Wall clock time and date at job start Tue Mar 31 2020 12:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34821 * 116.99455 * 2 1 4 4 O 1.21532 * 120.00295 * 0.02562 * 3 2 1 5 5 C 1.47152 * 119.99635 * 179.97438 * 3 2 1 6 6 C 1.38000 * 125.90882 * 179.69338 * 5 3 2 7 7 C 1.39424 * 107.44674 * 180.26666 * 6 5 3 8 8 C 1.37936 * 107.47199 * 359.97438 * 7 6 5 9 9 C 1.47332 * 125.88612 * 180.02562 * 8 7 6 10 10 O 1.21612 * 120.00061 * 330.79808 * 9 8 7 11 11 N 1.34773 * 120.00301 * 150.79886 * 9 8 7 12 12 C 1.46931 * 120.62946 * 359.85061 * 11 9 8 13 13 C 1.52758 * 109.00664 * 233.58271 * 12 11 9 14 14 C 1.53037 * 109.38666 * 305.58497 * 13 12 11 15 15 C 1.52995 * 109.45349 * 181.25652 * 14 13 12 16 16 C 1.50696 * 109.47331 * 64.93396 * 15 14 13 17 17 H 1.08003 * 120.00107 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00223 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99847 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47238 * 60.00156 * 20 18 16 22 22 H 1.48506 * 109.46825 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47139 * 299.99669 * 20 18 16 24 24 C 1.53044 * 109.53377 * 61.24016 * 14 13 12 25 25 C 1.46920 * 120.63407 * 180.12867 * 11 9 8 26 26 N 1.36704 * 108.22814 * 0.02562 * 8 7 6 27 27 H 0.96999 * 125.66840 * 179.97438 * 26 8 7 28 28 H 1.08998 * 109.47107 * 59.99947 * 1 2 3 29 29 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47382 * 300.00118 * 1 2 3 31 31 H 1.08002 * 126.27384 * 0.28081 * 6 5 3 32 32 H 1.08003 * 126.26079 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.58481 * 353.41395 * 12 11 9 34 34 H 1.08995 * 109.58623 * 113.84218 * 12 11 9 35 35 H 1.09003 * 109.56440 * 185.54718 * 13 12 11 36 36 H 1.09000 * 109.35870 * 65.50201 * 13 12 11 37 37 H 1.09003 * 109.45814 * 301.22484 * 14 13 12 38 38 H 1.08996 * 109.47158 * 184.94211 * 15 14 13 39 39 H 1.09009 * 109.46980 * 304.93724 * 15 14 13 40 40 H 0.97006 * 120.00030 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.49363 * 178.68407 * 24 14 13 42 42 H 1.08993 * 109.50136 * 58.59161 * 24 14 13 43 43 H 1.09006 * 109.58584 * 246.15926 * 25 11 9 44 44 H 1.09003 * 109.58837 * 6.43484 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4020 2.2206 0.0005 5 6 3.5335 1.2784 0.0006 6 6 4.2832 2.4370 -0.0053 7 6 5.6270 2.0653 -0.0086 8 6 5.6754 0.6868 -0.0040 9 6 6.8986 -0.1344 -0.0047 10 8 7.9144 0.2881 -0.5229 11 7 6.8919 -1.3540 0.5689 12 6 5.6734 -1.8769 1.2019 13 6 5.9988 -2.3010 2.6328 14 6 7.1709 -3.2848 2.6170 15 6 7.4779 -3.7348 4.0467 16 6 6.3083 -4.5144 4.5900 17 1 5.4336 -4.6735 3.9767 18 6 6.3548 -5.0247 5.8700 19 7 7.4196 -4.8306 6.6170 20 14 4.9052 -5.9917 6.5432 21 1 4.6663 -7.1837 5.6903 22 1 5.2031 -6.4284 7.9310 23 1 3.6941 -5.1324 6.5434 24 6 8.4043 -2.6018 2.0215 25 6 8.1046 -2.1834 0.5786 26 7 4.3928 0.2139 0.0014 27 1 4.1347 -0.7212 0.0050 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.8993 3.4465 -0.0069 32 1 6.4748 2.7343 -0.0137 33 1 4.9079 -1.1010 1.2173 34 1 5.3117 -2.7389 0.6415 35 1 5.1273 -2.7806 3.0785 36 1 6.2695 -1.4219 3.2176 37 1 6.9086 -4.1525 2.0116 38 1 8.3665 -4.3659 4.0461 39 1 7.6539 -2.8601 4.6730 40 1 7.4522 -5.1893 7.5177 41 1 9.2449 -3.2956 2.0320 42 1 8.6525 -1.7199 2.6119 43 1 7.9451 -3.0710 -0.0337 44 1 8.9423 -1.6106 0.1805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569929502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:57 Heat of formation + Delta-G solvation = -91.968622 kcal Electronic energy + Delta-G solvation = -26986.007594 eV Core-core repulsion = 23096.529331 eV Total energy + Delta-G solvation = -3889.478263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.92416 -41.34359 -40.52013 -38.77338 -37.61394 -35.80775 -34.13651 -32.80529 -32.08431 -31.13097 -29.88243 -28.60137 -26.68687 -25.09216 -24.43498 -23.55770 -22.32951 -21.93907 -21.08605 -20.66705 -19.38087 -18.49158 -18.38517 -17.92649 -17.57354 -17.06346 -16.63336 -16.54802 -15.77779 -15.40975 -15.20565 -15.17961 -14.91998 -14.64499 -14.50334 -14.30812 -14.18173 -13.91847 -13.86867 -13.74725 -13.37137 -13.09217 -12.98837 -12.78832 -12.51114 -12.34946 -12.17870 -11.99109 -11.89513 -11.80335 -11.44855 -11.28187 -11.04862 -10.87054 -10.51343 -10.22208 -9.87429 -9.52169 -8.15569 -6.25225 -0.27524 0.88351 1.39157 1.42482 1.44224 1.51671 1.66742 1.76200 1.92819 2.19733 2.43274 3.18531 3.26123 3.65897 3.72025 3.98931 4.00877 4.06894 4.10076 4.14882 4.27670 4.33549 4.33793 4.39303 4.60050 4.68517 4.72253 4.72564 4.84655 4.89059 4.98149 5.05973 5.13262 5.24059 5.30340 5.33455 5.37213 5.47362 5.56655 5.59565 5.80782 5.89937 5.99633 6.19600 6.29324 6.51179 6.87298 6.91986 7.43883 8.96201 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.003618 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.571740 B = 7737.229985 C = 9787.379248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.540 3.460 4 O -0.517 6.517 5 C -0.020 4.020 6 C -0.104 4.104 7 C -0.133 4.133 8 C 0.000 4.000 9 C 0.584 3.416 10 O -0.558 6.558 11 N -0.599 5.599 12 C 0.092 3.908 13 C -0.113 4.113 14 C -0.073 4.073 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.069 0.931 18 C -0.002 4.002 19 N -0.938 5.938 20 Si 0.958 3.042 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.266 1.266 24 C -0.124 4.124 25 C 0.119 3.881 26 N -0.501 5.501 27 H 0.438 0.562 28 H 0.069 0.931 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.069 0.931 38 H -0.013 1.013 39 H -0.017 1.017 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 9.119 -16.348 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.385 3.615 4 O -0.406 6.406 5 C -0.134 4.134 6 C -0.130 4.130 7 C -0.159 4.159 8 C -0.119 4.119 9 C 0.372 3.628 10 O -0.436 6.436 11 N -0.331 5.331 12 C -0.030 4.030 13 C -0.151 4.151 14 C -0.091 4.091 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.783 3.217 21 H -0.190 1.190 22 H -0.217 1.217 23 H -0.190 1.190 24 C -0.162 4.162 25 C -0.002 4.002 26 N -0.105 5.105 27 H 0.284 0.716 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.084 0.916 31 H 0.192 0.808 32 H 0.185 0.815 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.006 0.994 39 H 0.001 0.999 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.880 9.355 -16.465 21.840 hybrid contribution -0.541 -0.919 1.152 1.570 sum -11.421 8.436 -15.313 20.883 Atomic orbital electron populations 1.23643 0.73422 1.06097 1.03065 1.86546 1.26040 1.31433 1.83982 1.19939 0.86837 0.82088 0.72634 1.90883 1.65724 1.36663 1.47284 1.19571 0.86811 0.88896 1.18164 1.21531 0.91431 0.97935 1.02115 1.21472 0.97906 0.91860 1.04646 1.20536 0.83341 0.94875 1.13154 1.17423 0.86545 0.80437 0.78365 1.90802 1.33766 1.71587 1.47468 1.48194 1.13731 1.16127 1.55005 1.22329 0.85980 1.00495 0.94242 1.21684 0.99737 0.98569 0.95101 1.21045 0.94264 0.97116 0.96699 1.19012 0.95298 0.94149 0.92025 1.21651 1.02846 1.33136 0.98884 0.91265 1.25950 0.98558 0.97653 0.97798 1.70105 1.30576 1.47410 1.09772 0.85604 0.79649 0.79303 0.77127 1.19048 1.21699 1.19043 1.21932 0.98771 1.00154 0.95321 1.21705 0.86824 0.94869 0.96817 1.42687 1.04401 1.09638 1.53766 0.71612 0.91200 0.84880 0.91578 0.80815 0.81484 0.88820 0.87887 0.90162 0.93835 0.91224 0.99423 0.99902 0.93099 0.90507 0.93552 0.88996 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.24 10.58 -57.34 -0.61 -6.84 16 3 C 0.54 11.29 7.95 70.16 0.56 11.84 16 4 O -0.52 -12.98 16.67 19.73 0.33 -12.65 16 5 C -0.02 -0.40 7.07 40.65 0.29 -0.11 16 6 C -0.10 -2.04 10.61 22.50 0.24 -1.80 16 7 C -0.13 -2.82 10.72 22.48 0.24 -2.58 16 8 C 0.00 0.00 6.35 40.71 0.26 0.25 16 9 C 0.58 15.86 7.64 86.64 0.66 16.52 16 10 O -0.56 -18.43 16.41 -4.07 -0.07 -18.50 16 11 N -0.60 -15.03 2.98 -823.73 -2.45 -17.48 16 12 C 0.09 2.03 5.52 86.22 0.48 2.51 16 13 C -0.11 -3.51 5.17 30.53 0.16 -3.35 16 14 C -0.07 -2.59 2.10 -10.77 -0.02 -2.62 16 15 C 0.03 1.59 4.45 29.84 0.13 1.72 16 16 C -0.53 -27.69 8.39 25.60 0.21 -27.47 16 17 H 0.07 3.36 7.06 -2.91 -0.02 3.34 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 19 N -0.94 -56.01 13.29 21.45 0.28 -55.73 16 20 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 C -0.12 -3.84 5.36 30.67 0.16 -3.68 16 25 C 0.12 3.05 6.43 86.36 0.56 3.60 16 26 N -0.50 -9.48 4.75 -172.59 -0.82 -10.30 16 27 H 0.44 6.60 6.45 -92.71 -0.60 6.00 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.09 1.80 3.91 -2.39 -0.01 1.79 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.63 6.91 -2.39 -0.02 2.61 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 40 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 41 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.09 2.35 7.00 -2.39 -0.02 2.33 16 Total: -1.00 -70.32 364.62 4.71 -65.61 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.43 Total: 14.84 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 5.58 Total: -3.29 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.99 Total: -83.51 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.34 Total: -37.99 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -70.32 4.71 -65.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569929502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.355 kcal (2) G-P(sol) polarization free energy of solvation -70.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds