Wall clock time and date at job start Tue Mar 31 2020 13:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39694 * 125.77138 * 2 1 4 4 C 1.36216 * 107.86089 * 180.13945 * 3 2 1 5 5 N 1.39198 * 126.27152 * 179.90328 * 4 3 2 6 6 C 1.34769 * 120.00041 * 359.69373 * 5 4 3 7 7 O 1.21393 * 120.00259 * 359.97438 * 6 5 4 8 8 C 1.49310 * 120.00238 * 180.02562 * 6 5 4 9 9 O 1.21373 * 119.99490 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00416 * 180.27495 * 8 6 5 11 11 C 1.47065 * 136.05555 * 359.71686 * 10 8 6 12 12 C 1.53495 * 87.98606 * 207.08852 * 11 10 8 13 13 C 1.47067 * 136.05737 * 179.35754 * 10 8 6 14 14 C 1.53004 * 113.46530 * 267.68806 * 13 10 8 15 15 C 1.52998 * 113.47292 * 38.12653 * 13 10 8 16 16 N 1.35860 * 107.45444 * 359.64141 * 4 3 2 17 17 C 1.46493 * 126.09780 * 180.19175 * 16 4 3 18 18 C 1.50697 * 109.47452 * 89.99917 * 17 16 4 19 19 H 1.07998 * 119.99489 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00247 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99842 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47090 * 90.00200 * 22 20 18 24 24 H 1.48505 * 109.47175 * 209.99881 * 22 20 18 25 25 H 1.48502 * 109.47239 * 330.00104 * 22 20 18 26 26 N 1.30846 * 125.77172 * 179.73445 * 2 1 3 27 27 H 1.08999 * 109.47529 * 270.23484 * 1 2 3 28 28 H 1.08999 * 109.47378 * 30.23852 * 1 2 3 29 29 H 1.09004 * 109.47133 * 150.23514 * 1 2 3 30 30 H 1.08002 * 126.07130 * 0.03654 * 3 2 1 31 31 H 0.97001 * 119.99606 * 179.68588 * 5 4 3 32 32 H 1.08997 * 113.47105 * 321.86978 * 11 10 8 33 33 H 1.09000 * 113.47061 * 92.31228 * 11 10 8 34 34 H 1.08999 * 114.20869 * 87.52218 * 12 11 10 35 35 H 1.08998 * 114.20882 * 220.14591 * 12 11 10 36 36 H 1.08994 * 109.47096 * 79.50365 * 14 13 10 37 37 H 1.08999 * 109.47186 * 199.50796 * 14 13 10 38 38 H 1.09005 * 109.47127 * 319.50549 * 14 13 10 39 39 H 1.09002 * 109.46455 * 40.49648 * 15 13 10 40 40 H 1.08992 * 109.47404 * 160.49332 * 15 13 10 41 41 H 1.09001 * 109.46933 * 280.50267 * 15 13 10 42 42 H 1.09003 * 109.47006 * 210.00321 * 17 16 4 43 43 H 1.09006 * 109.47259 * 329.99528 * 17 16 4 44 44 H 0.96998 * 120.00077 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7145 -0.0032 5 7 4.7484 1.5291 -0.0061 6 6 4.6118 2.8698 -0.0123 7 8 3.5044 3.3672 -0.0157 8 6 5.8225 3.7437 -0.0160 9 8 6.9297 3.2464 -0.0131 10 7 5.6859 5.0845 -0.0166 11 6 4.5633 6.0345 -0.0193 12 6 5.4883 7.0420 -0.7159 13 6 6.5939 6.2414 -0.0083 14 6 6.9135 6.7549 1.3971 15 6 7.8459 6.0396 -0.8642 16 7 3.6089 -0.6440 0.0030 17 6 4.7857 -1.5165 0.0064 18 6 5.1901 -1.8092 1.4283 19 1 4.6270 -1.3871 2.2475 20 6 6.2788 -2.6158 1.6833 21 7 6.9647 -3.1293 0.6856 22 14 6.7805 -2.9780 3.4458 23 1 6.0790 -4.1983 3.9192 24 1 8.2482 -3.1952 3.5080 25 1 6.4130 -1.8286 4.3112 26 7 2.2719 -1.0616 0.0049 27 1 -0.3634 0.0042 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5102 30 1 1.9870 2.1596 0.0006 31 1 5.6333 1.1317 -0.0036 32 1 3.7253 5.7145 -0.6385 33 1 4.2557 6.3459 0.9789 34 1 5.4995 6.9613 -1.8028 35 1 5.3806 8.0671 -0.3612 36 1 7.6742 6.1203 1.8516 37 1 7.2839 7.7781 1.3345 38 1 6.0100 6.7323 2.0065 39 1 7.5752 5.5313 -1.7896 40 1 8.2867 7.0087 -1.0974 41 1 8.5677 5.4347 -0.3152 42 1 4.5472 -2.4501 -0.5031 43 1 5.6074 -1.0203 -0.5103 44 1 7.7309 -3.6965 0.8649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525898603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:10 Heat of formation + Delta-G solvation = 28.955189 kcal Electronic energy + Delta-G solvation = -27198.342562 eV Core-core repulsion = 23346.400700 eV Total energy + Delta-G solvation = -3851.941862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69329 -41.96368 -40.56362 -39.06243 -36.43954 -35.72895 -33.89451 -32.81289 -30.92554 -30.62567 -30.05091 -28.43079 -27.85706 -26.33822 -24.78179 -23.99056 -23.03580 -21.52132 -21.16182 -19.58755 -18.92617 -18.60716 -18.18475 -17.59586 -17.33048 -16.81100 -16.56169 -16.40976 -15.93500 -15.80272 -15.43413 -14.94060 -14.66337 -14.55989 -14.45916 -14.09992 -13.72348 -13.61654 -13.46436 -13.31605 -13.15822 -13.08621 -12.97343 -12.92670 -12.76540 -12.66616 -12.55275 -12.34245 -12.19085 -12.09772 -11.76493 -11.42662 -11.30758 -10.80795 -10.70586 -9.96853 -9.71582 -9.21257 -8.41123 -6.59078 -0.06150 0.71489 1.05648 1.32959 1.33308 1.44502 1.68476 1.80510 2.08752 2.21009 2.31126 2.89454 2.96006 3.32788 3.76243 3.85535 3.92355 3.93727 4.11077 4.22578 4.44881 4.46187 4.62750 4.63763 4.70838 4.73330 4.78532 4.81850 4.86238 4.88537 4.91099 4.95071 5.06960 5.12550 5.14474 5.18696 5.22286 5.39631 5.45292 5.70760 5.84085 5.91375 5.99264 6.31680 6.36598 6.54071 6.72553 6.92576 7.12868 8.65924 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.004079 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.061650 B = 6863.473706 C = 8789.889829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.061 3.939 3 C -0.290 4.290 4 C 0.287 3.713 5 N -0.617 5.617 6 C 0.517 3.483 7 O -0.494 6.494 8 C 0.538 3.462 9 O -0.545 6.545 10 N -0.615 5.615 11 C 0.094 3.906 12 C -0.122 4.122 13 C 0.144 3.856 14 C -0.148 4.148 15 C -0.148 4.148 16 N -0.367 5.367 17 C 0.272 3.728 18 C -0.559 4.559 19 H 0.049 0.951 20 C 0.025 3.975 21 N -0.914 5.914 22 Si 0.971 3.029 23 H -0.269 1.269 24 H -0.270 1.270 25 H -0.273 1.273 26 N -0.322 5.322 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.178 0.822 31 H 0.423 0.577 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.045 0.955 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 25.031 -2.040 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C -0.322 4.322 4 C 0.066 3.934 5 N -0.265 5.265 6 C 0.299 3.701 7 O -0.367 6.367 8 C 0.321 3.679 9 O -0.423 6.423 10 N -0.351 5.351 11 C -0.028 4.028 12 C -0.160 4.160 13 C 0.062 3.938 14 C -0.205 4.205 15 C -0.205 4.205 16 N -0.153 5.153 17 C 0.153 3.847 18 C -0.597 4.597 19 H 0.067 0.933 20 C -0.177 4.177 21 N -0.552 5.552 22 Si 0.795 3.205 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.197 1.197 26 N -0.147 5.147 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.195 0.805 31 H 0.261 0.739 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.151 0.849 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.774 23.476 -2.105 23.870 hybrid contribution 1.232 -0.672 0.781 1.606 sum -2.542 22.804 -1.325 22.983 Atomic orbital electron populations 1.20260 0.83369 1.04320 1.03920 1.22937 0.98924 0.89733 0.98835 1.21537 0.88259 1.01265 1.21100 1.18404 0.88897 0.82950 1.03160 1.42482 1.08719 1.05529 1.69793 1.20320 0.90486 0.81617 0.77708 1.90626 1.26201 1.73637 1.46191 1.19078 0.87558 0.82472 0.78797 1.90802 1.27058 1.73928 1.50508 1.49993 1.15227 1.01598 1.68238 1.23419 0.91252 0.85261 1.02818 1.23594 0.91866 0.99525 1.01003 1.22657 0.92755 0.80753 0.97615 1.22012 1.02497 1.03005 0.93022 1.21936 0.96424 1.03385 0.98802 1.49352 1.06440 1.02568 1.56945 1.19210 0.78556 0.88987 0.97903 1.21415 1.14051 1.32665 0.91578 0.93285 1.25741 0.95251 0.94300 1.02376 1.69993 1.19502 1.32610 1.33102 0.85356 0.77923 0.78738 0.78496 1.19462 1.19417 1.19739 1.77316 0.86085 1.23768 1.27530 0.89480 0.88135 0.90614 0.80511 0.73914 0.89566 0.87427 0.87996 0.84851 0.93591 0.87167 0.91107 0.93464 0.87849 0.93806 0.94975 0.94260 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.60 10.44 71.24 0.74 -0.85 16 2 C 0.06 2.40 7.20 43.06 0.31 2.71 16 3 C -0.29 -11.66 9.58 22.15 0.21 -11.45 16 4 C 0.29 12.87 7.68 131.25 1.01 13.88 16 5 N -0.62 -25.08 5.40 -309.58 -1.67 -26.75 16 6 C 0.52 18.24 7.85 87.23 0.68 18.92 16 7 O -0.49 -16.87 12.33 -3.38 -0.04 -16.91 16 8 C 0.54 17.35 8.04 87.23 0.70 18.05 16 9 O -0.54 -20.72 16.68 -3.32 -0.06 -20.77 16 10 N -0.62 -14.25 3.37 -811.16 -2.73 -16.99 16 11 C 0.09 1.40 7.24 83.18 0.60 2.00 16 12 C -0.12 -1.07 7.63 31.02 0.24 -0.83 16 13 C 0.14 2.25 1.60 0.49 0.00 2.25 16 14 C -0.15 -1.82 9.27 71.98 0.67 -1.15 16 15 C -0.15 -2.54 8.73 71.98 0.63 -1.91 16 16 N -0.37 -18.44 3.62 -348.39 -1.26 -19.70 16 17 C 0.27 14.94 6.02 85.63 0.52 15.45 16 18 C -0.56 -32.36 9.39 25.60 0.24 -32.12 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 20 C 0.03 1.41 5.46 84.65 0.46 1.87 16 21 N -0.91 -52.95 13.29 21.45 0.28 -52.66 16 22 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 N -0.32 -15.43 12.56 -47.49 -0.60 -16.03 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.18 6.48 5.83 -2.91 -0.02 6.46 16 31 H 0.42 17.85 7.46 -92.71 -0.69 17.16 16 32 H 0.09 1.45 7.39 -2.39 -0.02 1.43 16 33 H 0.11 1.27 7.28 -2.39 -0.02 1.25 16 34 H 0.10 0.87 8.13 -2.39 -0.02 0.86 16 35 H 0.13 0.24 8.11 -2.39 -0.02 0.22 16 36 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.82 7.02 -2.38 -0.02 0.80 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.04 2.16 7.53 -2.38 -0.02 2.14 16 44 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -74.33 372.35 3.30 -71.03 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.34 Total: 25.45 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 7.01 Total: 26.83 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -5.98 Total: -132.12 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.10 Total: -37.68 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -74.33 3.30 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525898603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.984 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds