Wall clock time and date at job start Tue Mar 31 2020 13:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39695 * 125.77317 * 2 1 4 4 C 1.36215 * 107.86135 * 179.79494 * 3 2 1 5 5 N 1.39197 * 126.27409 * 180.24159 * 4 3 2 6 6 C 1.34783 * 119.99855 * 0.17725 * 5 4 3 7 7 O 1.21388 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.49303 * 119.99831 * 179.97438 * 6 5 4 9 9 O 1.21366 * 119.99997 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99546 * 179.97438 * 8 6 5 11 11 C 1.47423 * 125.65496 * 359.69128 * 10 8 6 12 12 C 1.55126 * 104.72313 * 155.81505 * 11 10 8 13 13 C 1.55153 * 101.48467 * 37.30078 * 12 11 10 14 14 C 1.47029 * 125.64527 * 180.02562 * 10 8 6 15 15 H 1.09001 * 109.87773 * 300.43892 * 14 10 8 16 16 C 1.53001 * 109.88480 * 61.60303 * 14 10 8 17 17 N 1.35852 * 107.45642 * 0.39399 * 4 3 2 18 18 C 1.46497 * 126.10010 * 179.87384 * 17 4 3 19 19 C 1.50694 * 109.47115 * 269.71256 * 18 17 4 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 N 1.30858 * 125.76967 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47375 * 269.97803 * 1 2 3 29 29 H 1.08998 * 109.47451 * 29.97680 * 1 2 3 30 30 H 1.08996 * 109.47284 * 149.98084 * 1 2 3 31 31 H 1.08004 * 126.06669 * 0.06371 * 3 2 1 32 32 H 0.97002 * 120.00046 * 180.17398 * 5 4 3 33 33 H 1.09000 * 110.36540 * 274.75470 * 11 10 8 34 34 H 1.09004 * 110.35798 * 37.06665 * 11 10 8 35 35 H 1.08998 * 111.19268 * 279.19537 * 12 11 10 36 36 H 1.09005 * 110.93673 * 155.28955 * 12 11 10 37 37 H 1.09007 * 110.72319 * 205.96703 * 13 12 11 38 38 H 1.08999 * 110.72444 * 82.69654 * 13 12 11 39 39 H 1.09003 * 109.47220 * 58.54383 * 16 14 10 40 40 H 1.08994 * 109.47199 * 178.54490 * 16 14 10 41 41 H 1.09001 * 109.46801 * 298.55165 * 16 14 10 42 42 H 1.09007 * 109.47078 * 149.70895 * 18 17 4 43 43 H 1.09003 * 109.46733 * 29.71618 * 18 17 4 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7145 0.0046 5 7 4.7484 1.5290 0.0109 6 6 4.6118 2.8699 0.0166 7 8 3.5045 3.3671 0.0156 8 6 5.8225 3.7435 0.0239 9 8 6.9297 3.2463 0.0243 10 7 5.6859 5.0843 0.0290 11 6 4.4071 5.8178 0.0216 12 6 4.7408 7.1983 0.6455 13 6 6.1553 7.4652 0.0665 14 6 6.7877 6.0579 0.0359 15 1 7.4069 5.9105 0.9207 16 6 7.6341 5.8948 -1.2282 17 7 3.6089 -0.6440 -0.0015 18 6 4.7857 -1.5165 -0.0020 19 6 5.1890 -1.8151 -1.4230 20 1 4.6249 -1.3971 -2.2437 21 6 6.2776 -2.6228 -1.6755 22 7 6.9642 -3.1322 -0.6762 23 14 6.7770 -2.9934 -3.4369 24 1 7.9700 -3.8778 -3.4375 25 1 5.6568 -3.6721 -4.1367 26 1 7.1017 -1.7246 -4.1368 27 7 2.2718 -1.0617 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9869 2.1596 0.0010 32 1 5.6333 1.1316 0.0113 33 1 4.0445 5.9378 -0.9993 34 1 3.6673 5.2963 0.6289 35 1 4.7682 7.1426 1.7337 36 1 4.0329 7.9575 0.3129 37 1 6.7212 8.1283 0.7210 38 1 6.0884 7.8796 -0.9394 39 1 7.0055 6.0374 -2.1073 40 1 8.4330 6.6363 -1.2287 41 1 8.0666 4.8945 -1.2493 42 1 4.5476 -2.4481 0.5115 43 1 5.6077 -1.0182 0.5119 44 1 7.7298 -3.7007 -0.8538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533001026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:23 Heat of formation + Delta-G solvation = 14.700576 kcal Electronic energy + Delta-G solvation = -27243.290887 eV Core-core repulsion = 23390.730899 eV Total energy + Delta-G solvation = -3852.559988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24041 -40.38127 -38.82623 -37.65993 -34.91445 -33.80018 -32.13685 -31.98208 -31.54250 -29.26139 -28.49816 -26.18116 -26.03409 -25.32561 -22.99581 -22.47266 -21.55229 -20.25915 -19.75406 -18.96477 -17.47718 -17.19688 -16.80211 -16.42961 -16.27953 -15.66479 -15.07255 -14.57679 -14.50176 -14.18615 -14.11653 -13.86213 -13.71013 -13.41231 -12.94407 -12.92447 -12.77946 -12.55401 -12.48163 -12.06947 -11.93215 -11.84746 -11.74817 -11.51406 -11.22381 -11.11089 -11.06257 -10.96886 -10.83619 -10.52494 -10.30995 -9.82748 -9.81288 -9.38793 -8.95291 -8.67913 -7.96778 -7.55588 -6.29738 -4.38391 1.27053 2.04963 2.63481 3.14997 3.22531 3.23896 3.26275 3.30918 3.56347 3.72629 4.17057 4.25478 4.28238 4.43088 4.56501 4.93470 5.00312 5.03679 5.11368 5.28879 5.30303 5.41305 5.47627 5.53990 5.59476 5.67420 5.76963 5.86029 5.96783 5.98804 6.07867 6.09528 6.13411 6.17373 6.31774 6.53982 6.83186 7.00980 7.05749 7.34575 7.46670 7.53749 7.64939 7.81756 7.85500 8.10138 8.57050 8.69801 9.29087 10.77695 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.004089 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.007145 B = 6846.318450 C = 8840.936126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.287 4.287 4 C 0.294 3.706 5 N -0.607 5.607 6 C 0.515 3.485 7 O -0.495 6.495 8 C 0.529 3.471 9 O -0.509 6.509 10 N -0.589 5.589 11 C 0.094 3.906 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.132 3.868 15 H 0.081 0.919 16 C -0.166 4.166 17 N -0.341 5.341 18 C 0.255 3.745 19 C -0.543 4.543 20 H 0.064 0.936 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.907 3.093 24 H -0.283 1.283 25 H -0.273 1.273 26 H -0.274 1.274 27 N -0.278 5.278 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.163 0.837 32 H 0.428 0.572 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 21.345 2.711 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.319 4.319 4 C 0.072 3.928 5 N -0.255 5.255 6 C 0.296 3.704 7 O -0.369 6.369 8 C 0.311 3.689 9 O -0.384 6.384 10 N -0.324 5.324 11 C -0.028 4.028 12 C -0.174 4.174 13 C -0.167 4.167 14 C 0.030 3.970 15 H 0.099 0.901 16 C -0.224 4.224 17 N -0.127 5.127 18 C 0.138 3.862 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.734 3.266 24 H -0.209 1.209 25 H -0.199 1.199 26 H -0.199 1.199 27 N -0.104 5.104 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.267 0.733 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.369 19.875 2.764 20.347 hybrid contribution 1.052 0.263 -1.001 1.476 sum -2.316 20.138 1.764 20.347 Atomic orbital electron populations 1.20025 0.87448 1.02525 1.02100 1.22016 0.96587 0.90903 1.02020 1.21269 0.88877 1.00516 1.21258 1.17973 0.87522 0.83488 1.03809 1.42303 1.09527 1.04803 1.68880 1.19828 0.89650 0.82330 0.78599 1.90640 1.26096 1.73428 1.46696 1.19444 0.89000 0.81847 0.78618 1.90817 1.26269 1.73344 1.47934 1.48299 1.09362 1.03801 1.70938 1.22754 0.85942 0.91763 1.02350 1.22886 0.96783 0.96694 1.01055 1.22755 0.96416 0.95073 1.02419 1.21712 0.88300 0.87496 0.99492 0.90064 1.22172 0.99852 1.03696 0.96686 1.49587 1.06577 1.01926 1.54562 1.19685 0.77725 0.89708 0.99089 1.21275 1.13579 1.32091 0.91202 0.91731 1.24930 0.95576 0.94842 0.98236 1.69905 1.19133 1.32395 1.31164 0.86396 0.78074 0.78514 0.83628 1.20850 1.19864 1.19946 1.77371 0.86102 1.21812 1.25069 0.91316 0.91088 0.91433 0.82000 0.73303 0.90765 0.87796 0.90427 0.89558 0.89820 0.90179 0.92296 0.91382 0.90869 0.92366 0.93643 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.00 0.38 -0.51 16 2 C 0.05 0.97 7.20 -82.47 -0.59 0.38 16 3 C -0.29 -5.71 9.58 -39.77 -0.38 -6.09 16 4 C 0.29 6.28 7.68 -152.86 -1.17 5.11 16 5 N -0.61 -11.55 5.40 -11.80 -0.06 -11.61 16 6 C 0.52 8.64 7.82 -11.65 -0.09 8.54 16 7 O -0.49 -8.21 10.89 5.46 0.06 -8.16 16 8 C 0.53 8.10 7.70 -11.66 -0.09 8.01 16 9 O -0.51 -8.95 15.51 5.48 0.09 -8.86 16 10 N -0.59 -7.05 3.06 -163.44 -0.50 -7.55 16 11 C 0.09 0.91 6.08 -2.41 -0.01 0.89 16 12 C -0.14 -0.88 7.10 -24.47 -0.17 -1.05 16 13 C -0.13 -0.81 6.47 -24.90 -0.16 -0.97 16 14 C 0.13 1.26 3.46 -66.95 -0.23 1.03 16 15 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.17 -1.61 9.10 37.16 0.34 -1.28 16 17 N -0.34 -8.10 3.62 -61.47 -0.22 -8.32 16 18 C 0.26 6.57 6.02 -5.20 -0.03 6.53 16 19 C -0.54 -15.02 9.39 -34.44 -0.32 -15.34 16 20 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 21 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 22 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 23 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 N -0.28 -6.44 12.56 33.64 0.42 -6.02 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.16 2.99 5.83 -52.48 -0.31 2.69 16 32 H 0.43 8.25 7.45 -40.82 -0.30 7.95 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.13 6.14 -51.93 -0.32 0.81 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.92 6.88 -51.93 -0.36 0.56 16 42 H 0.06 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -31.60 366.04 -7.92 -39.51 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.28 Total: 6.44 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.65 Total: 7.03 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.37 Total: -57.80 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.14 Total: -17.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.60 -7.92 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533001026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.211 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds