Wall clock time and date at job start Tue Mar 31 2020 12:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00062 * 2 1 4 4 H 1.48505 * 109.46851 * 239.99920 * 3 2 1 5 5 H 1.48496 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46849 * 120.00467 * 3 2 1 7 7 C 1.37875 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47357 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47519 * 179.97438 * 11 10 9 13 13 O 1.42102 * 109.46966 * 70.94359 * 12 11 10 14 14 C 1.76195 * 103.00415 * 180.02562 * 12 11 10 15 15 C 1.38233 * 120.00186 * 89.99368 * 14 12 11 16 16 C 1.38234 * 120.00037 * 179.72636 * 15 14 12 17 17 C 1.38235 * 120.00220 * 0.28719 * 16 15 14 18 18 C 1.50700 * 120.00273 * 179.97438 * 17 16 15 19 19 C 1.53008 * 109.46857 * 239.99677 * 18 17 16 20 20 C 1.53000 * 109.46745 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47212 * 60.00189 * 20 19 18 22 22 C 1.52999 * 109.46896 * 299.99591 * 21 20 19 23 23 C 1.52999 * 109.47403 * 119.99681 * 18 17 16 24 24 C 1.38238 * 119.99712 * 359.97124 * 17 16 15 25 25 C 1.38234 * 120.00028 * 359.97438 * 24 17 16 26 26 H 0.97007 * 119.99741 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47523 * 59.99796 * 9 7 2 28 28 H 1.09003 * 109.46789 * 299.99404 * 9 7 2 29 29 H 1.09007 * 109.47344 * 59.99626 * 10 9 7 30 30 H 1.08998 * 109.47390 * 300.00010 * 10 9 7 31 31 H 1.09007 * 109.46905 * 59.99716 * 11 10 9 32 32 H 1.09007 * 109.47289 * 300.00288 * 11 10 9 33 33 H 1.08002 * 120.00157 * 0.02562 * 15 14 12 34 34 H 1.07999 * 120.00009 * 180.25939 * 16 15 14 35 35 H 1.09004 * 109.46945 * 359.97438 * 18 17 16 36 36 H 1.08997 * 109.46748 * 299.99887 * 19 18 17 37 37 H 1.08995 * 109.46922 * 59.99781 * 19 18 17 38 38 H 1.09004 * 109.47247 * 299.99633 * 20 19 18 39 39 H 1.09002 * 109.46543 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47098 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.47013 * 59.99857 * 21 20 19 42 42 H 1.08997 * 109.46853 * 299.99871 * 22 21 20 43 43 H 1.09003 * 109.47013 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46888 * 300.00031 * 23 18 17 45 45 H 1.08997 * 109.46809 * 59.99741 * 23 18 17 46 46 H 1.08002 * 119.99691 * 179.97438 * 24 17 16 47 47 H 1.07999 * 119.99968 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6588 -6.3659 -0.0025 13 8 3.2990 -6.4421 1.2639 14 6 1.6115 -7.7828 -0.0038 15 6 1.2010 -8.3378 -1.2015 16 6 0.3840 -9.4528 -1.2025 17 6 -0.0275 -10.0093 -0.0059 18 6 -0.9187 -11.2246 -0.0070 19 6 -2.2293 -10.8965 0.7112 20 6 -3.1343 -12.1301 0.7095 21 6 -2.4305 -13.2800 1.4327 22 6 -1.1200 -13.6081 0.7145 23 6 -0.2146 -12.3742 0.7165 24 6 0.3787 -9.4512 1.1918 25 6 1.1967 -8.3368 1.1928 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8918 28 1 0.6240 -2.5574 0.8881 29 1 2.8712 -3.6047 0.8890 30 1 2.8725 -3.6040 -0.8909 31 1 0.8538 -5.0447 -0.8923 32 1 0.8530 -5.0450 0.8877 33 1 1.5226 -7.9031 -2.1364 34 1 0.0667 -9.8889 -2.1382 35 1 -1.1316 -11.5180 -1.0350 36 1 -2.0165 -10.6028 1.7391 37 1 -2.7309 -10.0775 0.1958 38 1 -3.3470 -12.4233 -0.3186 39 1 -4.0678 -11.8964 1.2216 40 1 -3.0754 -14.1587 1.4319 41 1 -2.2179 -12.9868 2.4608 42 1 -1.3327 -13.9013 -0.3135 43 1 -0.6187 -14.4277 1.2295 44 1 0.7191 -12.6078 0.2049 45 1 -0.0019 -12.0804 1.7444 46 1 0.0569 -9.8857 2.1267 47 1 1.5136 -7.9005 2.1285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524613108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:51 Heat of formation + Delta-G solvation = -81.191587 kcal Electronic energy + Delta-G solvation = -23569.897899 eV Core-core repulsion = 20227.180177 eV Total energy + Delta-G solvation = -3342.717721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82556 -38.70383 -36.87065 -36.30721 -34.02021 -33.72188 -31.94325 -31.65436 -29.80724 -29.35685 -25.43125 -24.62010 -23.76878 -23.46610 -22.25071 -21.80913 -20.42864 -19.07679 -18.49529 -17.68865 -16.74622 -16.58304 -16.48753 -16.04422 -15.78280 -15.64881 -15.20769 -15.11442 -14.87310 -14.44035 -14.36768 -14.16760 -14.01298 -13.87393 -13.72591 -13.13678 -13.10559 -13.05485 -12.77328 -12.67429 -12.51218 -12.44071 -12.32813 -12.05516 -11.86891 -11.80274 -11.59362 -11.35468 -11.32197 -11.12100 -11.05984 -10.78879 -10.56340 -9.94803 -9.91473 -9.29946 -8.20808 -6.32773 -0.09183 0.41716 0.95434 1.39832 1.43546 1.51335 1.82253 2.40855 2.65169 2.95900 3.11830 3.57569 3.68860 3.89006 3.93537 4.05065 4.08240 4.18593 4.20886 4.29368 4.35850 4.44744 4.55947 4.59654 4.59823 4.61138 4.61689 4.71202 4.85326 4.86532 4.93894 5.07377 5.13486 5.15493 5.16992 5.19909 5.22602 5.22866 5.29151 5.33581 5.40298 5.41403 5.49464 5.50036 5.66243 5.69267 5.82884 6.00436 6.22273 6.84132 7.36638 8.90651 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.002130 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.885924 B =13140.722968 C =13793.969089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.088 4.088 11 C -0.444 4.444 12 S 1.394 4.606 13 O -0.921 6.921 14 C -0.477 4.477 15 C -0.034 4.034 16 C -0.136 4.136 17 C -0.045 4.045 18 C -0.045 4.045 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.110 4.110 24 C -0.141 4.141 25 C -0.083 4.083 26 H 0.264 0.736 27 H 0.007 0.993 28 H -0.025 1.025 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.051 0.949 33 H 0.181 0.819 34 H 0.161 0.839 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.123 0.877 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -30.104 -7.082 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.126 4.126 11 C -0.580 4.580 12 S 1.594 4.406 13 O -0.917 6.917 14 C -0.575 4.575 15 C -0.053 4.053 16 C -0.155 4.155 17 C -0.045 4.045 18 C -0.063 4.063 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.161 4.161 25 C -0.102 4.102 26 H 0.072 0.928 27 H 0.025 0.975 28 H -0.007 1.007 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.198 0.802 34 H 0.179 0.821 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.141 0.859 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.695 -29.974 -7.045 30.837 hybrid contribution -1.425 1.184 2.708 3.281 sum -3.120 -28.790 -4.336 29.281 Atomic orbital electron populations 1.70103 1.07885 1.27865 1.51644 1.26040 0.95826 1.03557 0.94669 0.85470 0.78254 0.77828 0.79327 1.18300 1.20844 1.19729 1.21737 0.93789 0.92354 1.50654 0.91785 1.19012 0.94350 0.92926 0.94794 1.21139 0.97989 0.91946 1.01548 1.27831 1.12460 1.10601 1.07106 1.68510 0.84729 0.80994 1.06354 1.92942 1.66373 1.84701 1.47692 1.27717 1.15392 1.16459 0.97902 1.21408 0.92928 0.93899 0.97085 1.21635 0.98598 0.96775 0.98501 1.20363 0.95284 0.95915 0.92975 1.20280 0.93184 0.91244 1.01620 1.21600 0.95048 0.98335 1.00063 1.21522 0.97891 0.94476 1.01473 1.21564 0.96815 0.98467 0.99072 1.21527 0.95454 0.96824 1.01476 1.21595 0.98543 0.94612 1.00051 1.21112 0.99336 0.96612 0.98999 1.21091 0.95567 0.96207 0.97338 0.92765 0.97488 1.00696 0.94846 0.88827 0.84500 0.92945 0.80161 0.82125 0.88435 0.93002 0.92271 0.90935 0.91824 0.91069 0.92827 0.90927 0.91484 0.91707 0.92935 0.85946 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.09 -3.66 5.16 30.59 0.16 -3.50 16 11 C -0.44 -14.94 5.88 71.98 0.42 -14.51 16 12 S 1.39 37.31 13.54 -56.49 -0.77 36.55 16 13 O -0.92 -37.27 16.91 -148.98 -2.52 -39.79 16 14 C -0.48 -11.92 5.61 22.27 0.12 -11.80 16 15 C -0.03 -0.58 9.75 22.27 0.22 -0.37 16 16 C -0.14 -2.14 9.67 22.27 0.22 -1.93 16 17 C -0.05 -0.84 4.78 -19.87 -0.09 -0.93 16 18 C -0.04 -0.61 2.36 -11.54 -0.03 -0.64 16 19 C -0.11 -1.63 5.02 30.60 0.15 -1.48 16 20 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 21 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 22 C -0.12 -1.16 5.92 30.61 0.18 -0.98 16 23 C -0.11 -1.44 5.02 30.61 0.15 -1.28 16 24 C -0.14 -3.38 8.71 22.27 0.19 -3.19 16 25 C -0.08 -2.43 9.44 22.27 0.21 -2.22 16 26 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 27 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 28 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 29 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.16 1.42 7.95 -2.91 -0.02 1.39 16 35 H 0.10 1.02 7.88 -2.39 -0.02 1.00 16 36 H 0.05 0.87 7.39 -2.39 -0.02 0.85 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 0.81 7.39 -2.39 -0.02 0.79 16 46 H 0.12 2.70 7.10 -2.91 -0.02 2.68 16 47 H 0.09 3.25 7.46 -2.91 -0.02 3.23 16 Total: -1.00 -81.95 386.59 3.06 -78.90 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.91 Total: 9.96 kcal Atomic # 6 Polarization: -77.88 SS G_CDS: 3.12 Total: -74.77 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.28 Total: -57.75 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.52 Total: -39.79 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 37.31 SS G_CDS: -0.77 Total: 36.55 kcal Total: -81.95 3.06 -78.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524613108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.294 kcal (2) G-P(sol) polarization free energy of solvation -81.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds