Wall clock time and date at job start Tue Mar 31 2020 13:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99950 * 2 1 4 4 N 1.34772 * 120.00190 * 179.97438 * 2 1 3 5 5 C 1.47187 * 125.73628 * 0.05400 * 4 2 1 6 6 C 1.54323 * 107.29782 * 179.04686 * 5 4 2 7 7 C 1.55161 * 102.93844 * 337.71371 * 6 5 4 8 8 C 1.47423 * 125.65315 * 180.02562 * 4 2 1 9 9 H 1.09005 * 110.36744 * 85.14068 * 8 4 2 10 10 C 1.50706 * 110.36509 * 322.93357 * 8 4 2 11 11 O 1.21290 * 119.99589 * 342.93005 * 10 8 4 12 12 N 1.34769 * 120.00073 * 162.93716 * 10 8 4 13 13 C 1.39475 * 120.00376 * 179.97438 * 12 10 8 14 14 C 1.36118 * 126.21022 * 0.02562 * 13 12 10 15 15 C 1.39752 * 107.82460 * 180.02562 * 14 13 12 16 16 C 1.50707 * 125.83619 * 180.02562 * 15 14 13 17 17 N 1.30843 * 108.32948 * 359.97438 * 15 14 13 18 18 N 1.35261 * 126.22232 * 179.71430 * 13 12 10 19 19 C 1.46501 * 126.04393 * 359.97438 * 18 13 12 20 20 C 1.50692 * 109.46968 * 90.00290 * 19 18 13 21 21 H 1.08004 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00194 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99534 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00283 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47025 * 89.99686 * 24 22 20 26 26 H 1.48499 * 109.47467 * 209.99465 * 24 22 20 27 27 H 1.48504 * 109.47287 * 329.99807 * 24 22 20 28 28 H 1.08998 * 109.47219 * 270.00218 * 1 2 3 29 29 H 1.08999 * 109.47230 * 30.00420 * 1 2 3 30 30 H 1.09002 * 109.47313 * 150.00106 * 1 2 3 31 31 H 1.09000 * 109.94705 * 59.57774 * 5 4 2 32 32 H 1.09000 * 109.92153 * 298.49852 * 5 4 2 33 33 H 1.09001 * 110.72038 * 219.35535 * 6 5 4 34 34 H 1.09000 * 110.72011 * 96.07491 * 6 5 4 35 35 H 1.09001 * 111.00351 * 277.42549 * 7 6 5 36 36 H 1.09002 * 111.00251 * 153.57646 * 7 6 5 37 37 H 0.97006 * 120.00128 * 359.97438 * 12 10 8 38 38 H 1.08000 * 126.08625 * 0.03980 * 14 13 12 39 39 H 1.09002 * 109.46959 * 90.00346 * 16 15 14 40 40 H 1.09001 * 109.46910 * 209.99779 * 16 15 14 41 41 H 1.08993 * 109.47034 * 330.00147 * 16 15 14 42 42 H 1.08998 * 109.46784 * 210.00431 * 19 18 13 43 43 H 1.08999 * 109.46744 * 330.00023 * 19 18 13 44 44 H 0.97003 * 119.99517 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5761 -2.5090 0.0000 6 6 2.7306 -3.5327 -0.0236 7 6 3.9105 -2.7122 -0.6085 8 6 3.6479 -1.3123 0.0011 9 1 4.0336 -1.2633 1.0195 10 6 4.2812 -0.2422 -0.8505 11 8 3.6085 0.3734 -1.6502 12 7 5.5949 0.0304 -0.7235 13 6 6.1811 1.0203 -1.5120 14 6 5.5493 1.7849 -2.4442 15 6 6.4961 2.6480 -3.0026 16 6 6.2319 3.6716 -4.0767 17 7 7.6509 2.4163 -2.4327 18 7 7.4793 1.3991 -1.4851 19 6 8.5222 0.8416 -0.6203 20 6 9.1835 -0.3202 -1.3158 21 1 8.8591 -0.6142 -2.3031 22 6 10.2020 -1.0086 -0.6914 23 7 10.5966 -0.6508 0.5111 24 14 11.0212 -2.4491 -1.5532 25 1 12.1754 -1.9587 -2.3487 26 1 11.4971 -3.4260 -0.5411 27 1 10.0426 -3.1080 -2.4553 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.9510 -2.6348 -0.8841 32 1 0.9769 -2.6467 0.9001 33 1 2.4869 -4.3740 -0.6724 34 1 2.9621 -3.8762 0.9846 35 1 3.8624 -2.6800 -1.6969 36 1 4.8679 -3.1109 -0.2729 37 1 6.1328 -0.4618 -0.0837 38 1 4.5027 1.7339 -2.7056 39 1 5.9543 4.6192 -3.6152 40 1 7.1316 3.8093 -4.6765 41 1 5.4188 3.3265 -4.7153 42 1 9.2663 1.6091 -0.4075 43 1 8.0755 0.4997 0.3134 44 1 11.3129 -1.1354 0.9505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523706996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:01 Heat of formation + Delta-G solvation = -10.221030 kcal Electronic energy + Delta-G solvation = -27658.806987 eV Core-core repulsion = 23805.166317 eV Total energy + Delta-G solvation = -3853.640670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52672 -41.53872 -39.74657 -38.23415 -36.27062 -35.58923 -33.86738 -33.07426 -31.45159 -30.70595 -30.06199 -29.21118 -27.83624 -25.27381 -24.69570 -23.34195 -22.27059 -21.39082 -21.07604 -19.88002 -18.89284 -18.56336 -18.23574 -17.85429 -16.78703 -16.64507 -16.55815 -16.26971 -15.84886 -15.65540 -15.32564 -14.91535 -14.55387 -14.46461 -14.35284 -14.12584 -14.07720 -13.62841 -13.41754 -13.39231 -13.29545 -13.16114 -12.96228 -12.91159 -12.73617 -12.71442 -12.29800 -12.19946 -11.90124 -11.73033 -11.69422 -11.46654 -10.95557 -10.78827 -10.77216 -9.70977 -9.64768 -9.08200 -8.36696 -6.54933 0.78339 1.25275 1.36385 1.39060 1.49370 1.60156 1.72787 1.93665 2.06569 2.24392 2.36013 2.93433 3.25920 3.48588 3.68876 3.79075 3.91677 4.01722 4.17324 4.22944 4.40417 4.50876 4.58855 4.63983 4.68187 4.75337 4.80490 4.83882 4.85280 4.87441 4.89499 4.91966 4.99856 5.09654 5.17369 5.18525 5.23955 5.33425 5.50152 5.75193 5.92346 6.12773 6.25857 6.51121 6.56829 6.95441 7.01701 7.17174 7.26126 8.70220 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.004453 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.963764 B = 6286.177467 C = 8133.131947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.510 3.490 3 O -0.583 6.583 4 N -0.612 5.612 5 C 0.095 3.905 6 C -0.116 4.116 7 C -0.123 4.123 8 C 0.121 3.879 9 H 0.114 0.886 10 C 0.510 3.490 11 O -0.516 6.516 12 N -0.639 5.639 13 C 0.304 3.696 14 C -0.311 4.311 15 C 0.058 3.942 16 C -0.059 4.059 17 N -0.329 5.329 18 N -0.367 5.367 19 C 0.272 3.728 20 C -0.556 4.556 21 H 0.048 0.952 22 C 0.028 3.972 23 N -0.915 5.915 24 Si 0.972 3.028 25 H -0.278 1.278 26 H -0.266 1.266 27 H -0.268 1.268 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.419 0.581 38 H 0.157 0.843 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.045 0.955 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.068 -9.815 1.347 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.301 3.699 3 O -0.462 6.462 4 N -0.348 5.348 5 C -0.025 4.025 6 C -0.154 4.154 7 C -0.161 4.161 8 C 0.013 3.987 9 H 0.132 0.868 10 C 0.297 3.703 11 O -0.389 6.389 12 N -0.288 5.288 13 C 0.082 3.918 14 C -0.343 4.343 15 C -0.107 4.107 16 C -0.117 4.117 17 N -0.155 5.155 18 N -0.152 5.152 19 C 0.154 3.846 20 C -0.594 4.594 21 H 0.066 0.934 22 C -0.174 4.174 23 N -0.552 5.552 24 Si 0.796 3.204 25 H -0.204 1.204 26 H -0.191 1.191 27 H -0.193 1.193 28 H 0.133 0.867 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.257 0.743 38 H 0.174 0.826 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.920 -8.565 1.117 21.712 hybrid contribution 0.596 -0.594 0.106 0.848 sum -19.324 -9.159 1.223 21.419 Atomic orbital electron populations 1.21849 0.87398 1.05833 1.06180 1.21447 0.92226 0.81640 0.74551 1.90786 1.71782 1.32871 1.50739 1.48634 1.04432 1.07754 1.73971 1.22455 0.97008 0.78902 1.04173 1.22694 0.91630 0.97251 1.03820 1.22861 1.02375 0.90000 1.00891 1.21929 0.83383 0.94072 0.99308 0.86802 1.21421 0.79917 0.84597 0.84336 1.90614 1.61439 1.49901 1.36932 1.42911 1.10519 1.35680 1.39696 1.18285 0.85183 0.92904 0.95470 1.21378 1.01732 1.05099 1.06043 1.22869 0.90071 0.98779 0.99004 1.20209 1.03086 0.94818 0.93635 1.77269 1.23093 1.08144 1.06949 1.49168 1.06040 1.28725 1.31295 1.19239 0.84285 0.93331 0.87780 1.21377 1.20245 1.14752 1.02996 0.93415 1.25715 0.96115 1.00124 0.95411 1.70005 1.29077 1.41843 1.14318 0.85344 0.78467 0.78211 0.78375 1.20392 1.19078 1.19284 0.86688 0.89718 0.87430 0.89694 0.87899 0.87113 0.88054 0.91266 0.87393 0.74328 0.82554 0.89431 0.90475 0.89059 0.95608 0.93680 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.23 0.71 -1.59 16 2 C 0.51 13.76 7.21 87.66 0.63 14.39 16 3 O -0.58 -23.25 14.55 19.78 0.29 -22.96 16 4 N -0.61 -13.14 3.14 -791.82 -2.49 -15.63 16 5 C 0.10 0.94 6.17 86.70 0.53 1.48 16 6 C -0.12 -0.94 6.95 31.78 0.22 -0.72 16 7 C -0.12 -2.07 6.49 31.99 0.21 -1.86 16 8 C 0.12 2.93 3.56 44.73 0.16 3.09 16 9 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 10 C 0.51 18.47 6.16 87.66 0.54 19.01 16 11 O -0.52 -22.16 11.03 19.76 0.22 -21.94 16 12 N -0.64 -25.26 5.41 -308.56 -1.67 -26.93 16 13 C 0.30 14.46 7.66 131.32 1.01 15.47 16 14 C -0.31 -14.50 9.58 22.14 0.21 -14.29 16 15 C 0.06 2.58 7.21 43.07 0.31 2.89 16 16 C -0.06 -1.88 10.44 71.24 0.74 -1.13 16 17 N -0.33 -16.83 12.56 -47.45 -0.60 -17.43 16 18 N -0.37 -18.95 3.60 -348.72 -1.26 -20.21 16 19 C 0.27 14.70 6.00 85.63 0.51 15.22 16 20 C -0.56 -31.02 9.39 25.60 0.24 -30.78 16 21 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 22 C 0.03 1.50 5.46 84.66 0.46 1.96 16 23 N -0.91 -50.50 13.29 21.45 0.28 -50.22 16 24 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 0.93 7.08 -2.39 -0.02 0.91 16 31 H 0.08 0.65 7.78 -2.39 -0.02 0.63 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.42 15.03 7.97 -92.70 -0.74 14.29 16 38 H 0.16 7.38 5.83 -2.91 -0.02 7.37 16 39 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 41 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 2.36 7.50 -2.39 -0.02 2.34 16 44 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -84.10 366.53 3.58 -80.53 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.29 Total: 27.67 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 6.49 Total: 23.13 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -5.73 Total: -130.41 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: 0.51 Total: -44.90 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -84.10 3.58 -80.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523706996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.304 kcal (2) G-P(sol) polarization free energy of solvation -84.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds