Wall clock time and date at job start Tue Mar 31 2020 12:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00062 * 2 1 4 4 H 1.48505 * 109.46851 * 239.99920 * 3 2 1 5 5 H 1.48496 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46849 * 120.00467 * 3 2 1 7 7 C 1.37875 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47357 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47519 * 179.97438 * 11 10 9 13 13 O 1.42102 * 109.46966 * 70.94359 * 12 11 10 14 14 C 1.76195 * 103.00415 * 180.02562 * 12 11 10 15 15 C 1.38233 * 120.00186 * 89.99368 * 14 12 11 16 16 C 1.38234 * 120.00037 * 179.72636 * 15 14 12 17 17 C 1.38235 * 120.00220 * 0.28719 * 16 15 14 18 18 C 1.50700 * 120.00273 * 179.97438 * 17 16 15 19 19 C 1.53008 * 109.46857 * 239.99677 * 18 17 16 20 20 C 1.53000 * 109.46745 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47212 * 60.00189 * 20 19 18 22 22 C 1.52999 * 109.46896 * 299.99591 * 21 20 19 23 23 C 1.52999 * 109.47403 * 119.99681 * 18 17 16 24 24 C 1.38238 * 119.99712 * 359.97124 * 17 16 15 25 25 C 1.38234 * 120.00028 * 359.97438 * 24 17 16 26 26 H 0.97007 * 119.99741 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47523 * 59.99796 * 9 7 2 28 28 H 1.09003 * 109.46789 * 299.99404 * 9 7 2 29 29 H 1.09007 * 109.47344 * 59.99626 * 10 9 7 30 30 H 1.08998 * 109.47390 * 300.00010 * 10 9 7 31 31 H 1.09007 * 109.46905 * 59.99716 * 11 10 9 32 32 H 1.09007 * 109.47289 * 300.00288 * 11 10 9 33 33 H 1.08002 * 120.00157 * 0.02562 * 15 14 12 34 34 H 1.07999 * 120.00009 * 180.25939 * 16 15 14 35 35 H 1.09004 * 109.46945 * 359.97438 * 18 17 16 36 36 H 1.08997 * 109.46748 * 299.99887 * 19 18 17 37 37 H 1.08995 * 109.46922 * 59.99781 * 19 18 17 38 38 H 1.09004 * 109.47247 * 299.99633 * 20 19 18 39 39 H 1.09002 * 109.46543 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47098 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.47013 * 59.99857 * 21 20 19 42 42 H 1.08997 * 109.46853 * 299.99871 * 22 21 20 43 43 H 1.09003 * 109.47013 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46888 * 300.00031 * 23 18 17 45 45 H 1.08997 * 109.46809 * 59.99741 * 23 18 17 46 46 H 1.08002 * 119.99691 * 179.97438 * 24 17 16 47 47 H 1.07999 * 119.99968 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6588 -6.3659 -0.0025 13 8 3.2990 -6.4421 1.2639 14 6 1.6115 -7.7828 -0.0038 15 6 1.2010 -8.3378 -1.2015 16 6 0.3840 -9.4528 -1.2025 17 6 -0.0275 -10.0093 -0.0059 18 6 -0.9187 -11.2246 -0.0070 19 6 -2.2293 -10.8965 0.7112 20 6 -3.1343 -12.1301 0.7095 21 6 -2.4305 -13.2800 1.4327 22 6 -1.1200 -13.6081 0.7145 23 6 -0.2146 -12.3742 0.7165 24 6 0.3787 -9.4512 1.1918 25 6 1.1967 -8.3368 1.1928 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8918 28 1 0.6240 -2.5574 0.8881 29 1 2.8712 -3.6047 0.8890 30 1 2.8725 -3.6040 -0.8909 31 1 0.8538 -5.0447 -0.8923 32 1 0.8530 -5.0450 0.8877 33 1 1.5226 -7.9031 -2.1364 34 1 0.0667 -9.8889 -2.1382 35 1 -1.1316 -11.5180 -1.0350 36 1 -2.0165 -10.6028 1.7391 37 1 -2.7309 -10.0775 0.1958 38 1 -3.3470 -12.4233 -0.3186 39 1 -4.0678 -11.8964 1.2216 40 1 -3.0754 -14.1587 1.4319 41 1 -2.2179 -12.9868 2.4608 42 1 -1.3327 -13.9013 -0.3135 43 1 -0.6187 -14.4277 1.2295 44 1 0.7191 -12.6078 0.2049 45 1 -0.0019 -12.0804 1.7444 46 1 0.0569 -9.8857 2.1267 47 1 1.5136 -7.9005 2.1285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524613108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:52 Heat of formation + Delta-G solvation = -60.896199 kcal Electronic energy + Delta-G solvation = -23569.017825 eV Core-core repulsion = 20227.180177 eV Total energy + Delta-G solvation = -3341.837647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07212 -38.01391 -35.44811 -34.39666 -33.00676 -31.99276 -31.10999 -31.06250 -29.03239 -27.45045 -24.00248 -23.32994 -22.92292 -22.90042 -21.26355 -20.29109 -19.82662 -17.99116 -16.74434 -16.27269 -15.86315 -15.65603 -14.97615 -14.64183 -14.55807 -14.55413 -14.40389 -14.28290 -14.15950 -13.57823 -13.39979 -13.11001 -12.56237 -12.49578 -12.35317 -12.32700 -11.94849 -11.89074 -11.64603 -11.51309 -11.33139 -11.17283 -10.83244 -10.78596 -10.73842 -10.68873 -10.53324 -10.46019 -10.09436 -9.76730 -9.31393 -9.11567 -9.02993 -8.98199 -8.34237 -8.02123 -5.99159 -4.01954 0.87331 1.30384 2.05990 2.94921 3.34561 3.38640 3.41516 3.58245 4.13415 4.20614 4.32668 4.44135 4.46979 4.66700 4.81823 4.87747 4.90904 4.93484 5.12426 5.14174 5.16064 5.25360 5.29711 5.36239 5.37968 5.48540 5.57357 5.66151 5.67561 5.72477 5.74599 5.75563 5.77047 5.86461 5.93635 5.96440 6.06418 6.19623 6.24146 6.26724 6.44438 6.54343 6.73777 6.85303 7.06665 7.67418 7.80580 8.00356 8.41897 9.04917 9.62069 11.12007 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.002130 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.885924 B =13140.722968 C =13793.969089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.436 4.436 12 S 1.308 4.692 13 O -0.859 6.859 14 C -0.457 4.457 15 C -0.043 4.043 16 C -0.137 4.137 17 C -0.049 4.049 18 C -0.049 4.049 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.052 4.052 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.120 0.880 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -28.542 -4.339 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.574 4.574 12 S 1.508 4.492 13 O -0.855 6.855 14 C -0.552 4.552 15 C -0.062 4.062 16 C -0.156 4.156 17 C -0.049 4.049 18 C -0.068 4.068 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.070 4.070 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.138 0.862 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.015 -28.436 -4.307 28.830 hybrid contribution -1.228 0.855 1.854 2.383 sum -3.243 -27.580 -2.453 27.879 Atomic orbital electron populations 1.69961 1.06085 1.26713 1.50794 1.25036 0.94868 0.99301 0.95308 0.86639 0.79567 0.83022 0.78673 1.20119 1.21316 1.20253 1.21245 0.93110 0.91052 1.50708 0.92564 1.19081 0.93814 0.90868 0.97342 1.21317 0.98973 0.91987 1.00945 1.27765 1.11835 1.10623 1.07217 1.69332 0.87372 0.82908 1.09578 1.93073 1.63949 1.83662 1.44776 1.27942 1.13882 1.16468 0.96935 1.20860 0.94298 0.94289 0.96730 1.21145 0.99681 0.97343 0.97418 1.20008 0.95917 0.95609 0.93356 1.20237 0.93823 0.92174 1.00540 1.21611 0.94714 0.97772 1.00894 1.21540 0.98219 0.95107 1.00807 1.21555 0.96556 0.98223 0.99543 1.21545 0.95863 0.97420 1.00817 1.21611 0.98217 0.94219 1.00828 1.21033 0.99382 0.96967 0.97681 1.21140 0.93542 0.94545 0.97823 0.92954 0.96276 0.96786 0.92937 0.92061 0.87125 0.90053 0.84592 0.85732 0.90268 0.91699 0.91658 0.91926 0.91892 0.92111 0.92012 0.91940 0.91962 0.91775 0.91713 0.86243 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.58 16 10 C -0.09 -1.91 5.16 -26.73 -0.14 -2.05 16 11 C -0.44 -7.24 5.88 37.16 0.22 -7.03 16 12 S 1.31 17.75 13.54 -107.50 -1.46 16.29 16 13 O -0.86 -16.79 16.91 -35.23 -0.60 -17.38 16 14 C -0.46 -5.88 5.61 -39.58 -0.22 -6.10 16 15 C -0.04 -0.43 9.75 -39.58 -0.39 -0.82 16 16 C -0.14 -1.33 9.67 -39.58 -0.38 -1.71 16 17 C -0.05 -0.50 4.78 -104.62 -0.50 -1.00 16 18 C -0.05 -0.39 2.36 -91.77 -0.22 -0.61 16 19 C -0.11 -0.88 5.02 -26.73 -0.13 -1.01 16 20 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 21 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 22 C -0.12 -0.73 5.92 -26.71 -0.16 -0.89 16 23 C -0.11 -0.82 5.02 -26.71 -0.13 -0.95 16 24 C -0.13 -1.55 8.71 -39.58 -0.34 -1.89 16 25 C -0.05 -0.73 9.44 -39.58 -0.37 -1.10 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 32 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.90 7.95 -52.49 -0.42 0.48 16 35 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 36 H 0.06 0.54 7.39 -51.93 -0.38 0.16 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 46 H 0.12 1.24 7.10 -52.49 -0.37 0.86 16 47 H 0.13 1.95 7.46 -52.49 -0.39 1.55 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -36.06 386.59 -12.39 -48.45 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -8.24 Total: -3.33 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: -3.64 Total: -40.17 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.60 Total: -17.38 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 17.75 SS G_CDS: -1.46 Total: 16.29 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.06 -12.39 -48.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524613108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.450 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds