Wall clock time and date at job start Tue Mar 31 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48505 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47338 * 300.00144 * 3 2 1 6 6 H 1.48504 * 109.46884 * 60.00484 * 3 2 1 7 7 C 1.37876 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99665 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46805 * 180.02562 * 10 9 7 12 12 S 1.81405 * 109.46776 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.46874 * 289.05598 * 12 11 10 14 14 C 1.76207 * 102.99802 * 179.97438 * 12 11 10 15 15 C 1.38234 * 119.99809 * 90.00046 * 14 12 11 16 16 C 1.38233 * 120.00417 * 179.97438 * 15 14 12 17 17 C 1.38240 * 119.99296 * 359.95790 * 16 15 14 18 18 C 1.50703 * 119.99707 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.47126 * 119.99631 * 18 17 16 20 20 C 1.52997 * 109.47127 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47060 * 300.00449 * 20 19 18 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.47084 * 239.99662 * 18 17 16 24 24 C 1.38229 * 120.00408 * 0.27128 * 17 16 15 25 25 C 1.38230 * 120.00312 * 269.97735 * 14 12 11 26 26 H 0.97003 * 120.00084 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46561 * 60.00722 * 9 7 2 28 28 H 1.09000 * 109.47721 * 300.00522 * 9 7 2 29 29 H 1.08995 * 109.46581 * 60.00687 * 10 9 7 30 30 H 1.08993 * 109.47238 * 300.00366 * 10 9 7 31 31 H 1.08998 * 109.47561 * 60.00454 * 11 10 9 32 32 H 1.09000 * 109.47605 * 300.00271 * 11 10 9 33 33 H 1.08004 * 120.00143 * 359.97438 * 15 14 12 34 34 H 1.07993 * 120.00509 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.46980 * 359.97438 * 18 17 16 36 36 H 1.08998 * 109.46505 * 59.99690 * 19 18 17 37 37 H 1.08996 * 109.46884 * 300.00571 * 19 18 17 38 38 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.46832 * 60.00321 * 20 19 18 40 40 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 42 42 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 43 43 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47045 * 60.00033 * 23 18 17 45 45 H 1.09001 * 109.47375 * 299.99958 * 23 18 17 46 46 H 1.07998 * 120.00210 * 179.72749 * 24 17 16 47 47 H 1.08003 * 119.99792 * 0.02562 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 16 2.6592 -6.3658 -0.0004 13 8 3.3004 -6.4414 -1.2662 14 6 1.6118 -7.7828 -0.0005 15 6 1.2015 -8.3388 -1.1977 16 6 0.3802 -9.4508 -1.1979 17 6 -0.0300 -10.0071 -0.0007 18 6 -0.9248 -11.2197 -0.0009 19 6 -0.2223 -12.3721 0.7199 20 6 -1.1311 -13.6030 0.7204 21 6 -2.4386 -13.2713 1.4423 22 6 -3.1411 -12.1190 0.7214 23 6 -2.2326 -10.8885 0.7207 24 6 0.3765 -9.4483 1.1964 25 6 1.2009 -8.3386 1.1965 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5566 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8904 31 1 0.8540 -5.0446 -0.8914 32 1 0.8533 -5.0451 0.8885 33 1 1.5225 -7.9045 -2.1330 34 1 0.0593 -9.8849 -2.1332 35 1 -1.1411 -11.5115 -1.0286 36 1 -0.0063 -12.0799 1.7476 37 1 0.7094 -12.6080 0.2059 38 1 -0.6308 -14.4238 1.2343 39 1 -1.3474 -13.8952 -0.3072 40 1 -3.0858 -14.1483 1.4429 41 1 -2.2223 -12.9790 2.4699 42 1 -3.3574 -12.4112 -0.3061 43 1 -4.0729 -11.8830 1.2355 44 1 -2.7331 -10.0675 0.2072 45 1 -2.0167 -10.5964 1.7485 46 1 0.0525 -9.8804 2.1317 47 1 1.5215 -7.9042 2.1319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524613105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:48 Heat of formation + Delta-G solvation = -81.291146 kcal Electronic energy + Delta-G solvation = -23560.706724 eV Core-core repulsion = 20217.984686 eV Total energy + Delta-G solvation = -3342.722038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82336 -38.69507 -36.87084 -36.30783 -34.02162 -33.71365 -31.95248 -31.62611 -29.79159 -29.35720 -25.43086 -24.60426 -23.77494 -23.43447 -22.24424 -21.80242 -20.40611 -19.08064 -18.50153 -17.69629 -16.74208 -16.60388 -16.42009 -16.09837 -15.75726 -15.66342 -15.17399 -15.08054 -14.81901 -14.43856 -14.32149 -14.25253 -14.11527 -13.79192 -13.70918 -13.11737 -13.07704 -13.03517 -12.76239 -12.71756 -12.50290 -12.44976 -12.30944 -12.01358 -11.83577 -11.81172 -11.59905 -11.31805 -11.29480 -11.09863 -11.03951 -10.78743 -10.57754 -9.95382 -9.91828 -9.29709 -8.21269 -6.33024 -0.09419 0.41037 0.95383 1.39634 1.40441 1.54137 1.82222 2.40583 2.64922 2.95754 3.11575 3.55235 3.72441 3.91487 3.96031 4.04508 4.07892 4.18834 4.22983 4.28778 4.39408 4.46477 4.55719 4.59966 4.61828 4.63449 4.64050 4.74372 4.86315 4.86925 4.96151 5.04829 5.15749 5.16926 5.19418 5.20033 5.24959 5.25925 5.32432 5.33362 5.42118 5.44767 5.49906 5.52322 5.66834 5.69334 5.82994 5.99844 6.22257 6.84380 7.36534 8.90620 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.002136 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.221376 B =13106.190399 C =13847.304073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.088 4.088 11 C -0.444 4.444 12 S 1.394 4.606 13 O -0.921 6.921 14 C -0.477 4.477 15 C -0.081 4.081 16 C -0.149 4.149 17 C -0.043 4.043 18 C -0.048 4.048 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.109 4.109 24 C -0.133 4.133 25 C -0.034 4.034 26 H 0.264 0.736 27 H -0.025 1.025 28 H 0.007 0.993 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.158 0.842 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -29.960 9.112 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.126 4.126 11 C -0.580 4.580 12 S 1.594 4.406 13 O -0.917 6.917 14 C -0.574 4.574 15 C -0.100 4.100 16 C -0.168 4.168 17 C -0.043 4.043 18 C -0.066 4.066 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.053 4.053 26 H 0.072 0.928 27 H -0.007 1.007 28 H 0.025 0.975 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.175 0.825 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.592 -29.834 9.078 31.225 hybrid contribution -1.486 1.135 -2.762 3.335 sum -3.077 -28.698 6.316 29.546 Atomic orbital electron populations 1.70110 1.07881 1.27739 1.51801 1.26037 0.95824 1.03560 0.94706 0.85365 0.79172 0.78527 0.77788 1.18357 1.20866 1.19805 1.21795 0.93797 0.92346 1.50394 0.91790 1.19025 0.94361 0.92939 0.94819 1.21137 0.97986 0.91945 1.01559 1.27828 1.12461 1.10585 1.07117 1.68516 0.84690 0.80989 1.06374 1.92941 1.66321 1.84698 1.47725 1.27717 1.15449 1.16404 0.97875 1.21094 0.95433 0.96104 0.97388 1.21260 0.99621 0.96945 0.98975 1.20330 0.95202 0.95797 0.92986 1.20264 0.93876 0.91711 1.00794 1.21575 0.97937 0.93988 1.00940 1.21536 0.95929 0.97223 1.00875 1.21544 0.96377 0.98111 0.99556 1.21526 0.98285 0.94931 1.00901 1.21579 0.94280 0.97904 1.00926 1.21492 0.98479 0.96719 0.98502 1.21402 0.92918 0.93885 0.97113 0.92769 1.00652 0.97477 0.88833 0.94832 0.92921 0.84498 0.88673 0.85637 0.90936 0.90637 0.92468 0.91013 0.92343 0.91445 0.91395 0.92360 0.91363 0.93035 0.90716 0.82481 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 8 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.65 5.16 30.60 0.16 -3.49 16 11 C -0.44 -14.89 5.88 71.98 0.42 -14.47 16 12 S 1.39 37.19 13.55 -56.49 -0.77 36.42 16 13 O -0.92 -37.15 16.90 -148.98 -2.52 -39.67 16 14 C -0.48 -11.89 5.61 22.27 0.12 -11.76 16 15 C -0.08 -2.38 9.44 22.27 0.21 -2.16 16 16 C -0.15 -3.58 9.67 22.27 0.22 -3.37 16 17 C -0.04 -0.80 4.78 -19.87 -0.09 -0.90 16 18 C -0.05 -0.68 2.36 -11.54 -0.03 -0.70 16 19 C -0.11 -1.21 5.02 30.60 0.15 -1.05 16 20 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 21 C -0.12 -1.03 5.92 30.59 0.18 -0.85 16 22 C -0.12 -1.25 5.92 30.58 0.18 -1.07 16 23 C -0.11 -1.39 5.01 30.58 0.15 -1.24 16 24 C -0.13 -2.11 8.71 22.27 0.19 -1.92 16 25 C -0.03 -0.58 9.75 22.27 0.22 -0.37 16 26 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 27 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 28 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.10 3.28 7.46 -2.91 -0.02 3.26 16 34 H 0.13 2.70 7.95 -2.91 -0.02 2.68 16 35 H 0.07 1.09 7.88 -2.39 -0.02 1.07 16 36 H 0.07 0.73 7.40 -2.39 -0.02 0.71 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.84 7.37 -2.39 -0.02 0.82 16 46 H 0.16 1.51 7.10 -2.91 -0.02 1.49 16 47 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -81.78 386.57 3.06 -78.72 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.91 Total: 9.22 kcal Atomic # 6 Polarization: -77.05 SS G_CDS: 3.12 Total: -73.93 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -2.52 Total: -39.67 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 37.19 SS G_CDS: -0.77 Total: 36.42 kcal Total: -81.78 3.06 -78.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524613105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.571 kcal (2) G-P(sol) polarization free energy of solvation -81.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds