Wall clock time and date at job start Tue Mar 31 2020 13:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39695 * 125.77317 * 2 1 4 4 C 1.36215 * 107.86135 * 179.79494 * 3 2 1 5 5 N 1.39197 * 126.27409 * 180.24159 * 4 3 2 6 6 C 1.34783 * 119.99855 * 0.17725 * 5 4 3 7 7 O 1.21388 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.49303 * 119.99831 * 179.97438 * 6 5 4 9 9 O 1.21366 * 119.99997 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99546 * 179.97438 * 8 6 5 11 11 C 1.47423 * 125.65496 * 359.69128 * 10 8 6 12 12 C 1.55126 * 104.72313 * 155.81505 * 11 10 8 13 13 C 1.55153 * 101.48467 * 37.30078 * 12 11 10 14 14 C 1.47029 * 125.64527 * 180.02562 * 10 8 6 15 15 H 1.09001 * 109.87773 * 300.43892 * 14 10 8 16 16 C 1.53001 * 109.88480 * 61.60303 * 14 10 8 17 17 N 1.35852 * 107.45642 * 0.39399 * 4 3 2 18 18 C 1.46497 * 126.10010 * 179.87384 * 17 4 3 19 19 C 1.50694 * 109.47115 * 269.71256 * 18 17 4 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 N 1.30858 * 125.76967 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47375 * 269.97803 * 1 2 3 29 29 H 1.08998 * 109.47451 * 29.97680 * 1 2 3 30 30 H 1.08996 * 109.47284 * 149.98084 * 1 2 3 31 31 H 1.08004 * 126.06669 * 0.06371 * 3 2 1 32 32 H 0.97002 * 120.00046 * 180.17398 * 5 4 3 33 33 H 1.09000 * 110.36540 * 274.75470 * 11 10 8 34 34 H 1.09004 * 110.35798 * 37.06665 * 11 10 8 35 35 H 1.08998 * 111.19268 * 279.19537 * 12 11 10 36 36 H 1.09005 * 110.93673 * 155.28955 * 12 11 10 37 37 H 1.09007 * 110.72319 * 205.96703 * 13 12 11 38 38 H 1.08999 * 110.72444 * 82.69654 * 13 12 11 39 39 H 1.09003 * 109.47220 * 58.54383 * 16 14 10 40 40 H 1.08994 * 109.47199 * 178.54490 * 16 14 10 41 41 H 1.09001 * 109.46801 * 298.55165 * 16 14 10 42 42 H 1.09007 * 109.47078 * 149.70895 * 18 17 4 43 43 H 1.09003 * 109.46733 * 29.71618 * 18 17 4 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7145 0.0046 5 7 4.7484 1.5290 0.0109 6 6 4.6118 2.8699 0.0166 7 8 3.5045 3.3671 0.0156 8 6 5.8225 3.7435 0.0239 9 8 6.9297 3.2463 0.0243 10 7 5.6859 5.0843 0.0290 11 6 4.4071 5.8178 0.0216 12 6 4.7408 7.1983 0.6455 13 6 6.1553 7.4652 0.0665 14 6 6.7877 6.0579 0.0359 15 1 7.4069 5.9105 0.9207 16 6 7.6341 5.8948 -1.2282 17 7 3.6089 -0.6440 -0.0015 18 6 4.7857 -1.5165 -0.0020 19 6 5.1890 -1.8151 -1.4230 20 1 4.6249 -1.3971 -2.2437 21 6 6.2776 -2.6228 -1.6755 22 7 6.9642 -3.1322 -0.6762 23 14 6.7770 -2.9934 -3.4369 24 1 7.9700 -3.8778 -3.4375 25 1 5.6568 -3.6721 -4.1367 26 1 7.1017 -1.7246 -4.1368 27 7 2.2718 -1.0617 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9869 2.1596 0.0010 32 1 5.6333 1.1316 0.0113 33 1 4.0445 5.9378 -0.9993 34 1 3.6673 5.2963 0.6289 35 1 4.7682 7.1426 1.7337 36 1 4.0329 7.9575 0.3129 37 1 6.7212 8.1283 0.7210 38 1 6.0884 7.8796 -0.9394 39 1 7.0055 6.0374 -2.1073 40 1 8.4330 6.6363 -1.2287 41 1 8.0666 4.8945 -1.2493 42 1 4.5476 -2.4481 0.5115 43 1 5.6077 -1.0182 0.5119 44 1 7.7298 -3.7007 -0.8538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533001026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:22 Heat of formation + Delta-G solvation = -5.392888 kcal Electronic energy + Delta-G solvation = -27244.162205 eV Core-core repulsion = 23390.730899 eV Total energy + Delta-G solvation = -3853.431306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68048 -41.71175 -40.05375 -38.75068 -36.42586 -35.72104 -33.88713 -32.94905 -32.26475 -30.88669 -30.09627 -27.84755 -26.99224 -26.49269 -24.80660 -23.61176 -22.46289 -21.52703 -21.23639 -20.21788 -18.96393 -18.69768 -18.30318 -17.94330 -17.52590 -16.95573 -16.64838 -16.15245 -15.99674 -15.64923 -15.02287 -14.97285 -14.72914 -14.49913 -14.45476 -14.17728 -14.08355 -13.68943 -13.60955 -13.44756 -13.30367 -13.14679 -12.97631 -12.79076 -12.70393 -12.62500 -12.31815 -12.11207 -11.98477 -11.76521 -11.74396 -11.60603 -11.41418 -10.79570 -10.68671 -9.94413 -9.69949 -9.19492 -8.39936 -6.57835 -0.06854 0.75676 1.07012 1.33935 1.35481 1.44311 1.73920 1.80393 2.08397 2.25334 2.33954 2.90660 2.98641 3.59771 3.66500 3.77797 3.96713 4.11862 4.24181 4.30010 4.42525 4.47996 4.60349 4.64259 4.64816 4.77786 4.79932 4.87982 4.92376 4.93575 4.96313 5.05380 5.13280 5.14341 5.16514 5.20734 5.32628 5.36971 5.46348 5.72071 5.83293 5.92600 5.98343 6.09576 6.38812 6.54849 6.68742 6.94044 7.13981 8.66831 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.004089 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.007145 B = 6846.318450 C = 8840.936126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.061 3.939 3 C -0.289 4.289 4 C 0.288 3.712 5 N -0.616 5.616 6 C 0.517 3.483 7 O -0.490 6.490 8 C 0.526 3.474 9 O -0.541 6.541 10 N -0.579 5.579 11 C 0.084 3.916 12 C -0.125 4.125 13 C -0.117 4.117 14 C 0.121 3.879 15 H 0.078 0.922 16 C -0.162 4.162 17 N -0.367 5.367 18 C 0.273 3.727 19 C -0.560 4.560 20 H 0.049 0.951 21 C 0.025 3.975 22 N -0.914 5.914 23 Si 0.970 3.030 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.270 1.270 27 N -0.323 5.323 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.179 0.821 32 H 0.423 0.577 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 24.316 2.019 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.321 4.321 4 C 0.066 3.934 5 N -0.264 5.264 6 C 0.299 3.701 7 O -0.364 6.364 8 C 0.308 3.692 9 O -0.419 6.419 10 N -0.313 5.313 11 C -0.037 4.037 12 C -0.163 4.163 13 C -0.154 4.154 14 C 0.019 3.981 15 H 0.096 0.904 16 C -0.220 4.220 17 N -0.153 5.153 18 C 0.154 3.846 19 C -0.598 4.598 20 H 0.068 0.932 21 C -0.177 4.177 22 N -0.552 5.552 23 Si 0.794 3.206 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.195 1.195 27 N -0.148 5.148 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.196 0.804 32 H 0.261 0.739 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.289 22.916 2.083 23.407 hybrid contribution 1.242 -0.518 -0.737 1.534 sum -3.047 22.398 1.346 22.645 Atomic orbital electron populations 1.20257 0.83428 1.04130 1.04074 1.22936 0.98903 0.89781 0.98850 1.21548 0.88207 1.01294 1.21008 1.18390 0.88880 0.82917 1.03198 1.42458 1.08739 1.05482 1.69706 1.20215 0.90450 0.81674 0.77776 1.90615 1.26272 1.73224 1.46240 1.19175 0.87801 0.82943 0.79294 1.90804 1.26863 1.74132 1.50113 1.48516 1.11491 1.02906 1.68365 1.22981 0.84606 0.93300 1.02836 1.22889 0.97424 0.94876 1.01100 1.22774 0.95999 0.92790 1.03867 1.22058 0.87913 0.88833 0.99248 0.90382 1.22138 1.00574 1.02454 0.96851 1.49350 1.06423 1.02597 1.56939 1.19203 0.78567 0.88982 0.97871 1.21394 1.14028 1.32728 0.91617 0.93234 1.25739 0.95270 0.94319 1.02321 1.69989 1.19463 1.32649 1.33093 0.85421 0.78015 0.78553 0.78628 1.19465 1.19663 1.19455 1.77330 0.86105 1.23788 1.27551 0.89010 0.88342 0.90942 0.80356 0.73874 0.90194 0.89149 0.90089 0.86968 0.87445 0.88844 0.92156 0.88783 0.94304 0.95042 0.94207 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.44 71.23 0.74 -0.84 16 2 C 0.06 2.35 7.20 43.05 0.31 2.66 16 3 C -0.29 -11.37 9.58 22.15 0.21 -11.16 16 4 C 0.29 12.64 7.68 131.25 1.01 13.64 16 5 N -0.62 -24.40 5.40 -309.58 -1.67 -26.07 16 6 C 0.52 17.64 7.82 87.22 0.68 18.32 16 7 O -0.49 -16.04 10.89 -3.36 -0.04 -16.08 16 8 C 0.53 16.44 7.70 87.22 0.67 17.12 16 9 O -0.54 -19.88 15.51 -3.30 -0.05 -19.93 16 10 N -0.58 -13.39 3.06 -789.34 -2.42 -15.81 16 11 C 0.08 1.45 6.08 86.93 0.53 1.98 16 12 C -0.13 -1.17 7.10 32.06 0.23 -0.94 16 13 C -0.12 -1.02 6.47 31.78 0.21 -0.82 16 14 C 0.12 2.10 3.46 45.34 0.16 2.26 16 15 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 16 C -0.16 -2.97 9.10 71.98 0.66 -2.32 16 17 N -0.37 -18.22 3.62 -348.40 -1.26 -19.48 16 18 C 0.27 14.82 6.02 85.63 0.52 15.34 16 19 C -0.56 -32.16 9.39 25.60 0.24 -31.92 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.03 1.41 5.46 84.66 0.46 1.87 16 22 N -0.91 -52.69 13.29 21.45 0.28 -52.41 16 23 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 N -0.32 -15.32 12.56 -47.49 -0.60 -15.91 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.18 6.33 5.83 -2.91 -0.02 6.32 16 32 H 0.42 17.43 7.45 -92.71 -0.69 16.74 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.84 6.14 -2.38 -0.01 1.82 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.09 0.64 7.85 -2.39 -0.02 0.62 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.04 0.99 6.88 -2.39 -0.02 0.97 16 42 H 0.03 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.04 2.16 7.51 -2.39 -0.02 2.15 16 44 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -71.28 366.04 3.23 -68.05 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.34 Total: 26.20 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 6.62 Total: 25.20 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -5.66 Total: -129.67 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.09 Total: -36.00 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.28 3.23 -68.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533001026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.658 kcal (2) G-P(sol) polarization free energy of solvation -71.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds