Wall clock time and date at job start Tue Mar 31 2020 13:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.52993 * 109.47224 * 124.99792 * 3 2 1 5 5 H 1.09001 * 109.47163 * 304.99894 * 4 3 2 6 6 C 1.53005 * 109.47179 * 184.99799 * 4 3 2 7 7 N 1.46501 * 109.47210 * 65.00081 * 4 3 2 8 8 C 1.34772 * 120.00174 * 205.00148 * 7 4 3 9 9 O 1.21367 * 120.00016 * 359.97438 * 8 7 4 10 10 C 1.49313 * 120.00114 * 179.97438 * 8 7 4 11 11 O 1.21397 * 119.99621 * 0.02562 * 10 8 7 12 12 N 1.34772 * 120.00114 * 179.97438 * 10 8 7 13 13 C 1.39191 * 119.99842 * 180.02562 * 12 10 8 14 14 C 1.36219 * 126.27749 * 359.68497 * 13 12 10 15 15 C 1.39688 * 107.86078 * 179.84837 * 14 13 12 16 16 C 1.50697 * 125.76832 * 180.16382 * 15 14 13 17 17 N 1.30849 * 108.45992 * 0.42481 * 15 14 13 18 18 N 1.35859 * 126.27303 * 179.97438 * 13 12 10 19 19 C 1.46500 * 126.09357 * 359.97438 * 18 13 12 20 20 C 1.50696 * 109.47677 * 90.00017 * 19 18 13 21 21 H 1.08001 * 119.99585 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00438 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99908 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00022 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47026 * 59.99883 * 24 22 20 26 26 H 1.48503 * 109.46872 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47259 * 299.99890 * 24 22 20 28 28 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 30 30 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 32 32 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 33 33 H 1.08996 * 109.46993 * 300.00553 * 6 4 3 34 34 H 1.09001 * 109.46711 * 60.00554 * 6 4 3 35 35 H 1.09001 * 109.47197 * 179.97438 * 6 4 3 36 36 H 0.97005 * 119.99703 * 24.99740 * 7 4 3 37 37 H 0.96996 * 119.99888 * 359.97438 * 12 10 8 38 38 H 1.08005 * 126.06267 * 0.02562 * 14 13 12 39 39 H 1.09005 * 109.47763 * 270.27777 * 16 15 14 40 40 H 1.08998 * 109.47659 * 30.27995 * 16 15 14 41 41 H 1.09001 * 109.47510 * 150.28079 * 16 15 14 42 42 H 1.09001 * 109.46869 * 210.00171 * 19 18 13 43 43 H 1.09002 * 109.47444 * 329.99357 * 19 18 13 44 44 H 0.96994 * 120.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 2.4882 1.1470 2.1060 6 6 3.7091 2.7047 1.2552 7 7 4.0547 0.2970 1.0002 8 6 4.6912 -0.2169 2.0712 9 8 4.4200 0.1790 3.1860 10 6 5.7300 -1.2734 1.8863 11 8 6.0015 -1.6690 0.7712 12 7 6.3669 -1.7869 2.9573 13 6 7.3357 -2.7714 2.7848 14 6 7.7344 -3.3109 1.5993 15 6 8.7245 -4.2581 1.8711 16 6 9.4481 -5.0945 0.8475 17 7 8.9135 -4.3002 3.1652 18 7 8.0530 -3.3743 3.7686 19 6 7.9458 -3.1038 5.2044 20 6 6.9094 -4.0141 5.8111 21 1 6.3828 -4.7229 5.1893 22 6 6.6325 -3.9413 7.1599 23 7 7.2734 -3.0778 7.9170 24 14 5.3473 -5.0692 7.9117 25 1 5.7476 -6.4840 7.7034 26 1 5.2388 -4.7951 9.3672 27 1 4.0342 -4.8257 7.2624 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0044 30 1 1.8501 -0.9353 -0.0004 31 1 2.6213 1.4027 -0.9314 32 1 1.3586 2.1317 0.0895 33 1 4.2558 2.8909 0.3308 34 1 2.9505 3.4756 1.3902 35 1 4.4009 2.7248 2.0973 36 1 4.2716 -0.0192 0.1091 37 1 6.1507 -1.4700 3.8481 38 1 7.3546 -3.0503 0.6224 39 1 8.8999 -6.0222 0.6829 40 1 9.5174 -4.5424 -0.0897 41 1 10.4505 -5.3242 1.2088 42 1 8.9098 -3.2825 5.6807 43 1 7.6518 -2.0654 5.3576 44 1 7.0789 -3.0268 8.8659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533326689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:49 Heat of formation + Delta-G solvation = 21.279407 kcal Electronic energy + Delta-G solvation = -26595.536426 eV Core-core repulsion = 22743.261718 eV Total energy + Delta-G solvation = -3852.274709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18077 -40.23424 -38.63543 -37.03576 -34.99931 -33.97946 -33.68475 -32.07625 -31.22536 -29.26102 -28.49418 -27.04116 -26.06525 -25.21772 -22.89472 -21.90660 -20.92095 -20.13189 -19.95540 -19.56711 -17.97651 -16.98979 -16.82652 -16.40561 -16.04028 -15.72446 -15.51510 -14.86748 -14.69726 -14.35676 -14.15236 -14.06354 -13.64446 -13.44058 -12.98370 -12.94047 -12.77856 -12.55693 -12.50394 -12.07560 -12.01115 -11.87061 -11.64723 -11.50161 -11.40934 -11.26225 -11.08307 -10.84246 -10.54041 -10.31584 -9.85036 -9.82196 -9.71808 -9.52427 -9.40265 -8.68487 -7.97431 -7.56428 -6.30298 -4.39062 1.24553 1.95753 2.12107 2.62853 3.20914 3.22129 3.25688 3.26265 3.31640 3.55974 3.80608 4.27018 4.32602 4.43669 4.55814 4.71231 4.97814 5.03119 5.06435 5.22483 5.29710 5.37837 5.42082 5.54040 5.62969 5.67345 5.92050 5.99825 6.05207 6.07881 6.09513 6.14984 6.29305 6.32352 6.42738 6.52410 6.82289 6.96218 7.02751 7.38919 7.47329 7.55050 7.65147 7.81146 7.84437 8.08681 8.56509 8.69203 9.28521 10.77126 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.003693 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.786477 B = 7579.903531 C = 9233.692258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.101 4.101 4 C 0.144 3.856 5 H 0.095 0.905 6 C -0.166 4.166 7 N -0.696 5.696 8 C 0.516 3.484 9 O -0.507 6.507 10 C 0.511 3.489 11 O -0.499 6.499 12 N -0.607 5.607 13 C 0.293 3.707 14 C -0.288 4.288 15 C 0.049 3.951 16 C -0.062 4.062 17 N -0.278 5.278 18 N -0.341 5.341 19 C 0.255 3.745 20 C -0.543 4.543 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.907 3.093 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.412 0.588 37 H 0.428 0.572 38 H 0.163 0.837 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 9.666 -16.863 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.138 4.138 4 C 0.040 3.960 5 H 0.113 0.887 6 C -0.224 4.224 7 N -0.350 5.350 8 C 0.296 3.704 9 O -0.381 6.381 10 C 0.292 3.708 11 O -0.372 6.372 12 N -0.255 5.255 13 C 0.071 3.929 14 C -0.319 4.319 15 C -0.115 4.115 16 C -0.121 4.121 17 N -0.103 5.103 18 N -0.126 5.126 19 C 0.138 3.862 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.249 0.751 37 H 0.267 0.733 38 H 0.180 0.820 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.068 9.294 -15.522 19.809 hybrid contribution -1.234 -0.195 0.178 1.262 sum -9.302 9.099 -15.344 20.119 Atomic orbital electron populations 1.23873 0.95896 1.01956 1.00966 1.22944 0.96145 0.98465 0.99995 1.21097 0.98026 0.96522 0.98194 1.21092 0.87947 0.87071 0.99908 0.88660 1.22213 1.01586 0.95750 1.02894 1.45785 1.39363 1.40062 1.09828 1.19803 0.82517 0.82688 0.85375 1.90831 1.63644 1.59886 1.23780 1.19942 0.82853 0.83433 0.84582 1.90695 1.63466 1.59320 1.23753 1.42306 1.35426 1.35995 1.11752 1.17977 0.91832 0.92446 0.90620 1.21276 1.06871 1.06212 0.97568 1.22016 0.98221 0.98564 0.92731 1.20028 0.99137 0.97850 0.95094 1.77364 1.14670 1.10964 1.07309 1.49590 1.27558 1.27814 1.07684 1.19685 0.99951 0.97242 0.69332 1.21276 1.21794 1.21158 0.93955 0.91735 1.24927 0.96499 0.95608 0.96537 1.69902 1.41103 1.34952 1.06638 0.86396 0.81335 0.80934 0.77954 1.19871 1.20846 1.19936 0.88406 0.88555 0.87104 0.90051 0.89543 0.92075 0.91211 0.91560 0.75116 0.73269 0.82007 0.91247 0.91095 0.91470 0.92357 0.93623 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 14.32 29.01 0.42 -0.96 16 2 C -0.16 -1.21 9.25 -36.03 -0.33 -1.54 16 3 C -0.10 -0.63 5.20 -27.89 -0.15 -0.78 16 4 C 0.14 1.22 2.56 -67.93 -0.17 1.05 16 5 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 6 C -0.17 -1.28 9.48 37.16 0.35 -0.93 16 7 N -0.70 -7.09 4.76 -54.28 -0.26 -7.35 16 8 C 0.52 7.25 7.85 -11.65 -0.09 7.16 16 9 O -0.51 -8.41 16.14 5.48 0.09 -8.33 16 10 C 0.51 8.26 7.85 -11.65 -0.09 8.17 16 11 O -0.50 -8.24 13.60 5.46 0.07 -8.17 16 12 N -0.61 -11.31 5.40 -11.80 -0.06 -11.38 16 13 C 0.29 6.23 7.68 -152.86 -1.17 5.06 16 14 C -0.29 -5.72 9.58 -39.77 -0.38 -6.10 16 15 C 0.05 0.97 7.20 -82.47 -0.59 0.38 16 16 C -0.06 -0.89 10.44 36.00 0.38 -0.52 16 17 N -0.28 -6.42 12.56 33.64 0.42 -5.99 16 18 N -0.34 -8.06 3.62 -61.47 -0.22 -8.28 16 19 C 0.26 6.53 6.02 -5.20 -0.03 6.50 16 20 C -0.54 -14.95 9.39 -34.44 -0.32 -15.28 16 21 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 23 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 24 Si 0.91 21.25 29.54 -169.99 -5.02 16.22 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 28 H 0.10 0.68 8.06 -52.48 -0.42 0.26 16 29 H 0.10 0.58 7.84 -52.49 -0.41 0.17 16 30 H 0.11 0.94 8.03 -52.49 -0.42 0.52 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.43 7.79 -51.93 -0.40 0.03 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.41 3.59 8.07 -40.82 -0.33 3.26 16 37 H 0.43 8.08 7.46 -40.82 -0.30 7.77 16 38 H 0.16 3.02 5.83 -52.48 -0.31 2.71 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.05 1.15 7.52 -51.93 -0.39 0.76 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -31.60 381.95 -7.09 -38.69 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.31 Total: 9.03 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.29 Total: 3.98 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.61 Total: -57.19 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.16 Total: -16.49 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.60 -7.09 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533326689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.974 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds