Wall clock time and date at job start Tue Mar 31 2020 13:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.47423 * 125.65109 * 359.97383 * 4 2 1 6 6 C 1.55123 * 104.72654 * 155.81318 * 5 4 2 7 7 C 1.55156 * 101.48498 * 37.29727 * 6 5 4 8 8 C 1.47025 * 125.65000 * 180.27553 * 4 2 1 9 9 H 1.09004 * 109.88256 * 300.44464 * 8 4 2 10 10 C 1.50701 * 109.88171 * 61.60560 * 8 4 2 11 11 O 1.21298 * 119.99723 * 18.55036 * 10 8 4 12 12 N 1.34772 * 120.00193 * 198.54734 * 10 8 4 13 13 C 1.39471 * 120.00000 * 180.02562 * 12 10 8 14 14 C 1.36109 * 126.21988 * 0.02562 * 13 12 10 15 15 C 1.39756 * 107.83364 * 180.02562 * 14 13 12 16 16 C 1.50691 * 125.84002 * 180.02562 * 15 14 13 17 17 N 1.30850 * 108.31874 * 0.02562 * 15 14 13 18 18 N 1.35268 * 126.21664 * 179.71565 * 13 12 10 19 19 C 1.46502 * 126.04296 * 359.97438 * 18 13 12 20 20 C 1.50694 * 109.46879 * 90.00175 * 19 18 13 21 21 H 1.08000 * 120.00361 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99710 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00214 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99786 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47203 * 90.00462 * 24 22 20 26 26 H 1.48505 * 109.46797 * 209.99979 * 24 22 20 27 27 H 1.48500 * 109.47363 * 330.00044 * 24 22 20 28 28 H 1.09000 * 109.46964 * 90.00343 * 1 2 3 29 29 H 1.09003 * 109.47060 * 210.00156 * 1 2 3 30 30 H 1.09001 * 109.46926 * 330.00454 * 1 2 3 31 31 H 1.09004 * 110.36802 * 274.74548 * 5 4 2 32 32 H 1.09004 * 110.36924 * 37.06499 * 5 4 2 33 33 H 1.09005 * 111.19378 * 279.19151 * 6 5 4 34 34 H 1.08999 * 110.93906 * 155.28614 * 6 5 4 35 35 H 1.09001 * 110.71954 * 205.97391 * 7 6 5 36 36 H 1.08993 * 110.72314 * 82.69667 * 7 6 5 37 37 H 0.96994 * 119.99963 * 359.97438 * 12 10 8 38 38 H 1.08008 * 126.08286 * 0.04221 * 14 13 12 39 39 H 1.09003 * 109.47583 * 89.99788 * 16 15 14 40 40 H 1.09003 * 109.47068 * 210.00234 * 16 15 14 41 41 H 1.09002 * 109.47351 * 329.99848 * 16 15 14 42 42 H 1.08999 * 109.46355 * 209.99794 * 19 18 13 43 43 H 1.08999 * 109.47255 * 329.99982 * 19 18 13 44 44 H 0.96995 * 120.00044 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.5731 -2.5103 0.0129 6 6 2.6571 -3.4369 -0.5975 7 6 3.9550 -2.8233 -0.0091 8 6 3.6440 -1.3119 0.0122 9 1 4.0677 -0.8338 -0.8710 10 6 4.2152 -0.6886 1.2597 11 8 3.4980 -0.4767 2.2148 12 7 5.5227 -0.3667 1.3143 13 6 6.0514 0.2097 2.4690 14 6 5.3665 0.5007 3.6087 15 6 6.2664 1.0659 4.5164 16 6 5.9359 1.5377 5.9088 17 7 7.4451 1.1154 3.9502 18 7 7.3392 0.5757 2.6620 19 6 8.4294 0.4364 1.6933 20 6 8.5126 1.6814 0.8484 21 1 7.8223 2.4949 1.0159 22 6 9.4702 1.7820 -0.1385 23 7 10.3106 0.7912 -0.3429 24 14 9.5729 3.3250 -1.1864 25 1 10.4900 4.3000 -0.5433 26 1 10.0892 2.9747 -2.5341 27 1 8.2215 3.9270 -1.3151 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.3400 -2.8158 1.0329 32 1 0.6735 -2.5229 -0.6026 33 1 2.6566 -3.3801 -1.6861 34 1 2.5242 -4.4654 -0.2620 35 1 4.8077 -3.0325 -0.6551 36 1 4.1340 -3.1945 0.9999 37 1 6.0962 -0.5365 0.5507 38 1 4.3147 0.3257 3.7810 39 1 6.0722 0.7166 6.6127 40 1 6.5962 2.3617 6.1796 41 1 4.9003 1.8762 5.9416 42 1 9.3708 0.2938 2.2239 43 1 8.2389 -0.4251 1.0533 44 1 10.9839 0.8618 -1.0374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523706995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:59 Heat of formation + Delta-G solvation = 11.160432 kcal Electronic energy + Delta-G solvation = -27576.204252 eV Core-core repulsion = 23723.490752 eV Total energy + Delta-G solvation = -3852.713500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06305 -40.27394 -38.61301 -37.25164 -34.66607 -33.71590 -32.30662 -31.98472 -30.51425 -29.29393 -28.92588 -27.84579 -25.98834 -24.32753 -22.88401 -22.19159 -21.40136 -19.94490 -19.56714 -18.76680 -17.29988 -17.24088 -16.81215 -16.46815 -15.77424 -15.36090 -15.12342 -14.77423 -14.60000 -14.23677 -13.99728 -13.76637 -13.52064 -13.29060 -12.84018 -12.79508 -12.73846 -12.57322 -12.46139 -12.24011 -12.08168 -11.87896 -11.68954 -11.58100 -11.51614 -11.24388 -11.03039 -10.85448 -10.32530 -10.27743 -9.96206 -9.90257 -9.76923 -9.50397 -8.79979 -8.68455 -7.86109 -7.37162 -6.30175 -4.38001 2.26960 2.45189 2.72787 3.04496 3.16989 3.20598 3.26961 3.33806 3.65933 3.84778 4.10899 4.18745 4.28834 4.53820 4.65233 4.76309 4.88898 5.03353 5.04738 5.09572 5.19351 5.24307 5.41654 5.41889 5.49158 5.53521 5.62734 5.68516 5.79207 5.98308 6.06275 6.20639 6.24740 6.33580 6.49086 6.72205 6.87210 7.07923 7.32352 7.57326 7.63440 7.68387 7.83568 7.96373 8.10010 8.37143 8.67124 8.76138 9.29674 10.76909 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010518 B = 0.004351 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.450397 B = 6433.973354 C = 7615.424652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.529 3.471 3 O -0.529 6.529 4 N -0.604 5.604 5 C 0.100 3.900 6 C -0.130 4.130 7 C -0.123 4.123 8 C 0.124 3.876 9 H 0.103 0.897 10 C 0.516 3.484 11 O -0.504 6.504 12 N -0.637 5.637 13 C 0.304 3.696 14 C -0.294 4.294 15 C 0.050 3.950 16 C -0.061 4.061 17 N -0.286 5.286 18 N -0.345 5.345 19 C 0.257 3.743 20 C -0.539 4.539 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.891 5.891 24 Si 0.905 3.095 25 H -0.276 1.276 26 H -0.283 1.283 27 H -0.271 1.271 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.415 0.585 38 H 0.159 0.841 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.228 -11.583 -1.536 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.318 3.682 3 O -0.404 6.404 4 N -0.340 5.340 5 C -0.023 4.023 6 C -0.168 4.168 7 C -0.162 4.162 8 C 0.016 3.984 9 H 0.121 0.879 10 C 0.301 3.699 11 O -0.376 6.376 12 N -0.284 5.284 13 C 0.082 3.918 14 C -0.326 4.326 15 C -0.115 4.115 16 C -0.120 4.120 17 N -0.111 5.111 18 N -0.131 5.131 19 C 0.139 3.861 20 C -0.577 4.577 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.529 5.529 24 Si 0.732 3.268 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.251 0.749 38 H 0.176 0.824 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.034 -10.527 -0.975 20.048 hybrid contribution -0.161 0.505 -1.292 1.397 sum -17.195 -10.021 -2.267 20.031 Atomic orbital electron populations 1.21849 0.91084 1.05017 1.04450 1.20531 0.90403 0.81940 0.75314 1.90801 1.70485 1.30527 1.48605 1.48304 1.04860 1.06451 1.74379 1.22433 0.96860 0.81514 1.01454 1.22825 0.93511 0.99256 1.01170 1.22666 0.99391 0.90663 1.03450 1.21424 0.82972 0.97681 0.96354 0.87873 1.20720 0.80892 0.78437 0.89864 1.90613 1.58382 1.51655 1.36988 1.42722 1.10292 1.59968 1.15398 1.17916 0.86401 0.99073 0.88411 1.21231 1.01606 1.16776 0.93018 1.22014 0.91557 1.00647 0.97276 1.20007 1.01505 1.00731 0.89766 1.77334 1.21415 1.20741 0.91632 1.49338 1.06085 1.45704 1.11928 1.19605 0.83724 0.97985 0.84739 1.21367 1.17548 1.02044 1.16787 0.91704 1.24918 0.94703 0.97055 0.96920 1.69915 1.18637 1.31478 1.32896 0.86369 0.78750 0.82571 0.79156 1.20189 1.20841 1.19610 0.88954 0.90171 0.88740 0.90807 0.89976 0.89945 0.89183 0.88480 0.89662 0.74857 0.82382 0.91423 0.91509 0.91217 0.92554 0.93863 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.67 36.01 0.35 -1.06 16 2 C 0.53 7.37 7.36 -10.98 -0.08 7.29 16 3 O -0.53 -10.31 16.91 5.55 0.09 -10.21 16 4 N -0.60 -7.11 2.75 -164.18 -0.45 -7.56 16 5 C 0.10 0.71 6.27 -2.41 -0.02 0.69 16 6 C -0.13 -0.74 7.10 -24.47 -0.17 -0.91 16 7 C -0.12 -1.04 6.46 -24.90 -0.16 -1.20 16 8 C 0.12 1.56 3.26 -68.10 -0.22 1.34 16 9 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 10 C 0.52 8.95 6.23 -10.99 -0.07 8.88 16 11 O -0.50 -10.07 13.26 5.54 0.07 -10.00 16 12 N -0.64 -12.02 5.41 -11.46 -0.06 -12.08 16 13 C 0.30 6.85 7.66 -153.15 -1.17 5.68 16 14 C -0.29 -6.50 9.58 -39.78 -0.38 -6.88 16 15 C 0.05 1.07 7.21 -82.45 -0.59 0.47 16 16 C -0.06 -0.98 10.44 36.00 0.38 -0.60 16 17 N -0.29 -6.97 12.56 33.65 0.42 -6.54 16 18 N -0.34 -8.46 3.60 -61.57 -0.22 -8.68 16 19 C 0.26 6.61 6.01 -5.20 -0.03 6.58 16 20 C -0.54 -15.00 9.39 -34.44 -0.32 -15.33 16 21 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 22 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 23 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 24 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.50 7.17 -51.93 -0.37 0.13 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.38 7.54 -51.93 -0.39 -0.02 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 37 H 0.42 7.17 7.97 -40.82 -0.33 6.84 16 38 H 0.16 3.46 5.83 -52.48 -0.31 3.15 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -37.03 370.28 -7.83 -44.87 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.39 Total: 5.55 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.60 Total: 6.68 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.42 Total: -58.84 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.03 -7.83 -44.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523706995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.029 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds