17016 8.69709 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.003638 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.411399 B = 7694.083425 C = 8968.834765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.308 4.308 4 C 0.300 3.700 5 N -0.638 5.638 6 C 0.504 3.496 7 O -0.534 6.534 8 C 0.096 3.904 9 N -0.583 5.583 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.114 4.114 13 C -0.129 4.129 14 C 0.511 3.489 15 O -0.604 6.604 16 N -0.366 5.366 17 C 0.271 3.729 18 C -0.555 4.555 19 H 0.048 0.952 20 C 0.026 3.974 21 N -0.915 5.915 22 Si 0.973 3.027 23 H -0.275 1.275 24 H -0.263 1.263 25 H -0.277 1.277 26 N -0.331 5.331 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.422 0.578 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.025 0.975 43 H 0.047 0.953 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 23.361 -2.810 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 C -0.340 4.340 4 C 0.078 3.922 5 N -0.287 5.287 6 C 0.291 3.709 7 O -0.408 6.408 8 C -0.031 4.031 9 N -0.313 5.313 10 C -0.016 4.016 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.169 4.169 14 C 0.301 3.699 15 O -0.486 6.486 16 N -0.152 5.152 17 C 0.153 3.847 18 C -0.593 4.593 19 H 0.067 0.933 20 C -0.175 4.175 21 N -0.553 5.553 22 Si 0.797 3.203 23 H -0.199 1.199 24 H -0.188 1.188 25 H -0.202 1.202 26 N -0.156 5.156 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.182 0.818 31 H 0.260 0.740 32 H 0.138 0.862 33 H 0.171 0.829 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.489 22.036 -2.259 22.201 hybrid contribution 0.777 -0.494 -0.443 1.021 sum -0.712 21.542 -2.701 21.722 Atomic orbital electron populations 1.20220 0.83862 1.03955 1.03808 1.22891 0.98765 0.90012 0.99014 1.21429 0.89159 1.00653 1.22794 1.18344 0.89612 0.82874 1.01410 1.42978 1.07634 1.05950 1.72106 1.22005 0.93203 0.80984 0.74696 1.90589 1.28103 1.73889 1.48256 1.21401 0.92502 0.80929 1.08276 1.47102 1.67080 1.09518 1.07629 1.21818 1.01977 0.95240 0.82567 1.21924 0.98760 0.95080 1.01339 1.21667 1.02992 0.99094 0.91410 1.21695 1.03834 0.89389 1.01958 1.21017 0.75682 0.91067 0.82092 1.90707 1.53304 1.66856 1.37714 1.49170 1.06329 1.02840 1.56853 1.19241 0.78554 0.88897 0.98037 1.21416 1.13547 1.32891 0.91420 0.93321 1.25729 0.95331 0.94230 1.02250 1.70011 1.19398 1.32904 1.32963 0.85283 0.78472 0.78148 0.78398 1.19943 1.18778 1.20246 1.77296 0.86448 1.23600 1.28304 0.89373 0.88802 0.90715 0.81840 0.73989 0.86167 0.82859 0.88330 0.91079 0.92310 0.86977 0.88306 0.89845 0.88179 0.87369 0.95651 0.93530 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.44 71.23 0.74 -1.01 16 2 C 0.06 2.43 7.21 43.07 0.31 2.74 16 3 C -0.31 -13.21 9.58 22.14 0.21 -12.99 16 4 C 0.30 13.34 7.66 131.32 1.01 14.35 16 5 N -0.64 -23.16 5.41 -308.55 -1.67 -24.83 16 6 C 0.50 16.29 7.85 87.66 0.69 16.98 16 7 O -0.53 -20.00 13.55 -3.07 -0.04 -20.04 16 8 C 0.10 2.19 5.70 85.64 0.49 2.68 16 9 N -0.58 -12.35 2.30 -830.63 -1.91 -14.26 16 10 C 0.11 1.42 6.32 86.56 0.55 1.97 16 11 C -0.13 -1.36 6.03 30.74 0.19 -1.18 16 12 C -0.11 -0.99 6.03 30.73 0.19 -0.80 16 13 C -0.13 -2.04 6.03 29.70 0.18 -1.86 16 14 C 0.51 12.79 7.44 87.71 0.65 13.44 16 15 O -0.60 -20.95 16.18 -3.03 -0.05 -21.00 16 16 N -0.37 -18.19 3.60 -348.73 -1.26 -19.45 16 17 C 0.27 14.31 6.01 85.64 0.51 14.82 16 18 C -0.55 -30.50 9.39 25.60 0.24 -30.26 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.03 1.39 5.46 84.66 0.46 1.85 16 21 N -0.91 -50.32 13.29 21.45 0.28 -50.04 16 22 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 N -0.33 -16.26 12.56 -47.45 -0.60 -16.85 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.16 6.81 5.83 -2.91 -0.02 6.80 16 31 H 0.42 14.00 7.96 -92.70 -0.74 13.26 16 32 H 0.12 2.88 7.13 -2.39 -0.02 2.86 16 33 H 0.15 2.26 8.01 -2.39 -0.02 2.24 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.10 8.10 -2.38 -0.02 1.08 16 36 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 37 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.08 0.56 8.13 -2.39 -0.02 0.54 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.05 2.38 7.49 -2.39 -0.02 2.36 16 44 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -78.53 369.09 3.49 -75.05 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.29 Total: 26.88 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 6.42 Total: 20.73 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.15 Total: -125.43 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.09 Total: -41.04 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -78.53 3.49 -75.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519108140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.869 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds