Wall clock time and date at job start Tue Mar 31 2020 13:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39694 * 125.77138 * 2 1 4 4 C 1.36216 * 107.86089 * 180.13945 * 3 2 1 5 5 N 1.39198 * 126.27152 * 179.90328 * 4 3 2 6 6 C 1.34769 * 120.00041 * 359.69373 * 5 4 3 7 7 O 1.21393 * 120.00259 * 359.97438 * 6 5 4 8 8 C 1.49310 * 120.00238 * 180.02562 * 6 5 4 9 9 O 1.21373 * 119.99490 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00416 * 180.27495 * 8 6 5 11 11 C 1.47065 * 136.05555 * 359.71686 * 10 8 6 12 12 C 1.53495 * 87.98606 * 207.08852 * 11 10 8 13 13 C 1.47067 * 136.05737 * 179.35754 * 10 8 6 14 14 C 1.53004 * 113.46530 * 267.68806 * 13 10 8 15 15 C 1.52998 * 113.47292 * 38.12653 * 13 10 8 16 16 N 1.35860 * 107.45444 * 359.64141 * 4 3 2 17 17 C 1.46493 * 126.09780 * 180.19175 * 16 4 3 18 18 C 1.50697 * 109.47452 * 89.99917 * 17 16 4 19 19 H 1.07998 * 119.99489 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00247 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99842 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47090 * 90.00200 * 22 20 18 24 24 H 1.48505 * 109.47175 * 209.99881 * 22 20 18 25 25 H 1.48502 * 109.47239 * 330.00104 * 22 20 18 26 26 N 1.30846 * 125.77172 * 179.73445 * 2 1 3 27 27 H 1.08999 * 109.47529 * 270.23484 * 1 2 3 28 28 H 1.08999 * 109.47378 * 30.23852 * 1 2 3 29 29 H 1.09004 * 109.47133 * 150.23514 * 1 2 3 30 30 H 1.08002 * 126.07130 * 0.03654 * 3 2 1 31 31 H 0.97001 * 119.99606 * 179.68588 * 5 4 3 32 32 H 1.08997 * 113.47105 * 321.86978 * 11 10 8 33 33 H 1.09000 * 113.47061 * 92.31228 * 11 10 8 34 34 H 1.08999 * 114.20869 * 87.52218 * 12 11 10 35 35 H 1.08998 * 114.20882 * 220.14591 * 12 11 10 36 36 H 1.08994 * 109.47096 * 79.50365 * 14 13 10 37 37 H 1.08999 * 109.47186 * 199.50796 * 14 13 10 38 38 H 1.09005 * 109.47127 * 319.50549 * 14 13 10 39 39 H 1.09002 * 109.46455 * 40.49648 * 15 13 10 40 40 H 1.08992 * 109.47404 * 160.49332 * 15 13 10 41 41 H 1.09001 * 109.46933 * 280.50267 * 15 13 10 42 42 H 1.09003 * 109.47006 * 210.00321 * 17 16 4 43 43 H 1.09006 * 109.47259 * 329.99528 * 17 16 4 44 44 H 0.96998 * 120.00077 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7145 -0.0032 5 7 4.7484 1.5291 -0.0061 6 6 4.6118 2.8698 -0.0123 7 8 3.5044 3.3672 -0.0157 8 6 5.8225 3.7437 -0.0160 9 8 6.9297 3.2464 -0.0131 10 7 5.6859 5.0845 -0.0166 11 6 4.5633 6.0345 -0.0193 12 6 5.4883 7.0420 -0.7159 13 6 6.5939 6.2414 -0.0083 14 6 6.9135 6.7549 1.3971 15 6 7.8459 6.0396 -0.8642 16 7 3.6089 -0.6440 0.0030 17 6 4.7857 -1.5165 0.0064 18 6 5.1901 -1.8092 1.4283 19 1 4.6270 -1.3871 2.2475 20 6 6.2788 -2.6158 1.6833 21 7 6.9647 -3.1293 0.6856 22 14 6.7805 -2.9780 3.4458 23 1 6.0790 -4.1983 3.9192 24 1 8.2482 -3.1952 3.5080 25 1 6.4130 -1.8286 4.3112 26 7 2.2719 -1.0616 0.0049 27 1 -0.3634 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5102 30 1 1.9870 2.1596 0.0006 31 1 5.6333 1.1317 -0.0036 32 1 3.7253 5.7145 -0.6385 33 1 4.2557 6.3459 0.9789 34 1 5.4995 6.9613 -1.8028 35 1 5.3806 8.0671 -0.3612 36 1 7.6742 6.1203 1.8516 37 1 7.2839 7.7781 1.3345 38 1 6.0100 6.7323 2.0065 39 1 7.5752 5.5313 -1.7896 40 1 8.2867 7.0087 -1.0974 41 1 8.5677 5.4347 -0.3152 42 1 4.5472 -2.4501 -0.5031 43 1 5.6074 -1.0203 -0.5103 44 1 7.7309 -3.6965 0.8649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525898603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:11 Heat of formation + Delta-G solvation = 50.555684 kcal Electronic energy + Delta-G solvation = -27197.405894 eV Core-core repulsion = 23346.400700 eV Total energy + Delta-G solvation = -3851.005194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37163 -40.70534 -39.26531 -37.81892 -34.88390 -33.78840 -32.09048 -31.94988 -29.81214 -29.23429 -28.45713 -27.79125 -26.05347 -25.04517 -23.30490 -22.88243 -21.77862 -20.04927 -19.66163 -18.32162 -17.41309 -16.85737 -16.67996 -16.31422 -16.18848 -15.57123 -15.35803 -14.85456 -14.47932 -14.38545 -14.07421 -13.87209 -13.52792 -12.98505 -12.87861 -12.78484 -12.74295 -12.54845 -12.42486 -12.14062 -12.06528 -11.91035 -11.85291 -11.63355 -11.58547 -11.36125 -11.05418 -10.85661 -10.59801 -10.51075 -10.31120 -9.81884 -9.78891 -9.39606 -9.02719 -8.68304 -7.96056 -7.54732 -6.29815 -4.38380 1.29532 1.96482 2.64275 3.07410 3.20727 3.25176 3.27091 3.31780 3.57544 3.69748 3.94912 4.26793 4.32147 4.50938 4.61294 4.61656 4.93825 5.03706 5.08599 5.29232 5.29757 5.30611 5.45587 5.50494 5.55410 5.57093 5.68341 5.69964 5.91739 6.00249 6.04379 6.07710 6.09857 6.16235 6.31131 6.54838 6.83830 7.02049 7.28794 7.36510 7.47284 7.54276 7.65321 7.81925 7.88447 8.11841 8.57670 8.70231 9.29173 10.77676 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.004079 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.061650 B = 6863.473706 C = 8789.889829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.288 4.288 4 C 0.295 3.705 5 N -0.609 5.609 6 C 0.515 3.485 7 O -0.495 6.495 8 C 0.542 3.458 9 O -0.508 6.508 10 N -0.616 5.616 11 C 0.104 3.896 12 C -0.149 4.149 13 C 0.157 3.843 14 C -0.151 4.151 15 C -0.149 4.149 16 N -0.341 5.341 17 C 0.255 3.745 18 C -0.542 4.542 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.907 3.093 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.278 5.278 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.162 0.838 31 H 0.428 0.572 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 21.922 -2.822 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.320 4.320 4 C 0.073 3.927 5 N -0.257 5.257 6 C 0.296 3.704 7 O -0.368 6.368 8 C 0.326 3.674 9 O -0.382 6.382 10 N -0.353 5.353 11 C -0.018 4.018 12 C -0.187 4.187 13 C 0.073 3.927 14 C -0.209 4.209 15 C -0.207 4.207 16 N -0.127 5.127 17 C 0.138 3.862 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.104 5.104 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.267 0.733 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.765 20.289 -2.875 20.677 hybrid contribution 1.012 0.123 1.077 1.483 sum -1.753 20.412 -1.798 20.566 Atomic orbital electron populations 1.20026 0.87442 1.02400 1.02214 1.22012 0.96585 0.90897 1.02017 1.21265 0.88900 1.00504 1.21307 1.17977 0.87536 0.83483 1.03733 1.42313 1.09501 1.04819 1.69037 1.19857 0.89612 0.82256 0.78661 1.90665 1.25938 1.73803 1.46424 1.19356 0.88876 0.81169 0.78033 1.90823 1.26415 1.72974 1.48026 1.49591 1.12282 1.02359 1.71033 1.23061 0.91752 0.85625 1.01398 1.23617 0.95460 0.98574 1.01080 1.22181 0.92423 0.81910 0.96169 1.21994 1.02813 1.01710 0.94398 1.21935 0.96575 1.02276 0.99914 1.49583 1.06567 1.01921 1.54607 1.19689 0.77744 0.89724 0.99091 1.21313 1.13562 1.31984 0.91214 0.91698 1.24928 0.95577 0.94853 0.98246 1.69912 1.19160 1.32374 1.31148 0.86339 0.77696 0.78981 0.83597 1.20197 1.20787 1.19701 1.77357 0.86105 1.21816 1.25099 0.91258 0.91108 0.91474 0.82048 0.73337 0.88842 0.89278 0.88418 0.88829 0.91436 0.90484 0.91564 0.91825 0.91110 0.91319 0.92351 0.93633 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.99 7.20 -82.47 -0.59 0.40 16 3 C -0.29 -5.83 9.58 -39.77 -0.38 -6.21 16 4 C 0.29 6.40 7.68 -152.85 -1.17 5.23 16 5 N -0.61 -11.83 5.40 -11.80 -0.06 -11.90 16 6 C 0.52 8.92 7.85 -11.65 -0.09 8.83 16 7 O -0.50 -8.59 12.33 5.46 0.07 -8.52 16 8 C 0.54 8.54 8.04 -11.65 -0.09 8.45 16 9 O -0.51 -9.18 16.68 5.48 0.09 -9.09 16 10 N -0.62 -7.42 3.37 -170.33 -0.57 -8.00 16 11 C 0.10 0.91 7.24 -8.50 -0.06 0.85 16 12 C -0.15 -0.94 7.63 -26.08 -0.20 -1.14 16 13 C 0.16 1.39 1.60 -136.14 -0.22 1.18 16 14 C -0.15 -1.13 9.27 37.16 0.34 -0.78 16 15 C -0.15 -1.36 8.73 37.16 0.32 -1.04 16 16 N -0.34 -8.19 3.62 -61.47 -0.22 -8.42 16 17 C 0.26 6.61 6.02 -5.20 -0.03 6.57 16 18 C -0.54 -15.09 9.39 -34.44 -0.32 -15.41 16 19 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 20 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 21 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 22 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 N -0.28 -6.51 12.56 33.64 0.42 -6.09 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.16 3.07 5.83 -52.49 -0.31 2.76 16 31 H 0.43 8.41 7.46 -40.82 -0.30 8.11 16 32 H 0.09 0.89 7.39 -51.93 -0.38 0.50 16 33 H 0.09 0.67 7.28 -51.93 -0.38 0.29 16 34 H 0.10 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.48 7.02 -51.93 -0.36 0.12 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.05 1.17 7.53 -51.93 -0.39 0.78 16 44 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -32.63 372.35 -7.49 -40.12 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.32 Total: 6.09 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -2.22 Total: 8.17 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.30 Total: -58.80 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.16 Total: -17.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.63 -7.49 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525898603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.676 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds