Wall clock time and date at job start Tue Mar 31 2020 13:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99950 * 2 1 4 4 N 1.34772 * 120.00190 * 179.97438 * 2 1 3 5 5 C 1.47187 * 125.73628 * 0.05400 * 4 2 1 6 6 C 1.54323 * 107.29782 * 179.04686 * 5 4 2 7 7 C 1.55161 * 102.93844 * 337.71371 * 6 5 4 8 8 C 1.47423 * 125.65315 * 180.02562 * 4 2 1 9 9 H 1.09005 * 110.36744 * 85.14068 * 8 4 2 10 10 C 1.50706 * 110.36509 * 322.93357 * 8 4 2 11 11 O 1.21290 * 119.99589 * 342.93005 * 10 8 4 12 12 N 1.34769 * 120.00073 * 162.93716 * 10 8 4 13 13 C 1.39475 * 120.00376 * 179.97438 * 12 10 8 14 14 C 1.36118 * 126.21022 * 0.02562 * 13 12 10 15 15 C 1.39752 * 107.82460 * 180.02562 * 14 13 12 16 16 C 1.50707 * 125.83619 * 180.02562 * 15 14 13 17 17 N 1.30843 * 108.32948 * 359.97438 * 15 14 13 18 18 N 1.35261 * 126.22232 * 179.71430 * 13 12 10 19 19 C 1.46501 * 126.04393 * 359.97438 * 18 13 12 20 20 C 1.50692 * 109.46968 * 90.00290 * 19 18 13 21 21 H 1.08004 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00194 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99534 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00283 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47025 * 89.99686 * 24 22 20 26 26 H 1.48499 * 109.47467 * 209.99465 * 24 22 20 27 27 H 1.48504 * 109.47287 * 329.99807 * 24 22 20 28 28 H 1.08998 * 109.47219 * 270.00218 * 1 2 3 29 29 H 1.08999 * 109.47230 * 30.00420 * 1 2 3 30 30 H 1.09002 * 109.47313 * 150.00106 * 1 2 3 31 31 H 1.09000 * 109.94705 * 59.57774 * 5 4 2 32 32 H 1.09000 * 109.92153 * 298.49852 * 5 4 2 33 33 H 1.09001 * 110.72038 * 219.35535 * 6 5 4 34 34 H 1.09000 * 110.72011 * 96.07491 * 6 5 4 35 35 H 1.09001 * 111.00351 * 277.42549 * 7 6 5 36 36 H 1.09002 * 111.00251 * 153.57646 * 7 6 5 37 37 H 0.97006 * 120.00128 * 359.97438 * 12 10 8 38 38 H 1.08000 * 126.08625 * 0.03980 * 14 13 12 39 39 H 1.09002 * 109.46959 * 90.00346 * 16 15 14 40 40 H 1.09001 * 109.46910 * 209.99779 * 16 15 14 41 41 H 1.08993 * 109.47034 * 330.00147 * 16 15 14 42 42 H 1.08998 * 109.46784 * 210.00431 * 19 18 13 43 43 H 1.08999 * 109.46744 * 330.00023 * 19 18 13 44 44 H 0.97003 * 119.99517 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5761 -2.5090 0.0000 6 6 2.7306 -3.5327 -0.0236 7 6 3.9105 -2.7122 -0.6085 8 6 3.6479 -1.3123 0.0011 9 1 4.0336 -1.2633 1.0195 10 6 4.2812 -0.2422 -0.8505 11 8 3.6085 0.3734 -1.6502 12 7 5.5949 0.0304 -0.7235 13 6 6.1811 1.0203 -1.5120 14 6 5.5493 1.7849 -2.4442 15 6 6.4961 2.6480 -3.0026 16 6 6.2319 3.6716 -4.0767 17 7 7.6509 2.4163 -2.4327 18 7 7.4793 1.3991 -1.4851 19 6 8.5222 0.8416 -0.6203 20 6 9.1835 -0.3202 -1.3158 21 1 8.8591 -0.6142 -2.3031 22 6 10.2020 -1.0086 -0.6914 23 7 10.5966 -0.6508 0.5111 24 14 11.0212 -2.4491 -1.5532 25 1 12.1754 -1.9587 -2.3487 26 1 11.4971 -3.4260 -0.5411 27 1 10.0426 -3.1080 -2.4553 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.9510 -2.6348 -0.8841 32 1 0.9769 -2.6467 0.9001 33 1 2.4869 -4.3740 -0.6724 34 1 2.9621 -3.8762 0.9846 35 1 3.8624 -2.6800 -1.6969 36 1 4.8679 -3.1109 -0.2729 37 1 6.1328 -0.4618 -0.0837 38 1 4.5027 1.7339 -2.7056 39 1 5.9543 4.6192 -3.6152 40 1 7.1316 3.8093 -4.6765 41 1 5.4188 3.3265 -4.7153 42 1 9.2663 1.6091 -0.4075 43 1 8.0755 0.4997 0.3134 44 1 11.3129 -1.1354 0.9505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523706996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:02 Heat of formation + Delta-G solvation = 14.055098 kcal Electronic energy + Delta-G solvation = -27657.754296 eV Core-core repulsion = 23805.166317 eV Total energy + Delta-G solvation = -3852.587978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01583 -40.23103 -38.40539 -37.27310 -34.58773 -33.69185 -32.23760 -31.96476 -30.48016 -29.25111 -28.90144 -27.80966 -25.97487 -24.25106 -22.86081 -22.19327 -21.34136 -19.91353 -19.51271 -18.67626 -17.34888 -17.06285 -16.82020 -16.38207 -15.53970 -15.43648 -15.02879 -14.75909 -14.58632 -14.13702 -14.04872 -13.75261 -13.45407 -13.30986 -12.80463 -12.72898 -12.68827 -12.62874 -12.42735 -12.09246 -12.07083 -11.81832 -11.69790 -11.62435 -11.51225 -11.14141 -11.04071 -10.87617 -10.33494 -10.23925 -9.82584 -9.78072 -9.75054 -9.39168 -8.74008 -8.70462 -7.81993 -7.30906 -6.31283 -4.39602 2.35982 2.55389 2.78874 3.05768 3.16746 3.21878 3.24226 3.28861 3.71380 3.87180 4.14823 4.24194 4.26288 4.56936 4.69484 4.78873 4.90865 5.01821 5.03903 5.08192 5.22446 5.29147 5.44286 5.45669 5.53227 5.61032 5.65903 5.72601 5.83022 6.01558 6.10559 6.23766 6.29347 6.38961 6.54929 6.78185 6.90875 7.10957 7.38309 7.60564 7.64067 7.73708 7.83385 8.02020 8.20049 8.46926 8.67467 8.78764 9.27610 10.75784 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.004453 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.963764 B = 6286.177467 C = 8133.131947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.525 3.475 3 O -0.513 6.513 4 N -0.611 5.611 5 C 0.104 3.896 6 C -0.129 4.129 7 C -0.125 4.125 8 C 0.123 3.877 9 H 0.100 0.900 10 C 0.517 3.483 11 O -0.485 6.485 12 N -0.640 5.640 13 C 0.307 3.693 14 C -0.293 4.293 15 C 0.050 3.950 16 C -0.061 4.061 17 N -0.288 5.288 18 N -0.346 5.346 19 C 0.257 3.743 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.160 0.840 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.409 -7.067 1.259 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.314 3.686 3 O -0.386 6.386 4 N -0.349 5.349 5 C -0.019 4.019 6 C -0.167 4.167 7 C -0.163 4.163 8 C 0.016 3.984 9 H 0.118 0.882 10 C 0.301 3.699 11 O -0.356 6.356 12 N -0.287 5.287 13 C 0.084 3.916 14 C -0.325 4.325 15 C -0.115 4.115 16 C -0.120 4.120 17 N -0.113 5.113 18 N -0.132 5.132 19 C 0.139 3.861 20 C -0.577 4.577 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.733 3.267 25 H -0.202 1.202 26 H -0.209 1.209 27 H -0.197 1.197 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.250 0.750 38 H 0.177 0.823 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.224 -5.752 1.009 19.137 hybrid contribution 0.152 -1.474 0.131 1.488 sum -18.072 -7.227 1.140 19.497 Atomic orbital electron populations 1.21839 0.91419 1.04783 1.04304 1.20437 0.90194 0.82093 0.75895 1.90822 1.70119 1.30329 1.47331 1.48393 1.04846 1.06267 1.75422 1.22065 0.96426 0.81487 1.01948 1.22642 0.94028 0.97523 1.02532 1.22818 1.00095 0.91505 1.01879 1.21721 0.82619 0.94495 0.99610 0.88226 1.20291 0.80879 0.84260 0.84453 1.90649 1.61051 1.48536 1.35326 1.42665 1.09741 1.36350 1.39985 1.17884 0.85786 0.92514 0.95372 1.21247 1.01723 1.04249 1.05284 1.22010 0.91334 0.98932 0.99237 1.20004 1.01722 0.95507 0.94747 1.77326 1.21348 1.06990 1.05638 1.49308 1.05640 1.27726 1.30532 1.19591 0.84544 0.94587 0.87371 1.21354 1.19082 1.13793 1.03458 0.91726 1.24936 0.96096 0.97795 0.94877 1.69927 1.28773 1.40831 1.13285 0.86363 0.79812 0.81348 0.79211 1.20232 1.20876 1.19703 0.89140 0.88879 0.90428 0.91111 0.90942 0.89354 0.89923 0.89629 0.88333 0.75039 0.82314 0.91428 0.91571 0.91250 0.92626 0.93891 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.91 36.00 0.36 -1.04 16 2 C 0.52 7.21 7.21 -10.99 -0.08 7.13 16 3 O -0.51 -9.83 14.55 -18.31 -0.27 -10.10 16 4 N -0.61 -7.06 3.14 -164.21 -0.52 -7.57 16 5 C 0.10 0.71 6.17 -2.97 -0.02 0.69 16 6 C -0.13 -0.78 6.95 -24.89 -0.17 -0.95 16 7 C -0.12 -1.16 6.49 -24.57 -0.16 -1.32 16 8 C 0.12 1.53 3.56 -67.56 -0.24 1.29 16 9 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 10 C 0.52 9.08 6.16 -10.99 -0.07 9.01 16 11 O -0.48 -10.00 11.03 -18.32 -0.20 -10.20 16 12 N -0.64 -12.12 5.41 -11.46 -0.06 -12.19 16 13 C 0.31 6.98 7.66 -153.15 -1.17 5.80 16 14 C -0.29 -6.60 9.58 -39.78 -0.38 -6.98 16 15 C 0.05 1.08 7.21 -82.44 -0.59 0.49 16 16 C -0.06 -1.00 10.44 36.01 0.38 -0.62 16 17 N -0.29 -7.08 12.56 33.65 0.42 -6.66 16 18 N -0.35 -8.55 3.60 -61.57 -0.22 -8.77 16 19 C 0.26 6.62 6.00 -5.20 -0.03 6.59 16 20 C -0.54 -14.62 9.39 -34.44 -0.32 -14.95 16 21 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.45 13.29 55.43 0.74 -23.72 16 24 Si 0.91 20.61 29.54 -169.99 -5.02 15.58 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.47 7.08 -51.93 -0.37 0.11 16 31 H 0.07 0.42 7.78 -51.93 -0.40 0.02 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.41 7.10 7.97 -40.82 -0.33 6.77 16 38 H 0.16 3.60 5.83 -52.49 -0.31 3.29 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -36.42 366.53 -8.62 -45.04 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.41 Total: 6.25 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.61 Total: 6.81 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.36 Total: -58.90 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.47 Total: -20.30 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.42 -8.62 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523706996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.091 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds