Wall clock time and date at job start Tue Mar 31 2020 13:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.47423 * 125.65109 * 359.97383 * 4 2 1 6 6 C 1.55123 * 104.72654 * 155.81318 * 5 4 2 7 7 C 1.55156 * 101.48498 * 37.29727 * 6 5 4 8 8 C 1.47025 * 125.65000 * 180.27553 * 4 2 1 9 9 H 1.09004 * 109.88256 * 300.44464 * 8 4 2 10 10 C 1.50701 * 109.88171 * 61.60560 * 8 4 2 11 11 O 1.21298 * 119.99723 * 18.55036 * 10 8 4 12 12 N 1.34772 * 120.00193 * 198.54734 * 10 8 4 13 13 C 1.39471 * 120.00000 * 180.02562 * 12 10 8 14 14 C 1.36109 * 126.21988 * 0.02562 * 13 12 10 15 15 C 1.39756 * 107.83364 * 180.02562 * 14 13 12 16 16 C 1.50691 * 125.84002 * 180.02562 * 15 14 13 17 17 N 1.30850 * 108.31874 * 0.02562 * 15 14 13 18 18 N 1.35268 * 126.21664 * 179.71565 * 13 12 10 19 19 C 1.46502 * 126.04296 * 359.97438 * 18 13 12 20 20 C 1.50694 * 109.46879 * 90.00175 * 19 18 13 21 21 H 1.08000 * 120.00361 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99710 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00214 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99786 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47203 * 90.00462 * 24 22 20 26 26 H 1.48505 * 109.46797 * 209.99979 * 24 22 20 27 27 H 1.48500 * 109.47363 * 330.00044 * 24 22 20 28 28 H 1.09000 * 109.46964 * 90.00343 * 1 2 3 29 29 H 1.09003 * 109.47060 * 210.00156 * 1 2 3 30 30 H 1.09001 * 109.46926 * 330.00454 * 1 2 3 31 31 H 1.09004 * 110.36802 * 274.74548 * 5 4 2 32 32 H 1.09004 * 110.36924 * 37.06499 * 5 4 2 33 33 H 1.09005 * 111.19378 * 279.19151 * 6 5 4 34 34 H 1.08999 * 110.93906 * 155.28614 * 6 5 4 35 35 H 1.09001 * 110.71954 * 205.97391 * 7 6 5 36 36 H 1.08993 * 110.72314 * 82.69667 * 7 6 5 37 37 H 0.96994 * 119.99963 * 359.97438 * 12 10 8 38 38 H 1.08008 * 126.08286 * 0.04221 * 14 13 12 39 39 H 1.09003 * 109.47583 * 89.99788 * 16 15 14 40 40 H 1.09003 * 109.47068 * 210.00234 * 16 15 14 41 41 H 1.09002 * 109.47351 * 329.99848 * 16 15 14 42 42 H 1.08999 * 109.46355 * 209.99794 * 19 18 13 43 43 H 1.08999 * 109.47255 * 329.99982 * 19 18 13 44 44 H 0.96995 * 120.00044 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.5731 -2.5103 0.0129 6 6 2.6571 -3.4369 -0.5975 7 6 3.9550 -2.8233 -0.0091 8 6 3.6440 -1.3119 0.0122 9 1 4.0677 -0.8338 -0.8710 10 6 4.2152 -0.6886 1.2597 11 8 3.4980 -0.4767 2.2148 12 7 5.5227 -0.3667 1.3143 13 6 6.0514 0.2097 2.4690 14 6 5.3665 0.5007 3.6087 15 6 6.2664 1.0659 4.5164 16 6 5.9359 1.5377 5.9088 17 7 7.4451 1.1154 3.9502 18 7 7.3392 0.5757 2.6620 19 6 8.4294 0.4364 1.6933 20 6 8.5126 1.6814 0.8484 21 1 7.8223 2.4949 1.0159 22 6 9.4702 1.7820 -0.1385 23 7 10.3106 0.7912 -0.3429 24 14 9.5729 3.3250 -1.1864 25 1 10.4900 4.3000 -0.5433 26 1 10.0892 2.9747 -2.5341 27 1 8.2215 3.9270 -1.3151 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.3400 -2.8158 1.0329 32 1 0.6735 -2.5229 -0.6026 33 1 2.6566 -3.3801 -1.6861 34 1 2.5242 -4.4654 -0.2620 35 1 4.8077 -3.0325 -0.6551 36 1 4.1340 -3.1945 0.9999 37 1 6.0962 -0.5365 0.5507 38 1 4.3147 0.3257 3.7810 39 1 6.0722 0.7166 6.6127 40 1 6.5962 2.3617 6.1796 41 1 4.9003 1.8762 5.9416 42 1 9.3708 0.2938 2.2239 43 1 8.2389 -0.4251 1.0533 44 1 10.9839 0.8618 -1.0374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523706995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:58 Heat of formation + Delta-G solvation = -14.779220 kcal Electronic energy + Delta-G solvation = -27577.329080 eV Core-core repulsion = 23723.490752 eV Total energy + Delta-G solvation = -3853.838328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56527 -41.56970 -39.95907 -38.24119 -36.32476 -35.64389 -33.89888 -33.14688 -31.47773 -30.72753 -30.10975 -29.23027 -27.85578 -25.32682 -24.73763 -23.35865 -22.28332 -21.42880 -21.12212 -19.96846 -18.93222 -18.55633 -18.33237 -17.96983 -16.85824 -16.81230 -16.54396 -16.37193 -15.97831 -15.63469 -15.42750 -14.95694 -14.57236 -14.47926 -14.37160 -14.09876 -13.98121 -13.64397 -13.52299 -13.44574 -13.27277 -13.18793 -13.03844 -12.94845 -12.78224 -12.74105 -12.34544 -12.10946 -11.97497 -11.83675 -11.73288 -11.49438 -11.04527 -11.00528 -10.79952 -9.81536 -9.68423 -9.12699 -8.40675 -6.57689 0.72292 1.13999 1.31954 1.33691 1.44733 1.58235 1.62943 1.90577 2.00908 2.21609 2.32848 2.89375 3.27476 3.39979 3.66076 3.77777 3.84629 4.00559 4.16187 4.20785 4.43300 4.50163 4.56591 4.61947 4.65663 4.71751 4.77526 4.80606 4.82818 4.85015 4.87102 4.89761 4.98101 5.08111 5.15362 5.16653 5.22819 5.31089 5.46837 5.72774 5.90577 6.08457 6.20399 6.43890 6.52674 6.88240 6.97176 7.10282 7.14197 8.65881 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010518 B = 0.004351 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.450397 B = 6433.973354 C = 7615.424652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.513 3.487 3 O -0.601 6.601 4 N -0.604 5.604 5 C 0.091 3.909 6 C -0.116 4.116 7 C -0.120 4.120 8 C 0.121 3.879 9 H 0.102 0.898 10 C 0.512 3.488 11 O -0.533 6.533 12 N -0.637 5.637 13 C 0.300 3.700 14 C -0.310 4.310 15 C 0.058 3.942 16 C -0.059 4.059 17 N -0.328 5.328 18 N -0.366 5.366 19 C 0.273 3.727 20 C -0.560 4.560 21 H 0.040 0.960 22 C 0.032 3.968 23 N -0.909 5.909 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.263 1.263 27 H -0.279 1.279 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.420 0.580 38 H 0.161 0.839 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.031 0.969 43 H 0.050 0.950 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.088 -13.140 -2.648 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.305 3.695 3 O -0.482 6.482 4 N -0.338 5.338 5 C -0.030 4.030 6 C -0.154 4.154 7 C -0.158 4.158 8 C 0.012 3.988 9 H 0.119 0.881 10 C 0.299 3.701 11 O -0.407 6.407 12 N -0.285 5.285 13 C 0.077 3.923 14 C -0.342 4.342 15 C -0.107 4.107 16 C -0.118 4.118 17 N -0.153 5.153 18 N -0.152 5.152 19 C 0.155 3.845 20 C -0.598 4.598 21 H 0.058 0.942 22 C -0.170 4.170 23 N -0.547 5.547 24 Si 0.789 3.211 25 H -0.199 1.199 26 H -0.187 1.187 27 H -0.204 1.204 28 H 0.138 0.862 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.257 0.743 38 H 0.178 0.822 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.917 -12.162 -2.101 22.587 hybrid contribution 0.355 0.937 -0.891 1.341 sum -18.561 -11.226 -2.992 21.897 Atomic orbital electron populations 1.21884 0.86915 1.06047 1.06542 1.21601 0.92526 0.81444 0.73888 1.90761 1.72200 1.33143 1.52071 1.48571 1.04556 1.07928 1.72719 1.22823 0.98450 0.79056 1.02627 1.22880 0.90634 0.99971 1.01872 1.22748 1.01862 0.87385 1.03785 1.21631 0.83806 1.00073 0.93241 0.88061 1.21797 0.79864 0.77324 0.91122 1.90572 1.58738 1.52809 1.38588 1.42966 1.11147 1.59857 1.14565 1.18339 0.85825 0.98361 0.89734 1.21403 1.01734 1.17655 0.93371 1.22890 0.90285 0.98473 0.99022 1.20219 1.02827 1.01846 0.86886 1.77279 1.23243 1.22753 0.92054 1.49181 1.06454 1.47303 1.12217 1.19237 0.83313 0.97508 0.84484 1.21384 1.17955 1.02271 1.18172 0.94184 1.25606 0.93988 0.99813 0.97572 1.69966 1.18735 1.32721 1.33286 0.85454 0.78226 0.79008 0.78380 1.19863 1.18735 1.20441 0.86155 0.87253 0.89541 0.90597 0.86501 0.88439 0.86495 0.86789 0.90499 0.74277 0.82217 0.88858 0.90732 0.89196 0.95102 0.93182 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.67 71.24 0.69 -1.64 16 2 C 0.51 14.12 7.36 87.66 0.64 14.76 16 3 O -0.60 -24.38 16.91 -3.04 -0.05 -24.43 16 4 N -0.60 -13.43 2.75 -791.73 -2.18 -15.61 16 5 C 0.09 0.98 6.27 86.93 0.55 1.52 16 6 C -0.12 -0.87 7.10 32.06 0.23 -0.65 16 7 C -0.12 -1.79 6.46 31.78 0.21 -1.59 16 8 C 0.12 3.01 3.26 44.59 0.15 3.15 16 9 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 10 C 0.51 18.24 6.23 87.66 0.55 18.78 16 11 O -0.53 -21.90 13.26 -3.09 -0.04 -21.94 16 12 N -0.64 -25.08 5.41 -308.56 -1.67 -26.75 16 13 C 0.30 14.07 7.66 131.32 1.01 15.07 16 14 C -0.31 -14.05 9.58 22.14 0.21 -13.84 16 15 C 0.06 2.54 7.21 43.07 0.31 2.85 16 16 C -0.06 -1.82 10.44 71.23 0.74 -1.07 16 17 N -0.33 -16.55 12.56 -47.46 -0.60 -17.14 16 18 N -0.37 -18.75 3.60 -348.72 -1.26 -20.01 16 19 C 0.27 14.68 6.01 85.63 0.51 15.20 16 20 C -0.56 -32.25 9.39 25.60 0.24 -32.01 16 21 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 22 C 0.03 1.78 5.46 84.66 0.46 2.24 16 23 N -0.91 -50.58 13.29 21.45 0.28 -50.29 16 24 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 0.98 7.17 -2.39 -0.02 0.96 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.12 0.49 7.54 -2.38 -0.02 0.47 16 33 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.31 7.84 -2.39 -0.02 1.29 16 37 H 0.42 15.21 7.97 -92.71 -0.74 14.47 16 38 H 0.16 7.17 5.83 -2.91 -0.02 7.15 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 2.56 7.50 -2.39 -0.02 2.55 16 44 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -85.37 370.28 3.29 -82.07 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.29 Total: 25.20 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.49 Total: 22.78 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -5.42 Total: -129.80 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.09 Total: -46.37 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -85.37 3.29 -82.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523706995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.295 kcal (2) G-P(sol) polarization free energy of solvation -85.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds