Wall clock time and date at job start Tue Mar 31 2020 12:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34821 * 116.99455 * 2 1 4 4 O 1.21532 * 120.00295 * 0.02562 * 3 2 1 5 5 C 1.47152 * 119.99635 * 179.97438 * 3 2 1 6 6 C 1.38000 * 125.90882 * 179.69338 * 5 3 2 7 7 C 1.39424 * 107.44674 * 180.26666 * 6 5 3 8 8 C 1.37936 * 107.47199 * 359.97438 * 7 6 5 9 9 C 1.47332 * 125.88612 * 180.02562 * 8 7 6 10 10 O 1.21612 * 120.00061 * 330.79808 * 9 8 7 11 11 N 1.34773 * 120.00301 * 150.79886 * 9 8 7 12 12 C 1.46931 * 120.62946 * 359.85061 * 11 9 8 13 13 C 1.52758 * 109.00664 * 233.58271 * 12 11 9 14 14 C 1.53037 * 109.38666 * 305.58497 * 13 12 11 15 15 C 1.52995 * 109.45349 * 181.25652 * 14 13 12 16 16 C 1.50696 * 109.47331 * 64.93396 * 15 14 13 17 17 H 1.08003 * 120.00107 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00223 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99847 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47238 * 60.00156 * 20 18 16 22 22 H 1.48506 * 109.46825 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47139 * 299.99669 * 20 18 16 24 24 C 1.53044 * 109.53377 * 61.24016 * 14 13 12 25 25 C 1.46920 * 120.63407 * 180.12867 * 11 9 8 26 26 N 1.36704 * 108.22814 * 0.02562 * 8 7 6 27 27 H 0.96999 * 125.66840 * 179.97438 * 26 8 7 28 28 H 1.08998 * 109.47107 * 59.99947 * 1 2 3 29 29 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47382 * 300.00118 * 1 2 3 31 31 H 1.08002 * 126.27384 * 0.28081 * 6 5 3 32 32 H 1.08003 * 126.26079 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.58481 * 353.41395 * 12 11 9 34 34 H 1.08995 * 109.58623 * 113.84218 * 12 11 9 35 35 H 1.09003 * 109.56440 * 185.54718 * 13 12 11 36 36 H 1.09000 * 109.35870 * 65.50201 * 13 12 11 37 37 H 1.09003 * 109.45814 * 301.22484 * 14 13 12 38 38 H 1.08996 * 109.47158 * 184.94211 * 15 14 13 39 39 H 1.09009 * 109.46980 * 304.93724 * 15 14 13 40 40 H 0.97006 * 120.00030 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.49363 * 178.68407 * 24 14 13 42 42 H 1.08993 * 109.50136 * 58.59161 * 24 14 13 43 43 H 1.09006 * 109.58584 * 246.15926 * 25 11 9 44 44 H 1.09003 * 109.58837 * 6.43484 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4020 2.2206 0.0005 5 6 3.5335 1.2784 0.0006 6 6 4.2832 2.4370 -0.0053 7 6 5.6270 2.0653 -0.0086 8 6 5.6754 0.6868 -0.0040 9 6 6.8986 -0.1344 -0.0047 10 8 7.9144 0.2881 -0.5229 11 7 6.8919 -1.3540 0.5689 12 6 5.6734 -1.8769 1.2019 13 6 5.9988 -2.3010 2.6328 14 6 7.1709 -3.2848 2.6170 15 6 7.4779 -3.7348 4.0467 16 6 6.3083 -4.5144 4.5900 17 1 5.4336 -4.6735 3.9767 18 6 6.3548 -5.0247 5.8700 19 7 7.4196 -4.8306 6.6170 20 14 4.9052 -5.9917 6.5432 21 1 4.6663 -7.1837 5.6903 22 1 5.2031 -6.4284 7.9310 23 1 3.6941 -5.1324 6.5434 24 6 8.4043 -2.6018 2.0215 25 6 8.1046 -2.1834 0.5786 26 7 4.3928 0.2139 0.0014 27 1 4.1347 -0.7212 0.0050 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.8993 3.4465 -0.0069 32 1 6.4748 2.7343 -0.0137 33 1 4.9079 -1.1010 1.2173 34 1 5.3117 -2.7389 0.6415 35 1 5.1273 -2.7806 3.0785 36 1 6.2695 -1.4219 3.2176 37 1 6.9086 -4.1525 2.0116 38 1 8.3665 -4.3659 4.0461 39 1 7.6539 -2.8601 4.6730 40 1 7.4522 -5.1893 7.5177 41 1 9.2449 -3.2956 2.0320 42 1 8.6525 -1.7199 2.6119 43 1 7.9451 -3.0710 -0.0337 44 1 8.9423 -1.6106 0.1805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569929502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:58 Heat of formation + Delta-G solvation = -73.290483 kcal Electronic energy + Delta-G solvation = -26985.197649 eV Core-core repulsion = 23096.529331 eV Total energy + Delta-G solvation = -3888.668318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.02042 -40.43622 -39.48299 -37.48913 -36.78895 -34.23393 -32.42140 -31.71732 -31.06127 -30.14072 -28.37021 -27.80333 -25.25947 -23.88141 -23.23762 -22.30457 -21.14063 -20.99535 -20.08686 -19.43816 -18.40143 -17.48227 -17.03038 -16.78470 -16.38540 -15.97518 -15.58125 -14.89940 -14.57775 -14.36966 -14.26147 -14.00890 -13.83933 -13.45532 -13.31120 -13.14596 -13.03501 -12.93428 -12.83057 -12.51717 -12.26955 -11.90229 -11.29206 -11.20073 -11.12968 -11.10299 -10.92780 -10.77642 -10.56452 -10.26914 -10.13484 -9.78283 -9.46513 -9.30363 -9.07486 -8.78618 -8.50697 -8.41440 -6.06187 -4.08935 0.62930 1.81374 2.18589 2.57590 2.73433 2.80481 3.19248 3.26743 3.32747 3.33376 4.25176 4.39098 4.43024 4.75085 4.76049 4.84640 4.90855 4.95018 5.18600 5.19036 5.24974 5.29916 5.37379 5.45905 5.53373 5.59934 5.77050 5.83483 5.89157 5.90470 6.13773 6.22018 6.25541 6.38603 6.43817 6.51204 6.80503 6.82260 6.86870 6.99575 7.27824 7.33749 7.58786 7.72920 7.92556 7.96801 8.34116 8.97147 9.55250 11.04953 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.003618 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.571740 B = 7737.229985 C = 9787.379248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.536 3.464 4 O -0.494 6.494 5 C -0.019 4.019 6 C -0.104 4.104 7 C -0.133 4.133 8 C 0.015 3.985 9 C 0.582 3.418 10 O -0.527 6.527 11 N -0.599 5.599 12 C 0.082 3.918 13 C -0.118 4.118 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.130 4.130 25 C 0.113 3.887 26 N -0.511 5.511 27 H 0.430 0.570 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.902 9.564 -14.843 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.280 6.280 3 C 0.381 3.619 4 O -0.381 6.381 5 C -0.133 4.133 6 C -0.130 4.130 7 C -0.158 4.158 8 C -0.104 4.104 9 C 0.369 3.631 10 O -0.403 6.403 11 N -0.331 5.331 12 C -0.041 4.041 13 C -0.156 4.156 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.169 4.169 25 C -0.009 4.009 26 N -0.114 5.114 27 H 0.275 0.725 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.587 9.828 -14.946 19.842 hybrid contribution -1.241 -1.064 0.657 1.762 sum -9.827 8.763 -14.290 19.431 Atomic orbital electron populations 1.23332 0.75077 1.04155 1.02881 1.86552 1.24420 1.32473 1.84524 1.19931 0.86854 0.81925 0.73214 1.90892 1.65266 1.35842 1.46071 1.19456 0.86665 0.88631 1.18529 1.21303 0.91824 0.97175 1.02691 1.21259 0.97222 0.91975 1.05388 1.20758 0.83431 0.94742 1.11459 1.17234 0.86366 0.80533 0.78949 1.90820 1.32465 1.71001 1.46009 1.48146 1.13483 1.16218 1.55275 1.22334 0.86137 0.98897 0.96701 1.21813 1.01146 1.00018 0.92584 1.21203 0.92300 0.95990 1.00433 1.19112 0.96890 0.96195 0.88678 1.21174 1.02055 1.33882 0.98690 0.92705 1.25013 0.95807 0.96349 0.97161 1.69947 1.28172 1.45771 1.09420 0.86712 0.82990 0.80484 0.78125 1.20284 1.21303 1.20297 1.22045 0.99747 1.01056 0.94008 1.21769 0.86541 0.94014 0.98532 1.42813 1.05138 1.09288 1.54154 0.72489 0.91612 0.87663 0.91447 0.82313 0.82268 0.90458 0.90789 0.89389 0.91961 0.92217 0.96481 0.96577 0.92909 0.90763 0.91829 0.91351 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.55 10.58 -40.83 -0.43 -3.98 16 3 C 0.54 6.11 7.95 34.35 0.27 6.39 16 4 O -0.49 -6.56 16.67 -19.29 -0.32 -6.88 16 5 C -0.02 -0.21 7.07 -82.12 -0.58 -0.79 16 6 C -0.10 -1.11 10.61 -39.23 -0.42 -1.52 16 7 C -0.13 -1.51 10.72 -39.25 -0.42 -1.93 16 8 C 0.02 0.19 6.35 -82.11 -0.52 -0.34 16 9 C 0.58 8.32 7.64 -12.56 -0.10 8.22 16 10 O -0.53 -8.92 16.41 5.27 0.09 -8.83 16 11 N -0.60 -8.08 2.98 -174.34 -0.52 -8.60 16 12 C 0.08 1.02 5.52 -3.93 -0.02 0.99 16 13 C -0.12 -1.89 5.17 -26.84 -0.14 -2.03 16 14 C -0.08 -1.46 2.10 -90.58 -0.19 -1.65 16 15 C 0.03 0.67 4.45 -27.89 -0.12 0.55 16 16 C -0.52 -13.61 8.39 -34.44 -0.29 -13.90 16 17 H 0.05 1.37 7.06 -52.48 -0.37 1.00 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 20 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.13 -2.04 5.36 -26.61 -0.14 -2.18 16 25 C 0.11 1.53 6.43 -3.72 -0.02 1.51 16 26 N -0.51 -5.41 4.75 -5.90 -0.03 -5.44 16 27 H 0.43 3.87 6.45 -40.82 -0.26 3.61 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.08 0.85 3.91 -51.93 -0.20 0.65 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.50 6.91 -51.93 -0.36 1.15 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -32.06 364.62 -7.92 -39.98 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.19 Total: 1.66 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.72 Total: -3.84 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.19 Total: -39.31 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.67 Total: -19.70 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.06 -7.92 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569929502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.315 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds