Wall clock time and date at job start Tue Mar 31 2020 12:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48505 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47338 * 300.00144 * 3 2 1 6 6 H 1.48504 * 109.46884 * 60.00484 * 3 2 1 7 7 C 1.37876 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99665 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46805 * 180.02562 * 10 9 7 12 12 S 1.81405 * 109.46776 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.46874 * 289.05598 * 12 11 10 14 14 C 1.76207 * 102.99802 * 179.97438 * 12 11 10 15 15 C 1.38234 * 119.99809 * 90.00046 * 14 12 11 16 16 C 1.38233 * 120.00417 * 179.97438 * 15 14 12 17 17 C 1.38240 * 119.99296 * 359.95790 * 16 15 14 18 18 C 1.50703 * 119.99707 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.47126 * 119.99631 * 18 17 16 20 20 C 1.52997 * 109.47127 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47060 * 300.00449 * 20 19 18 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.47084 * 239.99662 * 18 17 16 24 24 C 1.38229 * 120.00408 * 0.27128 * 17 16 15 25 25 C 1.38230 * 120.00312 * 269.97735 * 14 12 11 26 26 H 0.97003 * 120.00084 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46561 * 60.00722 * 9 7 2 28 28 H 1.09000 * 109.47721 * 300.00522 * 9 7 2 29 29 H 1.08995 * 109.46581 * 60.00687 * 10 9 7 30 30 H 1.08993 * 109.47238 * 300.00366 * 10 9 7 31 31 H 1.08998 * 109.47561 * 60.00454 * 11 10 9 32 32 H 1.09000 * 109.47605 * 300.00271 * 11 10 9 33 33 H 1.08004 * 120.00143 * 359.97438 * 15 14 12 34 34 H 1.07993 * 120.00509 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.46980 * 359.97438 * 18 17 16 36 36 H 1.08998 * 109.46505 * 59.99690 * 19 18 17 37 37 H 1.08996 * 109.46884 * 300.00571 * 19 18 17 38 38 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.46832 * 60.00321 * 20 19 18 40 40 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 42 42 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 43 43 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47045 * 60.00033 * 23 18 17 45 45 H 1.09001 * 109.47375 * 299.99958 * 23 18 17 46 46 H 1.07998 * 120.00210 * 179.72749 * 24 17 16 47 47 H 1.08003 * 119.99792 * 0.02562 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 16 2.6592 -6.3658 -0.0004 13 8 3.3004 -6.4414 -1.2662 14 6 1.6118 -7.7828 -0.0005 15 6 1.2015 -8.3388 -1.1977 16 6 0.3802 -9.4508 -1.1979 17 6 -0.0300 -10.0071 -0.0007 18 6 -0.9248 -11.2197 -0.0009 19 6 -0.2223 -12.3721 0.7199 20 6 -1.1311 -13.6030 0.7204 21 6 -2.4386 -13.2713 1.4423 22 6 -3.1411 -12.1190 0.7214 23 6 -2.2326 -10.8885 0.7207 24 6 0.3765 -9.4483 1.1964 25 6 1.2009 -8.3386 1.1965 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5566 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8904 31 1 0.8540 -5.0446 -0.8914 32 1 0.8533 -5.0451 0.8885 33 1 1.5225 -7.9045 -2.1330 34 1 0.0593 -9.8849 -2.1332 35 1 -1.1411 -11.5115 -1.0286 36 1 -0.0063 -12.0799 1.7476 37 1 0.7094 -12.6080 0.2059 38 1 -0.6308 -14.4238 1.2343 39 1 -1.3474 -13.8952 -0.3072 40 1 -3.0858 -14.1483 1.4429 41 1 -2.2223 -12.9790 2.4699 42 1 -3.3574 -12.4112 -0.3061 43 1 -4.0729 -11.8830 1.2355 44 1 -2.7331 -10.0675 0.2072 45 1 -2.0167 -10.5964 1.7485 46 1 0.0525 -9.8804 2.1317 47 1 1.5215 -7.9042 2.1319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524613105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:49 Heat of formation + Delta-G solvation = -60.980305 kcal Electronic energy + Delta-G solvation = -23559.825980 eV Core-core repulsion = 20217.984686 eV Total energy + Delta-G solvation = -3341.841294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07625 -38.01906 -35.45001 -34.39894 -33.00698 -31.99606 -31.11823 -31.06948 -29.02848 -27.45326 -23.99010 -23.34600 -22.92513 -22.90977 -21.26842 -20.28513 -19.82377 -17.99086 -16.75496 -16.27649 -15.92504 -15.58146 -15.01913 -14.64831 -14.56078 -14.55492 -14.41589 -14.26879 -14.13597 -13.46219 -13.39982 -13.27093 -12.56704 -12.46775 -12.35824 -12.30686 -11.99222 -11.88558 -11.63102 -11.51472 -11.31785 -11.19547 -10.86827 -10.78122 -10.76418 -10.64585 -10.53567 -10.44603 -10.09311 -9.77525 -9.31600 -9.09915 -9.02946 -8.98240 -8.35238 -8.02086 -5.99716 -4.02346 0.87317 1.30251 2.05940 2.94863 3.31786 3.39190 3.43805 3.58209 4.13129 4.20817 4.32201 4.43769 4.46771 4.66577 4.79641 4.86825 4.90494 4.95997 5.11489 5.14077 5.15776 5.26456 5.29501 5.35929 5.38222 5.47913 5.57001 5.66018 5.67411 5.72752 5.74055 5.75320 5.76058 5.86068 5.93500 5.96545 6.05909 6.19627 6.24083 6.26447 6.44577 6.54298 6.73733 6.85228 7.06559 7.67671 7.80310 8.00068 8.41670 9.05057 9.61864 11.11537 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.002136 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.221376 B =13106.190399 C =13847.304073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.436 4.436 12 S 1.308 4.692 13 O -0.859 6.859 14 C -0.457 4.457 15 C -0.051 4.051 16 C -0.135 4.135 17 C -0.048 4.048 18 C -0.050 4.050 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.134 4.134 25 C -0.043 4.043 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.019 0.981 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.125 0.875 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 -28.545 6.363 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.574 4.574 12 S 1.508 4.492 13 O -0.855 6.855 14 C -0.552 4.552 15 C -0.070 4.070 16 C -0.154 4.154 17 C -0.048 4.048 18 C -0.069 4.069 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.062 4.062 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.142 0.858 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.986 -28.443 6.334 29.208 hybrid contribution -1.259 0.857 -1.909 2.442 sum -3.245 -27.586 4.424 28.127 Atomic orbital electron populations 1.69977 1.06089 1.26494 1.50987 1.25040 0.94864 0.99328 0.95331 0.86528 0.80175 0.83715 0.77554 1.19640 1.21069 1.20976 1.21322 0.93192 0.91028 1.50426 0.92448 1.19096 0.93828 0.90903 0.97355 1.21314 0.98971 0.91984 1.00952 1.27762 1.11832 1.10618 1.07216 1.69332 0.87347 0.82916 1.09596 1.93072 1.63909 1.83665 1.44817 1.27939 1.13947 1.16404 0.96929 1.21138 0.93509 0.94504 0.97842 1.21127 0.99535 0.97183 0.97551 1.20000 0.95915 0.95576 0.93347 1.20241 0.93872 0.92236 1.00533 1.21594 0.98180 0.94161 1.00827 1.21543 0.95907 0.97464 1.00803 1.21550 0.96546 0.98182 0.99521 1.21534 0.98235 0.95159 1.00815 1.21595 0.94652 0.97754 1.00882 1.21056 0.99455 0.97243 0.97558 1.20861 0.94313 0.94335 0.96723 0.93065 0.96766 0.96272 0.92056 0.92933 0.90053 0.87127 0.85671 0.86223 0.90497 0.91535 0.91842 0.91923 0.92031 0.92147 0.91923 0.92033 0.91852 0.91730 0.91506 0.85753 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.91 5.16 -26.73 -0.14 -2.05 16 11 C -0.44 -7.24 5.88 37.16 0.22 -7.02 16 12 S 1.31 17.74 13.55 -107.50 -1.46 16.28 16 13 O -0.86 -16.79 16.90 -35.23 -0.60 -17.38 16 14 C -0.46 -5.88 5.61 -39.59 -0.22 -6.10 16 15 C -0.05 -0.72 9.44 -39.58 -0.37 -1.09 16 16 C -0.13 -1.60 9.67 -39.58 -0.38 -1.99 16 17 C -0.05 -0.49 4.78 -104.62 -0.50 -0.99 16 18 C -0.05 -0.40 2.36 -91.77 -0.22 -0.62 16 19 C -0.11 -0.76 5.02 -26.73 -0.13 -0.89 16 20 C -0.12 -0.71 5.92 -26.73 -0.16 -0.86 16 21 C -0.12 -0.69 5.92 -26.73 -0.16 -0.84 16 22 C -0.12 -0.75 5.92 -26.76 -0.16 -0.91 16 23 C -0.11 -0.83 5.01 -26.76 -0.13 -0.96 16 24 C -0.13 -1.29 8.71 -39.59 -0.34 -1.63 16 25 C -0.04 -0.44 9.75 -39.59 -0.39 -0.82 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.13 1.95 7.46 -52.48 -0.39 1.56 16 34 H 0.12 1.23 7.95 -52.49 -0.42 0.81 16 35 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 36 H 0.07 0.44 7.40 -51.93 -0.38 0.06 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.48 7.37 -51.93 -0.38 0.10 16 46 H 0.12 0.91 7.10 -52.49 -0.37 0.54 16 47 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -36.11 386.57 -12.39 -48.50 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -8.24 Total: -3.59 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: -3.64 Total: -39.97 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.60 Total: -17.38 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 17.74 SS G_CDS: -1.46 Total: 16.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.11 -12.39 -48.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524613105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.475 kcal (2) G-P(sol) polarization free energy of solvation -36.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds