Wall clock time and date at job start Tue Mar 31 2020 13:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39692 * 125.76603 * 2 1 4 4 C 1.36225 * 107.85342 * 179.97438 * 3 2 1 5 5 N 1.39193 * 126.26960 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00250 * 359.97084 * 5 4 3 7 7 O 1.21395 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.49310 * 120.00064 * 180.02562 * 6 5 4 9 9 O 1.21366 * 120.00140 * 359.97438 * 8 6 5 10 10 N 1.34784 * 119.99973 * 179.97438 * 8 6 5 11 11 C 1.47425 * 125.64483 * 359.68705 * 10 8 6 12 12 C 1.55131 * 104.71707 * 155.81989 * 11 10 8 13 13 C 1.55149 * 101.48857 * 37.29675 * 12 11 10 14 14 C 1.47018 * 125.64747 * 179.97438 * 10 8 6 15 15 H 1.09001 * 109.88106 * 61.60429 * 14 10 8 16 16 C 1.52997 * 109.88147 * 300.43596 * 14 10 8 17 17 N 1.35849 * 107.45388 * 359.97438 * 4 3 2 18 18 C 1.46501 * 126.09282 * 180.25972 * 17 4 3 19 19 C 1.50693 * 109.47632 * 269.71919 * 18 17 4 20 20 H 1.08006 * 120.00060 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00330 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99846 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00011 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47065 * 90.00081 * 23 21 19 25 25 H 1.48499 * 109.47331 * 209.99678 * 23 21 19 26 26 H 1.48500 * 109.47246 * 330.00410 * 23 21 19 27 27 N 1.30840 * 125.76866 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47166 * 269.99838 * 1 2 3 29 29 H 1.09000 * 109.47453 * 29.99508 * 1 2 3 30 30 H 1.09000 * 109.47300 * 150.00183 * 1 2 3 31 31 H 1.07995 * 126.07939 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99878 * 179.97438 * 5 4 3 33 33 H 1.08999 * 110.37152 * 274.74586 * 11 10 8 34 34 H 1.09000 * 110.37017 * 37.07695 * 11 10 8 35 35 H 1.09001 * 111.19307 * 279.18688 * 12 11 10 36 36 H 1.09000 * 110.93538 * 155.28845 * 12 11 10 37 37 H 1.08998 * 110.72239 * 205.96964 * 13 12 11 38 38 H 1.08999 * 110.72561 * 82.69494 * 13 12 11 39 39 H 1.09008 * 109.46816 * 61.46158 * 16 14 10 40 40 H 1.08999 * 109.46745 * 181.45036 * 16 14 10 41 41 H 1.08990 * 109.47512 * 301.45339 * 16 14 10 42 42 H 1.08998 * 109.47167 * 29.72270 * 18 17 4 43 43 H 1.09007 * 109.46859 * 149.71644 * 18 17 4 44 44 H 0.96999 * 119.99784 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7145 0.0006 5 7 4.7484 1.5291 0.0013 6 6 4.6119 2.8699 0.0008 7 8 3.5044 3.3672 0.0003 8 6 5.8226 3.7436 0.0010 9 8 6.9298 3.2464 0.0020 10 7 5.6860 5.0845 0.0000 11 6 4.4071 5.8178 -0.0078 12 6 4.7423 7.2014 0.6087 13 6 6.1554 7.4655 0.0251 14 6 6.7877 6.0580 0.0006 15 1 7.3893 5.9376 -0.9004 16 6 7.6589 5.8571 1.2422 17 7 3.6088 -0.6440 0.0015 18 6 4.7857 -1.5164 0.0077 19 6 5.1919 -1.8223 -1.4108 20 1 4.6299 -1.4078 -2.2348 21 6 6.2810 -2.6312 -1.6569 22 7 6.6352 -2.8984 -2.8950 23 14 7.2526 -3.3486 -0.2320 24 1 6.6757 -4.6630 0.1485 25 1 8.6690 -3.5292 -0.6397 26 1 7.1854 -2.4241 0.9282 27 7 2.2718 -1.0616 0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9870 2.1597 -0.0004 32 1 5.6333 1.1317 0.0020 33 1 4.0421 5.9331 -1.0283 34 1 3.6687 5.2994 0.6039 35 1 4.7723 7.1510 1.6971 36 1 4.0336 7.9589 0.2741 37 1 6.7227 8.1317 0.6750 38 1 6.0861 7.8751 -0.9827 39 1 8.0916 4.8567 1.2244 40 1 8.4580 6.5984 1.2491 41 1 7.0481 5.9730 2.1373 42 1 5.6066 -1.0155 0.5208 43 1 4.5465 -2.4454 0.5255 44 1 7.4011 -3.4678 -3.0682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533001025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:19 Heat of formation + Delta-G solvation = -1.416428 kcal Electronic energy + Delta-G solvation = -27286.273529 eV Core-core repulsion = 23433.014655 eV Total energy + Delta-G solvation = -3853.258874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.71481 -41.74114 -40.08418 -38.76808 -36.46065 -35.69006 -34.04517 -33.00359 -32.10335 -31.21538 -30.19294 -28.04811 -26.96948 -26.58031 -24.49014 -23.71885 -22.45241 -21.48867 -21.18094 -20.26929 -19.31742 -18.91372 -18.18440 -17.99747 -17.48994 -16.80831 -16.71914 -16.24304 -16.04070 -15.66887 -15.20383 -14.99346 -14.77696 -14.54615 -14.45909 -14.15666 -14.10160 -13.79100 -13.57976 -13.55140 -13.34311 -13.18458 -13.02145 -12.94742 -12.71151 -12.59052 -12.24793 -11.99195 -11.92747 -11.85612 -11.71263 -11.52068 -11.44180 -10.96046 -10.70430 -9.95366 -9.69435 -9.21624 -8.46912 -6.59289 -0.08465 0.71753 1.04142 1.29987 1.32310 1.41118 1.69450 1.78172 2.06435 2.20538 2.26966 2.84842 2.97068 3.60827 3.64874 3.71660 3.98586 4.07855 4.21402 4.32425 4.39148 4.42102 4.46168 4.57258 4.57685 4.63191 4.83204 4.88144 4.89438 4.91605 4.95546 5.03243 5.07505 5.13003 5.13782 5.17100 5.22813 5.26650 5.40507 5.78760 5.81037 5.90906 6.04438 6.14923 6.40720 6.46296 6.67095 6.88079 7.05327 8.69624 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.004095 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.065016 B = 6836.594908 C = 8755.831298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.063 3.937 3 C -0.288 4.288 4 C 0.290 3.710 5 N -0.617 5.617 6 C 0.517 3.483 7 O -0.490 6.490 8 C 0.527 3.473 9 O -0.540 6.540 10 N -0.579 5.579 11 C 0.083 3.917 12 C -0.124 4.124 13 C -0.118 4.118 14 C 0.120 3.880 15 H 0.074 0.926 16 C -0.161 4.161 17 N -0.367 5.367 18 C 0.238 3.762 19 C -0.556 4.556 20 H 0.025 0.975 21 C 0.025 3.975 22 N -0.933 5.933 23 Si 0.949 3.051 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.239 1.239 27 N -0.319 5.319 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.180 0.820 32 H 0.424 0.576 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 23.596 10.576 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C -0.320 4.320 4 C 0.069 3.931 5 N -0.264 5.264 6 C 0.299 3.701 7 O -0.363 6.363 8 C 0.308 3.692 9 O -0.418 6.418 10 N -0.313 5.313 11 C -0.038 4.038 12 C -0.162 4.162 13 C -0.155 4.155 14 C 0.018 3.982 15 H 0.092 0.908 16 C -0.218 4.218 17 N -0.153 5.153 18 C 0.118 3.882 19 C -0.594 4.594 20 H 0.043 0.957 21 C -0.176 4.176 22 N -0.570 5.570 23 Si 0.769 3.231 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.162 1.162 27 N -0.144 5.144 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.197 0.803 32 H 0.262 0.738 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.329 22.231 10.456 24.791 hybrid contribution 1.286 -0.562 -0.328 1.442 sum -2.043 21.669 10.128 24.006 Atomic orbital electron populations 1.20272 0.83403 1.04086 1.04219 1.22936 0.98934 0.89781 0.98608 1.21568 0.88274 1.01350 1.20761 1.18362 0.88931 0.82813 1.02996 1.42434 1.08706 1.05488 1.69806 1.20229 0.90467 0.81693 0.77720 1.90622 1.26314 1.73231 1.46125 1.19161 0.87795 0.82923 0.79299 1.90795 1.26772 1.74118 1.50110 1.48505 1.11447 1.02937 1.68372 1.22995 0.84630 0.93313 1.02850 1.22882 0.97351 0.94785 1.01144 1.22758 0.96183 0.92865 1.03716 1.22043 0.87873 0.88795 0.99470 0.90804 1.22124 1.00202 1.02570 0.96941 1.49007 1.06233 1.02440 1.57587 1.19748 0.80462 0.90787 0.97196 1.21222 1.14319 1.32849 0.90993 0.95708 1.25818 0.97442 0.95215 0.99090 1.70023 1.27853 1.37471 1.21687 0.85712 0.78073 0.80142 0.79136 1.18495 1.19774 1.16194 1.77322 0.85919 1.23635 1.27508 0.88685 0.88472 0.91014 0.80320 0.73791 0.90255 0.89085 0.90025 0.87061 0.87343 0.89035 0.94034 0.88902 0.91883 0.92209 0.92573 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.44 71.24 0.74 -0.83 16 2 C 0.06 2.40 7.20 43.06 0.31 2.71 16 3 C -0.29 -11.13 9.58 22.15 0.21 -10.92 16 4 C 0.29 12.38 7.68 131.25 1.01 13.39 16 5 N -0.62 -23.60 5.40 -309.58 -1.67 -25.27 16 6 C 0.52 17.26 7.82 87.23 0.68 17.94 16 7 O -0.49 -15.80 10.89 -3.39 -0.04 -15.84 16 8 C 0.53 16.09 7.69 87.22 0.67 16.76 16 9 O -0.54 -19.24 15.37 -3.30 -0.05 -19.29 16 10 N -0.58 -13.18 3.08 -789.33 -2.43 -15.61 16 11 C 0.08 1.43 6.08 86.93 0.53 1.96 16 12 C -0.12 -1.14 7.10 32.06 0.23 -0.91 16 13 C -0.12 -1.02 6.49 31.78 0.21 -0.82 16 14 C 0.12 2.05 3.49 45.34 0.16 2.21 16 15 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 16 C -0.16 -2.72 9.06 71.98 0.65 -2.07 16 17 N -0.37 -17.45 3.62 -348.39 -1.26 -18.71 16 18 C 0.24 11.68 5.09 85.63 0.44 12.12 16 19 C -0.56 -32.63 9.94 25.60 0.25 -32.38 16 20 H 0.02 1.69 8.06 -2.91 -0.02 1.66 16 21 C 0.02 1.43 5.47 84.65 0.46 1.89 16 22 N -0.93 -57.69 13.96 21.45 0.30 -57.39 16 23 Si 0.95 42.00 27.47 68.60 1.88 43.88 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 27 N -0.32 -14.70 12.56 -47.49 -0.60 -15.30 16 28 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.18 6.26 5.83 -2.91 -0.02 6.24 16 32 H 0.42 16.46 7.46 -92.71 -0.69 15.77 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.82 6.14 -2.39 -0.01 1.80 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.53 7.83 -2.39 -0.02 0.51 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.04 0.98 6.75 -2.38 -0.02 0.97 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.06 2.68 6.58 -2.39 -0.02 2.66 16 43 H 0.06 2.68 7.57 -2.38 -0.02 2.67 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -76.28 362.16 2.97 -73.31 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.29 Total: 29.15 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.55 Total: 21.06 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -5.66 Total: -132.27 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.09 Total: -35.12 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.88 kcal Total: -76.28 2.97 -73.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533001025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.895 kcal (2) G-P(sol) polarization free energy of solvation -76.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds