Wall clock time and date at job start Tue Mar 31 2020 12:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48496 * 109.46948 * 269.99554 * 3 2 1 5 5 H 1.48499 * 109.47008 * 29.99774 * 3 2 1 6 6 H 1.48502 * 109.46960 * 149.99593 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99893 * 170.15629 * 7 2 1 9 9 C 1.41544 * 120.00047 * 350.16358 * 7 2 1 10 10 C 1.41178 * 120.99544 * 153.72577 * 9 7 2 11 11 C 1.37585 * 119.01231 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.11109 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23336 * 359.65883 * 12 11 10 14 14 N 1.39475 * 119.58360 * 180.33761 * 13 12 11 15 15 C 1.34775 * 119.99848 * 5.65755 * 14 13 12 16 16 O 1.21276 * 120.00027 * 5.07440 * 15 14 13 17 17 C 1.50692 * 119.99819 * 185.07801 * 15 14 13 18 18 C 1.53001 * 109.47054 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47346 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.47346 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.46858 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.46662 * 179.97438 * 21 20 19 23 23 C 1.34776 * 120.00015 * 179.97438 * 22 21 20 24 24 N 1.34781 * 120.00235 * 180.02562 * 23 22 21 25 25 O 1.21591 * 119.99846 * 0.02562 * 23 22 21 26 26 C 1.38601 * 120.83670 * 0.63805 * 13 12 11 27 27 H 0.96997 * 119.99660 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.49233 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.44490 * 180.02562 * 11 10 9 30 30 H 0.97002 * 120.00083 * 185.65667 * 14 13 12 31 31 H 1.09000 * 109.47675 * 299.99969 * 17 15 14 32 32 H 1.09002 * 109.47654 * 59.99742 * 17 15 14 33 33 H 1.09003 * 109.47073 * 299.99522 * 18 17 15 34 34 H 1.08998 * 109.47199 * 59.99868 * 18 17 15 35 35 H 1.09004 * 109.47134 * 300.00271 * 19 18 17 36 36 H 1.09002 * 109.47572 * 59.99483 * 19 18 17 37 37 H 1.09000 * 109.46597 * 299.99557 * 20 19 18 38 38 H 1.08998 * 109.47199 * 59.99790 * 20 19 18 39 39 H 1.08993 * 109.47470 * 299.99669 * 21 20 19 40 40 H 1.08998 * 109.47266 * 59.99978 * 21 20 19 41 41 H 0.97003 * 120.00441 * 0.02562 * 22 21 20 42 42 H 0.96999 * 119.99676 * 0.02562 * 24 23 22 43 43 H 0.97001 * 119.99969 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.59791 * 179.68084 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3155 -2.4295 0.2105 10 6 1.8136 -3.6470 -0.3019 11 6 1.1073 -4.8056 -0.0740 12 7 -0.0213 -4.7931 0.6118 13 6 -0.5278 -3.6790 1.1187 14 7 -1.7203 -3.7306 1.8402 15 6 -2.2902 -4.9204 2.1157 16 8 -1.7210 -5.9490 1.8177 17 6 -3.6348 -4.9727 2.7942 18 6 -4.0507 -6.4320 2.9900 19 6 -5.4162 -6.4852 3.6782 20 6 -5.8319 -7.9445 3.8747 21 6 -7.1971 -7.9976 4.5635 22 7 -7.5953 -9.3949 4.7510 23 6 -8.7707 -9.6871 5.3423 24 7 -9.1369 -10.9726 5.5152 25 8 -9.5007 -8.7909 5.7196 26 6 0.1091 -2.4616 0.9359 27 1 -0.4849 0.8400 -0.0004 28 1 2.7352 -3.6687 -0.8644 29 1 1.4822 -5.7410 -0.4625 30 1 -2.1396 -2.9101 2.1436 31 1 -3.5717 -4.4800 3.7644 32 1 -4.3740 -4.4637 2.1756 33 1 -4.1139 -6.9252 2.0199 34 1 -3.3115 -6.9407 3.6088 35 1 -5.3536 -5.9919 4.6483 36 1 -6.1553 -5.9767 3.0592 37 1 -5.8944 -8.4381 2.9048 38 1 -5.0928 -8.4526 4.4940 39 1 -7.1342 -7.5041 5.5333 40 1 -7.9364 -7.4894 3.9445 41 1 -7.0128 -10.1098 4.4503 42 1 -8.5543 -11.6874 5.2145 43 1 -9.9830 -11.1828 5.9404 44 1 -0.3099 -1.5548 1.3466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531928684.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:00 Heat of formation + Delta-G solvation = -83.889742 kcal Electronic energy + Delta-G solvation = -24857.026371 eV Core-core repulsion = 21000.191186 eV Total energy + Delta-G solvation = -3856.835185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21030 -40.80682 -39.59752 -37.31972 -36.12598 -35.44864 -35.27066 -34.47500 -32.47657 -31.88575 -30.32653 -27.92559 -27.43531 -24.22817 -23.80040 -22.72247 -22.29923 -21.70843 -21.05145 -19.44017 -19.14352 -18.29697 -18.18497 -17.39642 -17.14198 -16.96111 -16.55060 -16.05317 -15.85925 -15.74979 -15.64133 -15.23598 -15.17966 -14.77217 -14.53321 -14.33958 -14.05692 -13.86609 -13.21727 -13.02436 -12.91927 -12.85208 -12.68855 -12.16211 -12.06395 -11.96786 -11.91991 -11.88700 -11.47589 -11.46671 -11.36687 -11.16872 -10.90311 -10.73615 -9.95204 -9.92719 -9.59459 -8.85952 -8.57509 -6.58110 0.75541 1.00431 1.41663 1.52961 1.56922 1.94439 1.99279 2.17069 2.20616 2.25605 2.83457 3.62648 3.69901 3.74700 3.90413 4.04707 4.06637 4.28137 4.30243 4.52365 4.66254 4.70839 4.76798 4.81490 4.87033 4.90461 4.96580 5.01903 5.08553 5.10819 5.24666 5.25548 5.45193 5.48517 5.50329 5.55373 5.67611 5.91110 5.93130 6.04643 6.16482 6.49978 6.64665 6.79905 6.84269 7.10819 7.37708 7.65949 7.85074 8.29308 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.001669 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.497624 B =16772.142381 C =17582.250514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.485 4.485 8 H 0.082 0.918 9 C 0.111 3.889 10 C -0.298 4.298 11 C 0.111 3.889 12 N -0.578 5.578 13 C 0.330 3.670 14 N -0.657 5.657 15 C 0.490 3.510 16 O -0.532 6.532 17 C -0.128 4.128 18 C -0.097 4.097 19 C -0.109 4.109 20 C -0.121 4.121 21 C 0.139 3.861 22 N -0.735 5.735 23 C 0.695 3.305 24 N -0.849 5.849 25 O -0.651 6.651 26 C -0.258 4.258 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.150 0.850 30 H 0.423 0.577 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.413 0.587 42 H 0.414 0.586 43 H 0.419 0.581 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 -12.128 9.022 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.322 4.322 11 C -0.043 4.043 12 N -0.298 5.298 13 C 0.104 3.896 14 N -0.304 5.304 15 C 0.278 3.722 16 O -0.406 6.406 17 C -0.168 4.168 18 C -0.135 4.135 19 C -0.147 4.147 20 C -0.159 4.159 21 C 0.014 3.986 22 N -0.392 5.392 23 C 0.393 3.607 24 N -0.418 5.418 25 O -0.534 6.534 26 C -0.283 4.283 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.167 0.833 30 H 0.261 0.739 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.249 0.751 42 H 0.245 0.755 43 H 0.252 0.748 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.903 -12.707 9.220 21.647 hybrid contribution 0.984 1.125 -0.424 1.553 sum -13.919 -11.582 8.796 20.131 Atomic orbital electron populations 1.69774 1.08876 1.30797 1.34891 1.26811 0.95713 1.04496 0.90897 0.85088 0.78979 0.75480 0.79478 1.18839 1.18768 1.18312 1.19873 0.96173 0.90981 1.44539 0.89951 1.18041 0.91286 0.93302 0.87074 1.22114 1.04954 0.94325 1.10793 1.22214 0.90301 0.97512 0.94270 1.67321 1.15730 1.28731 1.17992 1.18540 0.87907 0.90281 0.92848 1.43639 1.22112 1.10818 1.53847 1.21913 0.88794 0.82557 0.78901 1.90732 1.64733 1.34062 1.51067 1.21767 0.91298 1.00820 1.02867 1.21251 0.97208 0.94014 1.01033 1.21446 0.95512 0.96142 1.01610 1.21698 0.94867 0.98018 1.01335 1.21201 0.96117 0.81017 1.00266 1.45030 1.20189 1.09761 1.64254 1.16286 0.81932 0.83986 0.78543 1.42812 1.26730 1.05012 1.67265 1.90942 1.55583 1.47817 1.59040 1.21671 1.01454 0.95915 1.09269 0.89749 0.86651 0.83304 0.73916 0.86240 0.86648 0.92743 0.92467 0.90404 0.90604 0.90710 0.90583 0.92422 0.92523 0.75082 0.75476 0.74783 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.76 10.70 21.84 0.23 -39.52 16 2 C 0.04 1.76 5.31 85.29 0.45 2.21 16 3 Si 0.99 35.82 29.57 68.60 2.03 37.85 16 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.48 -25.16 9.14 23.52 0.21 -24.95 16 8 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 9 C 0.11 5.97 5.60 -21.11 -0.12 5.86 16 10 C -0.30 -14.91 9.90 22.84 0.23 -14.69 16 11 C 0.11 5.40 11.15 84.50 0.94 6.34 16 12 N -0.58 -29.89 7.89 -193.53 -1.53 -31.42 16 13 C 0.33 16.19 7.40 132.75 0.98 17.18 16 14 N -0.66 -25.05 5.39 -308.66 -1.66 -26.71 16 15 C 0.49 17.32 7.78 87.65 0.68 18.00 16 16 O -0.53 -23.87 14.28 -3.02 -0.04 -23.91 16 17 C -0.13 -2.69 5.70 29.85 0.17 -2.52 16 18 C -0.10 -1.92 4.50 30.59 0.14 -1.78 16 19 C -0.11 -1.43 5.21 30.59 0.16 -1.27 16 20 C -0.12 -1.40 5.33 30.60 0.16 -1.24 16 21 C 0.14 1.97 5.67 86.38 0.49 2.46 16 22 N -0.74 -9.14 5.56 -478.53 -2.66 -11.81 16 23 C 0.69 12.16 8.84 179.05 1.58 13.74 16 24 N -0.85 -6.72 8.88 -184.74 -1.64 -8.36 16 25 O -0.65 -18.53 17.18 -4.00 -0.07 -18.60 16 26 C -0.26 -13.29 8.61 22.98 0.20 -13.09 16 27 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 28 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 29 H 0.15 6.22 8.06 -2.91 -0.02 6.19 16 30 H 0.42 12.91 8.70 -92.71 -0.81 12.10 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.41 2.49 8.49 -92.71 -0.79 1.70 16 42 H 0.41 0.38 8.84 -92.71 -0.82 -0.44 16 43 H 0.42 2.76 8.93 -92.71 -0.83 1.93 16 44 H 0.13 6.59 6.11 -2.91 -0.02 6.58 16 Total: -1.00 -79.66 375.59 -1.23 -80.89 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -2.17 Total: 35.35 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.28 Total: 6.25 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -7.26 Total: -117.82 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.11 Total: -42.51 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -79.66 -1.23 -80.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531928684.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.002 kcal (2) G-P(sol) polarization free energy of solvation -79.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds