Wall clock time and date at job start Tue Mar 31 2020 13:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39692 * 125.76603 * 2 1 4 4 C 1.36225 * 107.85342 * 179.97438 * 3 2 1 5 5 N 1.39193 * 126.26960 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00250 * 359.97084 * 5 4 3 7 7 O 1.21395 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.49310 * 120.00064 * 180.02562 * 6 5 4 9 9 O 1.21366 * 120.00140 * 359.97438 * 8 6 5 10 10 N 1.34784 * 119.99973 * 179.97438 * 8 6 5 11 11 C 1.47425 * 125.64483 * 359.68705 * 10 8 6 12 12 C 1.55131 * 104.71707 * 155.81989 * 11 10 8 13 13 C 1.55149 * 101.48857 * 37.29675 * 12 11 10 14 14 C 1.47018 * 125.64747 * 179.97438 * 10 8 6 15 15 H 1.09001 * 109.88106 * 61.60429 * 14 10 8 16 16 C 1.52997 * 109.88147 * 300.43596 * 14 10 8 17 17 N 1.35849 * 107.45388 * 359.97438 * 4 3 2 18 18 C 1.46501 * 126.09282 * 180.25972 * 17 4 3 19 19 C 1.50693 * 109.47632 * 269.71919 * 18 17 4 20 20 H 1.08006 * 120.00060 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00330 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99846 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00011 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47065 * 90.00081 * 23 21 19 25 25 H 1.48499 * 109.47331 * 209.99678 * 23 21 19 26 26 H 1.48500 * 109.47246 * 330.00410 * 23 21 19 27 27 N 1.30840 * 125.76866 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47166 * 269.99838 * 1 2 3 29 29 H 1.09000 * 109.47453 * 29.99508 * 1 2 3 30 30 H 1.09000 * 109.47300 * 150.00183 * 1 2 3 31 31 H 1.07995 * 126.07939 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99878 * 179.97438 * 5 4 3 33 33 H 1.08999 * 110.37152 * 274.74586 * 11 10 8 34 34 H 1.09000 * 110.37017 * 37.07695 * 11 10 8 35 35 H 1.09001 * 111.19307 * 279.18688 * 12 11 10 36 36 H 1.09000 * 110.93538 * 155.28845 * 12 11 10 37 37 H 1.08998 * 110.72239 * 205.96964 * 13 12 11 38 38 H 1.08999 * 110.72561 * 82.69494 * 13 12 11 39 39 H 1.09008 * 109.46816 * 61.46158 * 16 14 10 40 40 H 1.08999 * 109.46745 * 181.45036 * 16 14 10 41 41 H 1.08990 * 109.47512 * 301.45339 * 16 14 10 42 42 H 1.08998 * 109.47167 * 29.72270 * 18 17 4 43 43 H 1.09007 * 109.46859 * 149.71644 * 18 17 4 44 44 H 0.96999 * 119.99784 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7145 0.0006 5 7 4.7484 1.5291 0.0013 6 6 4.6119 2.8699 0.0008 7 8 3.5044 3.3672 0.0003 8 6 5.8226 3.7436 0.0010 9 8 6.9298 3.2464 0.0020 10 7 5.6860 5.0845 0.0000 11 6 4.4071 5.8178 -0.0078 12 6 4.7423 7.2014 0.6087 13 6 6.1554 7.4655 0.0251 14 6 6.7877 6.0580 0.0006 15 1 7.3893 5.9376 -0.9004 16 6 7.6589 5.8571 1.2422 17 7 3.6088 -0.6440 0.0015 18 6 4.7857 -1.5164 0.0077 19 6 5.1919 -1.8223 -1.4108 20 1 4.6299 -1.4078 -2.2348 21 6 6.2810 -2.6312 -1.6569 22 7 6.6352 -2.8984 -2.8950 23 14 7.2526 -3.3486 -0.2320 24 1 6.6757 -4.6630 0.1485 25 1 8.6690 -3.5292 -0.6397 26 1 7.1854 -2.4241 0.9282 27 7 2.2718 -1.0616 0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9870 2.1597 -0.0004 32 1 5.6333 1.1317 0.0020 33 1 4.0421 5.9331 -1.0283 34 1 3.6687 5.2994 0.6039 35 1 4.7723 7.1510 1.6971 36 1 4.0336 7.9589 0.2741 37 1 6.7227 8.1317 0.6750 38 1 6.0861 7.8751 -0.9827 39 1 8.0916 4.8567 1.2244 40 1 8.4580 6.5984 1.2491 41 1 7.0481 5.9730 2.1373 42 1 5.6066 -1.0155 0.5208 43 1 4.5465 -2.4454 0.5255 44 1 7.4011 -3.4678 -3.0682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533001025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:20 Heat of formation + Delta-G solvation = 21.022983 kcal Electronic energy + Delta-G solvation = -27285.300483 eV Core-core repulsion = 23433.014655 eV Total energy + Delta-G solvation = -3852.285828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30556 -40.45624 -38.89096 -37.70073 -34.99036 -33.81801 -32.22012 -32.06898 -31.40230 -29.60347 -28.63392 -26.36558 -26.16677 -25.45556 -22.97524 -22.36073 -21.43833 -20.23807 -19.78947 -19.07906 -17.67630 -17.17982 -16.86369 -16.62865 -16.33851 -15.69545 -15.32785 -14.71418 -14.55773 -14.20135 -13.99958 -13.76575 -13.69279 -13.37605 -13.17243 -12.88508 -12.78387 -12.63283 -12.52336 -12.36092 -12.27614 -11.95039 -11.91013 -11.64274 -11.22680 -11.14783 -11.01422 -10.95392 -10.80596 -10.60916 -10.25958 -9.89814 -9.73710 -9.44197 -8.97828 -8.82541 -8.02639 -7.62295 -6.30478 -4.35264 1.22636 1.99609 2.56093 3.05648 3.14155 3.18637 3.19273 3.23063 3.50281 3.62523 4.12748 4.17970 4.25235 4.38996 4.56406 4.86036 4.95238 5.03351 5.09596 5.22897 5.26080 5.40327 5.48364 5.50544 5.57306 5.61497 5.76158 5.83495 5.91084 5.94759 5.99066 6.03074 6.10170 6.12823 6.22040 6.33097 6.49852 6.67739 7.01819 7.21270 7.27939 7.37615 7.46310 7.75458 7.98492 8.25380 8.47833 8.74350 9.23939 10.81761 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.004095 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.065016 B = 6836.594908 C = 8755.831298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.284 4.284 4 C 0.298 3.702 5 N -0.609 5.609 6 C 0.516 3.484 7 O -0.493 6.493 8 C 0.529 3.471 9 O -0.509 6.509 10 N -0.588 5.588 11 C 0.093 3.907 12 C -0.135 4.135 13 C -0.129 4.129 14 C 0.132 3.868 15 H 0.081 0.919 16 C -0.165 4.165 17 N -0.341 5.341 18 C 0.228 3.772 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.882 5.882 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.265 1.265 27 N -0.275 5.275 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.427 0.573 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.041 0.959 43 H 0.052 0.948 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 21.065 8.556 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.316 4.316 4 C 0.077 3.923 5 N -0.256 5.256 6 C 0.297 3.703 7 O -0.367 6.367 8 C 0.312 3.688 9 O -0.384 6.384 10 N -0.323 5.323 11 C -0.029 4.029 12 C -0.173 4.173 13 C -0.167 4.167 14 C 0.030 3.970 15 H 0.099 0.901 16 C -0.223 4.223 17 N -0.126 5.126 18 C 0.109 3.891 19 C -0.586 4.586 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.518 5.518 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.189 1.189 27 N -0.100 5.100 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.266 0.734 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.903 19.621 8.429 21.552 hybrid contribution 1.296 0.058 0.402 1.358 sum -1.607 19.679 8.831 21.629 Atomic orbital electron populations 1.20046 0.87257 1.02714 1.02158 1.22040 0.96668 0.90820 1.01574 1.21288 0.88779 1.00609 1.20933 1.17948 0.87629 0.83181 1.03589 1.42290 1.09406 1.04873 1.69063 1.19838 0.89699 0.82266 0.78496 1.90646 1.26097 1.73392 1.46523 1.19416 0.88945 0.81860 0.78622 1.90809 1.26245 1.73368 1.48015 1.48287 1.09376 1.03784 1.70870 1.22775 0.85897 0.91732 1.02468 1.22879 0.96761 0.96636 1.01035 1.22737 0.96576 0.95077 1.02309 1.21703 0.88230 0.87487 0.99631 0.90078 1.22165 0.99552 1.03688 0.96918 1.49123 1.06234 1.01775 1.55466 1.20006 0.79204 0.89975 0.99891 1.21162 1.14459 1.32694 0.90240 0.90022 1.24809 0.96484 0.95187 0.95863 1.69869 1.26832 1.36312 1.18832 0.86897 0.80076 0.80515 0.82596 1.19477 1.20393 1.18925 1.77373 0.85756 1.21767 1.25154 0.91242 0.90953 0.91305 0.81799 0.73445 0.90625 0.87836 0.90482 0.89560 0.89660 0.90292 0.90820 0.91425 0.92345 0.94113 0.92977 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.01 0.38 -0.50 16 2 C 0.05 1.04 7.20 -82.47 -0.59 0.45 16 3 C -0.28 -5.54 9.58 -39.76 -0.38 -5.92 16 4 C 0.30 6.24 7.68 -152.86 -1.17 5.07 16 5 N -0.61 -11.32 5.40 -11.80 -0.06 -11.39 16 6 C 0.52 8.50 7.82 -11.65 -0.09 8.41 16 7 O -0.49 -8.05 10.89 5.46 0.06 -7.99 16 8 C 0.53 7.98 7.69 -11.65 -0.09 7.89 16 9 O -0.51 -8.78 15.37 5.48 0.08 -8.70 16 10 N -0.59 -6.93 3.08 -163.43 -0.50 -7.43 16 11 C 0.09 0.88 6.08 -2.41 -0.01 0.87 16 12 C -0.14 -0.85 7.10 -24.47 -0.17 -1.03 16 13 C -0.13 -0.79 6.49 -24.90 -0.16 -0.95 16 14 C 0.13 1.24 3.49 -66.95 -0.23 1.00 16 15 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.17 -1.52 9.06 37.16 0.34 -1.18 16 17 N -0.34 -7.89 3.62 -61.47 -0.22 -8.11 16 18 C 0.23 5.50 5.09 -5.20 -0.03 5.47 16 19 C -0.55 -15.37 9.94 -34.44 -0.34 -15.71 16 20 H 0.08 2.60 8.06 -52.48 -0.42 2.18 16 21 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 22 N -0.88 -26.29 13.96 55.43 0.77 -25.52 16 23 Si 0.87 20.30 27.47 -169.99 -4.67 15.63 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 27 N -0.28 -6.25 12.56 33.64 0.42 -5.82 16 28 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.16 2.97 5.83 -52.49 -0.31 2.66 16 32 H 0.43 7.94 7.46 -40.82 -0.30 7.64 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.10 6.14 -51.93 -0.32 0.78 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.40 7.83 -51.93 -0.41 0.00 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.87 6.75 -51.92 -0.35 0.52 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.92 6.58 -51.93 -0.34 0.58 16 43 H 0.05 1.24 7.57 -51.93 -0.39 0.85 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -32.94 362.16 -7.56 -40.51 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.24 Total: 7.32 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.67 Total: 6.04 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.41 Total: -58.27 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.14 Total: -16.68 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.94 -7.56 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533001025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.532 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds