Wall clock time and date at job start Tue Mar 31 2020 13:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.52993 * 109.47224 * 124.99792 * 3 2 1 5 5 H 1.09001 * 109.47163 * 304.99894 * 4 3 2 6 6 C 1.53005 * 109.47179 * 184.99799 * 4 3 2 7 7 N 1.46501 * 109.47210 * 65.00081 * 4 3 2 8 8 C 1.34772 * 120.00174 * 205.00148 * 7 4 3 9 9 O 1.21367 * 120.00016 * 359.97438 * 8 7 4 10 10 C 1.49313 * 120.00114 * 179.97438 * 8 7 4 11 11 O 1.21397 * 119.99621 * 0.02562 * 10 8 7 12 12 N 1.34772 * 120.00114 * 179.97438 * 10 8 7 13 13 C 1.39191 * 119.99842 * 180.02562 * 12 10 8 14 14 C 1.36219 * 126.27749 * 359.68497 * 13 12 10 15 15 C 1.39688 * 107.86078 * 179.84837 * 14 13 12 16 16 C 1.50697 * 125.76832 * 180.16382 * 15 14 13 17 17 N 1.30849 * 108.45992 * 0.42481 * 15 14 13 18 18 N 1.35859 * 126.27303 * 179.97438 * 13 12 10 19 19 C 1.46500 * 126.09357 * 359.97438 * 18 13 12 20 20 C 1.50696 * 109.47677 * 90.00017 * 19 18 13 21 21 H 1.08001 * 119.99585 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00438 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99908 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00022 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47026 * 59.99883 * 24 22 20 26 26 H 1.48503 * 109.46872 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47259 * 299.99890 * 24 22 20 28 28 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 30 30 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 32 32 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 33 33 H 1.08996 * 109.46993 * 300.00553 * 6 4 3 34 34 H 1.09001 * 109.46711 * 60.00554 * 6 4 3 35 35 H 1.09001 * 109.47197 * 179.97438 * 6 4 3 36 36 H 0.97005 * 119.99703 * 24.99740 * 7 4 3 37 37 H 0.96996 * 119.99888 * 359.97438 * 12 10 8 38 38 H 1.08005 * 126.06267 * 0.02562 * 14 13 12 39 39 H 1.09005 * 109.47763 * 270.27777 * 16 15 14 40 40 H 1.08998 * 109.47659 * 30.27995 * 16 15 14 41 41 H 1.09001 * 109.47510 * 150.28079 * 16 15 14 42 42 H 1.09001 * 109.46869 * 210.00171 * 19 18 13 43 43 H 1.09002 * 109.47444 * 329.99357 * 19 18 13 44 44 H 0.96994 * 120.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 2.4882 1.1470 2.1060 6 6 3.7091 2.7047 1.2552 7 7 4.0547 0.2970 1.0002 8 6 4.6912 -0.2169 2.0712 9 8 4.4200 0.1790 3.1860 10 6 5.7300 -1.2734 1.8863 11 8 6.0015 -1.6690 0.7712 12 7 6.3669 -1.7869 2.9573 13 6 7.3357 -2.7714 2.7848 14 6 7.7344 -3.3109 1.5993 15 6 8.7245 -4.2581 1.8711 16 6 9.4481 -5.0945 0.8475 17 7 8.9135 -4.3002 3.1652 18 7 8.0530 -3.3743 3.7686 19 6 7.9458 -3.1038 5.2044 20 6 6.9094 -4.0141 5.8111 21 1 6.3828 -4.7229 5.1893 22 6 6.6325 -3.9413 7.1599 23 7 7.2734 -3.0778 7.9170 24 14 5.3473 -5.0692 7.9117 25 1 5.7476 -6.4840 7.7034 26 1 5.2388 -4.7951 9.3672 27 1 4.0342 -4.8257 7.2624 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0044 30 1 1.8501 -0.9353 -0.0004 31 1 2.6213 1.4027 -0.9314 32 1 1.3586 2.1317 0.0895 33 1 4.2558 2.8909 0.3308 34 1 2.9505 3.4756 1.3902 35 1 4.4009 2.7248 2.0973 36 1 4.2716 -0.0192 0.1091 37 1 6.1507 -1.4700 3.8481 38 1 7.3546 -3.0503 0.6224 39 1 8.8999 -6.0222 0.6829 40 1 9.5174 -4.5424 -0.0897 41 1 10.4505 -5.3242 1.2088 42 1 8.9098 -3.2825 5.6807 43 1 7.6518 -2.0654 5.3576 44 1 7.0789 -3.0268 8.8659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533326689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:48 Heat of formation + Delta-G solvation = 0.555260 kcal Electronic energy + Delta-G solvation = -26596.435093 eV Core-core repulsion = 22743.261718 eV Total energy + Delta-G solvation = -3853.173375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64361 -41.57455 -39.88944 -37.91888 -36.43616 -35.73290 -34.64188 -33.86045 -32.03446 -30.87032 -30.07659 -27.83941 -27.61470 -26.47435 -24.76591 -23.02056 -21.94955 -21.45514 -21.02143 -20.65892 -19.32287 -18.88387 -18.23011 -17.93749 -17.29946 -16.92238 -16.56417 -16.21937 -16.11287 -15.87275 -15.42590 -15.21787 -14.63781 -14.60286 -14.44749 -14.09184 -14.08223 -13.65373 -13.58738 -13.44906 -13.14796 -13.09980 -12.99313 -12.84130 -12.71717 -12.48828 -12.30721 -12.14146 -12.08696 -11.85431 -11.75782 -11.41428 -10.84616 -10.78709 -10.44527 -10.16201 -9.69775 -9.19307 -8.39105 -6.56982 -0.04929 0.81856 1.08838 1.34869 1.36273 1.40028 1.45142 1.79661 1.81851 2.10899 2.29351 2.43160 2.91564 3.17932 3.78230 3.78858 3.94480 4.12898 4.13501 4.37516 4.45260 4.48948 4.65765 4.68319 4.71390 4.72978 4.80826 4.88167 4.90340 4.92145 5.04919 5.08031 5.16068 5.18756 5.26414 5.31816 5.47219 5.72957 5.76607 5.77861 5.88173 5.92769 5.97480 6.18851 6.45716 6.58581 6.77456 6.94653 7.14911 8.67629 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.003693 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.786477 B = 7579.903531 C = 9233.692258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 C -0.091 4.091 4 C 0.140 3.860 5 H 0.077 0.923 6 C -0.162 4.162 7 N -0.673 5.673 8 C 0.522 3.478 9 O -0.537 6.537 10 C 0.515 3.485 11 O -0.498 6.498 12 N -0.616 5.616 13 C 0.288 3.712 14 C -0.291 4.291 15 C 0.060 3.940 16 C -0.061 4.061 17 N -0.322 5.322 18 N -0.367 5.367 19 C 0.273 3.727 20 C -0.560 4.560 21 H 0.049 0.951 22 C 0.026 3.974 23 N -0.914 5.914 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.269 1.269 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.422 0.578 37 H 0.425 0.575 38 H 0.179 0.821 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.042 0.958 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 10.082 -18.987 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.191 4.191 3 C -0.128 4.128 4 C 0.037 3.963 5 H 0.095 0.905 6 C -0.220 4.220 7 N -0.327 5.327 8 C 0.301 3.699 9 O -0.414 6.414 10 C 0.296 3.704 11 O -0.372 6.372 12 N -0.263 5.263 13 C 0.066 3.934 14 C -0.322 4.322 15 C -0.105 4.105 16 C -0.119 4.119 17 N -0.147 5.147 18 N -0.153 5.153 19 C 0.154 3.846 20 C -0.598 4.598 21 H 0.068 0.932 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.194 1.194 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.260 0.740 37 H 0.263 0.737 38 H 0.196 0.804 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.539 9.732 -17.715 22.350 hybrid contribution -0.806 -0.287 0.683 1.095 sum -10.345 9.444 -17.032 22.052 Atomic orbital electron populations 1.24039 0.95893 1.02676 1.00112 1.23021 0.96505 0.98722 1.00826 1.21077 0.97676 0.96415 0.97608 1.21297 0.87718 0.86812 1.00425 0.90500 1.22188 1.01751 0.95566 1.02538 1.45820 1.38337 1.39330 1.09210 1.19442 0.82320 0.82317 0.85843 1.90828 1.64668 1.60904 1.25023 1.20391 0.82681 0.83377 0.83924 1.90666 1.63502 1.59404 1.23598 1.42467 1.35543 1.35993 1.12332 1.18390 0.91847 0.92597 0.90562 1.21553 1.06951 1.06169 0.97551 1.22926 0.97311 0.97848 0.92462 1.20256 0.99040 0.98034 0.94585 1.77323 1.16052 1.12276 1.09084 1.49356 1.29275 1.29441 1.07203 1.19209 0.97929 0.96617 0.70876 1.21396 1.22467 1.21452 0.94466 0.93232 1.25725 0.98275 0.96866 0.96731 1.69984 1.42136 1.35981 1.07072 0.85429 0.78807 0.78794 0.77635 1.19762 1.19502 1.19389 0.88626 0.87036 0.88401 0.88299 0.87499 0.90605 0.89096 0.94119 0.73958 0.73730 0.80434 0.89534 0.88159 0.90671 0.95070 0.94054 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.17 -2.35 9.25 25.64 0.24 -2.11 16 3 C -0.09 -0.88 5.20 29.85 0.16 -0.72 16 4 C 0.14 2.16 2.56 44.99 0.12 2.28 16 5 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 6 C -0.16 -2.18 9.48 71.98 0.68 -1.50 16 7 N -0.67 -12.91 4.76 -444.01 -2.12 -15.02 16 8 C 0.52 14.58 7.85 87.23 0.68 15.26 16 9 O -0.54 -18.19 16.14 -3.30 -0.05 -18.24 16 10 C 0.51 16.59 7.85 87.23 0.68 17.27 16 11 O -0.50 -15.92 13.60 -3.39 -0.05 -15.97 16 12 N -0.62 -23.56 5.40 -309.58 -1.67 -25.23 16 13 C 0.29 12.46 7.68 131.25 1.01 13.46 16 14 C -0.29 -11.39 9.58 22.15 0.21 -11.17 16 15 C 0.06 2.32 7.20 43.05 0.31 2.63 16 16 C -0.06 -1.59 10.44 71.24 0.74 -0.85 16 17 N -0.32 -15.20 12.56 -47.49 -0.60 -15.80 16 18 N -0.37 -18.01 3.62 -348.39 -1.26 -19.27 16 19 C 0.27 14.65 6.02 85.63 0.52 15.16 16 20 C -0.56 -31.85 9.39 25.60 0.24 -31.61 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 22 C 0.03 1.43 5.46 84.65 0.46 1.89 16 23 N -0.91 -52.22 13.29 21.45 0.28 -51.94 16 24 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H 0.10 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.11 1.04 7.84 -2.91 -0.02 1.02 16 30 H 0.10 1.56 8.03 -2.91 -0.02 1.54 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.68 7.79 -2.38 -0.02 0.66 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.42 6.53 8.07 -92.70 -0.75 5.79 16 37 H 0.42 16.82 7.46 -92.71 -0.69 16.13 16 38 H 0.18 6.31 5.83 -2.91 -0.02 6.29 16 39 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 42 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 2.21 7.52 -2.39 -0.02 2.19 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -69.98 381.95 3.18 -66.81 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.41 Total: 30.25 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 7.02 Total: 18.56 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.36 Total: -127.26 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.10 Total: -34.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.98 3.18 -66.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533326689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.361 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds