Wall clock time and date at job start Tue Mar 31 2020 12:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48496 * 109.46948 * 269.99554 * 3 2 1 5 5 H 1.48499 * 109.47008 * 29.99774 * 3 2 1 6 6 H 1.48502 * 109.46960 * 149.99593 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99893 * 170.15629 * 7 2 1 9 9 C 1.41544 * 120.00047 * 350.16358 * 7 2 1 10 10 C 1.41178 * 120.99544 * 153.72577 * 9 7 2 11 11 C 1.37585 * 119.01231 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.11109 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23336 * 359.65883 * 12 11 10 14 14 N 1.39475 * 119.58360 * 180.33761 * 13 12 11 15 15 C 1.34775 * 119.99848 * 5.65755 * 14 13 12 16 16 O 1.21276 * 120.00027 * 5.07440 * 15 14 13 17 17 C 1.50692 * 119.99819 * 185.07801 * 15 14 13 18 18 C 1.53001 * 109.47054 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47346 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.47346 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.46858 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.46662 * 179.97438 * 21 20 19 23 23 C 1.34776 * 120.00015 * 179.97438 * 22 21 20 24 24 N 1.34781 * 120.00235 * 180.02562 * 23 22 21 25 25 O 1.21591 * 119.99846 * 0.02562 * 23 22 21 26 26 C 1.38601 * 120.83670 * 0.63805 * 13 12 11 27 27 H 0.96997 * 119.99660 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.49233 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.44490 * 180.02562 * 11 10 9 30 30 H 0.97002 * 120.00083 * 185.65667 * 14 13 12 31 31 H 1.09000 * 109.47675 * 299.99969 * 17 15 14 32 32 H 1.09002 * 109.47654 * 59.99742 * 17 15 14 33 33 H 1.09003 * 109.47073 * 299.99522 * 18 17 15 34 34 H 1.08998 * 109.47199 * 59.99868 * 18 17 15 35 35 H 1.09004 * 109.47134 * 300.00271 * 19 18 17 36 36 H 1.09002 * 109.47572 * 59.99483 * 19 18 17 37 37 H 1.09000 * 109.46597 * 299.99557 * 20 19 18 38 38 H 1.08998 * 109.47199 * 59.99790 * 20 19 18 39 39 H 1.08993 * 109.47470 * 299.99669 * 21 20 19 40 40 H 1.08998 * 109.47266 * 59.99978 * 21 20 19 41 41 H 0.97003 * 120.00441 * 0.02562 * 22 21 20 42 42 H 0.96999 * 119.99676 * 0.02562 * 24 23 22 43 43 H 0.97001 * 119.99969 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.59791 * 179.68084 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3155 -2.4295 0.2105 10 6 1.8136 -3.6470 -0.3019 11 6 1.1073 -4.8056 -0.0740 12 7 -0.0213 -4.7931 0.6118 13 6 -0.5278 -3.6790 1.1187 14 7 -1.7203 -3.7306 1.8402 15 6 -2.2902 -4.9204 2.1157 16 8 -1.7210 -5.9490 1.8177 17 6 -3.6348 -4.9727 2.7942 18 6 -4.0507 -6.4320 2.9900 19 6 -5.4162 -6.4852 3.6782 20 6 -5.8319 -7.9445 3.8747 21 6 -7.1971 -7.9976 4.5635 22 7 -7.5953 -9.3949 4.7510 23 6 -8.7707 -9.6871 5.3423 24 7 -9.1369 -10.9726 5.5152 25 8 -9.5007 -8.7909 5.7196 26 6 0.1091 -2.4616 0.9359 27 1 -0.4849 0.8400 -0.0004 28 1 2.7352 -3.6687 -0.8644 29 1 1.4822 -5.7410 -0.4625 30 1 -2.1396 -2.9101 2.1436 31 1 -3.5717 -4.4800 3.7644 32 1 -4.3740 -4.4637 2.1756 33 1 -4.1139 -6.9252 2.0199 34 1 -3.3115 -6.9407 3.6088 35 1 -5.3536 -5.9919 4.6483 36 1 -6.1553 -5.9767 3.0592 37 1 -5.8944 -8.4381 2.9048 38 1 -5.0928 -8.4526 4.4940 39 1 -7.1342 -7.5041 5.5333 40 1 -7.9364 -7.4894 3.9445 41 1 -7.0128 -10.1098 4.4503 42 1 -8.5543 -11.6874 5.2145 43 1 -9.9830 -11.1828 5.9404 44 1 -0.3099 -1.5548 1.3466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531928684.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:01 Heat of formation + Delta-G solvation = -57.243201 kcal Electronic energy + Delta-G solvation = -24855.870891 eV Core-core repulsion = 21000.191186 eV Total energy + Delta-G solvation = -3855.679704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.12682 -39.60695 -37.90985 -36.56996 -34.59053 -34.25943 -33.83758 -33.70121 -31.08658 -30.50051 -28.69724 -26.54537 -25.99462 -23.15479 -21.96793 -21.69309 -21.39710 -20.80835 -19.54312 -18.54036 -17.67932 -17.60135 -16.78145 -16.40983 -15.73792 -15.61629 -15.24536 -15.13532 -14.77409 -14.55327 -14.20788 -14.01796 -13.69307 -13.64733 -13.08474 -12.85333 -12.66249 -12.58100 -12.14332 -12.01305 -11.46801 -11.32831 -11.22930 -11.18806 -11.18019 -10.91698 -10.64726 -10.64362 -10.30465 -10.15665 -10.10182 -9.73674 -9.41056 -9.37064 -9.31937 -7.99930 -7.73939 -7.04526 -6.75877 -4.64451 2.54843 2.55203 2.78161 2.86703 3.00279 3.04736 3.18888 3.48026 3.66883 3.84220 4.10473 4.49391 4.66016 4.68292 4.78437 5.00842 5.08472 5.23584 5.38131 5.40993 5.54849 5.65980 5.67731 5.69952 5.78208 5.88178 6.03153 6.11008 6.18664 6.31254 6.33102 6.51663 6.57871 6.65220 6.79108 6.94561 7.11788 7.37885 7.46305 7.56932 7.77883 7.94880 8.21755 8.25712 8.42315 8.69411 8.74181 8.90977 9.67551 10.08132 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.001669 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.497624 B =16772.142381 C =17582.250514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.283 4.283 11 C 0.117 3.883 12 N -0.554 5.554 13 C 0.334 3.666 14 N -0.661 5.661 15 C 0.496 3.504 16 O -0.486 6.486 17 C -0.141 4.141 18 C -0.102 4.102 19 C -0.116 4.116 20 C -0.131 4.131 21 C 0.135 3.865 22 N -0.745 5.745 23 C 0.703 3.297 24 N -0.869 5.869 25 O -0.596 6.596 26 C -0.239 4.239 27 H 0.281 0.719 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.408 0.592 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.397 0.603 43 H 0.414 0.586 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.410 -12.500 8.481 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.307 4.307 11 C -0.038 4.038 12 N -0.273 5.273 13 C 0.109 3.891 14 N -0.307 5.307 15 C 0.281 3.719 16 O -0.357 6.357 17 C -0.181 4.181 18 C -0.140 4.140 19 C -0.154 4.154 20 C -0.169 4.169 21 C 0.011 3.989 22 N -0.402 5.402 23 C 0.401 3.599 24 N -0.438 5.438 25 O -0.474 6.474 26 C -0.265 4.265 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.243 0.757 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.224 0.776 43 H 0.246 0.754 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.224 -13.021 8.678 21.147 hybrid contribution 0.796 1.315 -0.239 1.556 sum -13.428 -11.705 8.439 19.712 Atomic orbital electron populations 1.69739 1.07576 1.29187 1.35691 1.25949 0.94878 1.01442 0.91994 0.86208 0.80448 0.80169 0.79311 1.19390 1.20053 1.18434 1.19581 0.95837 0.90021 1.43158 0.90077 1.17594 0.90393 0.92272 0.86457 1.21928 1.04157 0.94432 1.10148 1.21754 0.90633 0.96518 0.94870 1.67182 1.14959 1.28130 1.17013 1.18245 0.86692 0.90888 0.93225 1.43525 1.23465 1.09196 1.54528 1.20734 0.87271 0.83919 0.79969 1.90759 1.63084 1.32659 1.49183 1.21702 0.95142 0.99496 1.01797 1.21302 0.95852 0.95015 1.01807 1.21515 0.97337 0.95291 1.01291 1.21804 0.95486 0.98443 1.01182 1.21299 0.95964 0.80707 1.00904 1.45157 1.20592 1.09450 1.64970 1.16007 0.81867 0.83389 0.78646 1.43005 1.26370 1.05992 1.68390 1.90982 1.53878 1.45910 1.56660 1.21680 1.00956 0.95582 1.08242 0.90810 0.87978 0.85914 0.75742 0.89271 0.89142 0.91075 0.91139 0.91502 0.91466 0.91077 0.91105 0.91483 0.91477 0.76910 0.77570 0.75408 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.43 10.70 55.55 0.59 -18.84 16 2 C 0.08 1.81 5.31 -17.34 -0.09 1.71 16 3 Si 0.91 17.85 29.57 -169.99 -5.03 12.82 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.64 9.14 -37.65 -0.34 -11.99 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.71 5.60 -106.55 -0.60 3.11 16 10 C -0.28 -6.94 9.90 -38.70 -0.38 -7.32 16 11 C 0.12 2.80 11.15 -17.68 -0.20 2.61 16 12 N -0.55 -14.12 7.89 -12.52 -0.10 -14.22 16 13 C 0.33 8.08 7.40 -154.70 -1.15 6.93 16 14 N -0.66 -12.72 5.39 -11.49 -0.06 -12.78 16 15 C 0.50 8.93 7.78 -10.99 -0.09 8.85 16 16 O -0.49 -10.82 14.28 5.56 0.08 -10.74 16 17 C -0.14 -1.65 5.70 -27.89 -0.16 -1.81 16 18 C -0.10 -1.09 4.50 -26.73 -0.12 -1.21 16 19 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 20 C -0.13 -0.88 5.33 -26.73 -0.14 -1.02 16 21 C 0.14 1.04 5.67 -4.04 -0.02 1.02 16 22 N -0.75 -5.15 5.56 -65.23 -0.36 -5.51 16 23 C 0.70 6.46 8.84 -86.92 -0.77 5.69 16 24 N -0.87 -4.11 8.88 27.64 0.25 -3.86 16 25 O -0.60 -8.45 17.18 5.29 0.09 -8.36 16 26 C -0.24 -6.04 8.61 -38.48 -0.33 -6.37 16 27 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 28 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 30 H 0.41 6.39 8.70 -40.82 -0.36 6.04 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 1.60 8.49 -40.82 -0.35 1.26 16 42 H 0.40 0.62 8.84 -40.82 -0.36 0.26 16 43 H 0.41 1.64 8.93 -40.82 -0.36 1.27 16 44 H 0.13 3.32 6.11 -52.49 -0.32 3.00 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -35.63 375.59 -9.77 -45.40 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.36 Total: 11.27 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -4.53 Total: -0.84 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.32 Total: -55.20 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.63 -9.77 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531928684.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.845 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds