Wall clock time and date at job start Tue Mar 31 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34877 * 116.99822 * 2 1 4 4 O 1.21600 * 120.00263 * 359.97438 * 3 2 1 5 5 C 1.46632 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.36450 * 125.86057 * 179.71959 * 5 3 2 7 7 C 1.41247 * 107.00464 * 180.26717 * 6 5 3 8 8 C 1.47407 * 126.45387 * 179.97438 * 7 6 5 9 9 O 1.21599 * 119.99800 * 209.03525 * 8 7 6 10 10 N 1.34773 * 119.99928 * 29.02471 * 8 7 6 11 11 C 1.46933 * 120.63204 * 6.11594 * 10 8 7 12 12 C 1.53625 * 108.54673 * 126.36132 * 11 10 8 13 13 C 1.53045 * 109.23848 * 54.85340 * 12 11 10 14 14 C 1.53001 * 109.45626 * 178.48799 * 13 12 11 15 15 C 1.50698 * 109.47379 * 295.06908 * 14 13 12 16 16 H 1.07998 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99906 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00282 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00062 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46849 * 60.00440 * 19 17 15 21 21 H 1.48496 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47024 * 300.00158 * 19 17 15 23 23 C 1.53040 * 109.54113 * 298.51311 * 13 12 11 24 24 C 1.46919 * 120.63308 * 186.38695 * 10 8 7 25 25 C 1.38244 * 107.09314 * 359.97438 * 7 6 5 26 26 N 1.34233 * 108.41390 * 0.02562 * 25 7 6 27 27 H 0.96994 * 125.39672 * 180.02562 * 26 25 7 28 28 H 1.09005 * 109.46857 * 60.00473 * 1 2 3 29 29 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47323 * 299.99974 * 1 2 3 31 31 H 1.07998 * 126.49326 * 0.25563 * 6 5 3 32 32 H 1.08995 * 109.58271 * 246.19910 * 11 10 8 33 33 H 1.09001 * 109.58530 * 6.62079 * 11 10 8 34 34 H 1.09003 * 109.63176 * 294.86951 * 12 11 10 35 35 H 1.08998 * 109.43094 * 174.72266 * 12 11 10 36 36 H 1.09005 * 109.44506 * 58.52990 * 13 12 11 37 37 H 1.08999 * 109.46873 * 55.07857 * 14 13 12 38 38 H 1.09003 * 109.46311 * 175.07268 * 14 13 12 39 39 H 0.97005 * 120.00468 * 179.97438 * 18 17 15 40 40 H 1.08989 * 109.49483 * 301.41146 * 23 13 12 41 41 H 1.08998 * 109.49562 * 181.31241 * 23 13 12 42 42 H 1.09000 * 109.58882 * 353.38136 * 24 10 8 43 43 H 1.09002 * 109.58874 * 113.66026 * 24 10 8 44 44 H 1.07994 * 125.79032 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 -0.0005 5 6 3.5286 1.2786 0.0006 6 6 4.2690 2.4247 -0.0048 7 6 5.6277 2.0388 -0.0082 8 6 6.7941 2.9400 -0.0149 9 8 7.8364 2.5816 -0.5284 10 7 6.7053 4.1613 0.5481 11 6 5.4998 4.5586 1.2883 12 6 5.9206 5.0400 2.6852 13 6 6.9647 6.1499 2.5428 14 6 7.3596 6.6592 3.9304 15 6 6.1686 7.3115 4.5839 16 1 5.2243 7.3577 4.0619 17 6 6.2842 7.8481 5.8486 18 7 7.4340 7.7914 6.4845 19 14 4.8077 8.6560 6.6590 20 1 3.7103 7.6642 6.7893 21 1 5.1911 9.1504 8.0058 22 1 4.3481 9.7963 5.8260 23 6 8.2023 5.6001 1.8300 24 6 7.8095 5.1230 0.4283 25 6 5.6575 0.6567 -0.0042 26 7 4.3934 0.2053 0.0009 27 1 4.1302 -0.7283 0.0048 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8881 3.4353 -0.0063 32 1 4.9945 5.3654 0.7575 33 1 4.8299 3.7038 1.3813 34 1 6.3478 4.2085 3.2458 35 1 5.0489 5.4261 3.2135 36 1 6.5449 6.9705 1.9607 37 1 7.6968 5.8224 4.5421 38 1 8.1653 7.3871 3.8344 39 1 7.5155 8.1693 7.3742 40 1 8.6079 4.7635 2.3988 41 1 8.9545 6.3848 1.7498 42 1 8.6642 4.6408 -0.0463 43 1 7.4896 5.9738 -0.1733 44 1 6.5470 0.0442 -0.0050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571089806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:01 Heat of formation + Delta-G solvation = -80.878590 kcal Electronic energy + Delta-G solvation = -26764.358074 eV Core-core repulsion = 22875.360711 eV Total energy + Delta-G solvation = -3888.997363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97540 -40.32346 -39.43762 -37.14762 -36.78341 -34.01378 -32.48869 -31.66600 -30.43927 -30.30196 -28.13767 -27.79393 -24.95019 -23.71406 -23.16643 -22.61695 -21.17973 -20.67140 -19.83353 -19.34815 -18.09644 -17.41403 -16.80606 -16.43589 -16.21602 -15.96489 -15.48213 -15.15633 -14.54726 -14.40869 -14.25693 -14.00389 -13.58962 -13.47184 -13.43400 -13.11809 -12.90443 -12.66379 -12.56451 -12.46707 -12.02466 -11.72628 -11.22601 -11.14285 -11.08253 -10.93367 -10.74851 -10.64813 -10.42238 -10.08076 -9.82246 -9.65233 -9.34259 -9.13280 -8.92878 -8.77333 -8.32521 -8.23291 -5.96992 -3.98849 0.86815 1.68745 2.20639 2.63632 2.67421 3.20228 3.34618 3.39374 3.41485 3.46716 4.42087 4.47897 4.68226 4.69813 4.71143 4.80202 4.88818 5.10635 5.23046 5.35403 5.38083 5.45065 5.52191 5.60314 5.64615 5.76541 5.86294 5.89740 6.06578 6.11673 6.15008 6.28624 6.44889 6.48179 6.59423 6.78201 6.87378 7.03134 7.05866 7.16434 7.35089 7.66734 7.70445 7.85633 8.03111 8.38003 8.45669 9.07644 9.64831 11.14244 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.003298 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.204793 B = 8487.079134 C =10434.156182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.536 3.464 4 O -0.493 6.493 5 C -0.052 4.052 6 C -0.059 4.059 7 C -0.227 4.227 8 C 0.589 3.411 9 O -0.556 6.556 10 N -0.597 5.597 11 C 0.090 3.910 12 C -0.118 4.118 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.129 4.129 24 C 0.113 3.887 25 C 0.109 3.891 26 N -0.519 5.519 27 H 0.428 0.572 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.166 0.834 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -17.975 -14.827 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.381 3.619 4 O -0.380 6.380 5 C -0.160 4.160 6 C -0.084 4.084 7 C -0.237 4.237 8 C 0.378 3.622 9 O -0.436 6.436 10 N -0.329 5.329 11 C -0.033 4.033 12 C -0.156 4.156 13 C -0.100 4.100 14 C -0.009 4.009 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.167 4.167 24 C -0.009 4.009 25 C -0.033 4.033 26 N -0.113 5.113 27 H 0.267 0.733 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.183 0.817 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.101 -17.926 -14.920 25.035 hybrid contribution -1.177 0.163 0.713 1.385 sum -10.278 -17.763 -14.207 24.960 Atomic orbital electron populations 1.23302 0.75304 1.03847 1.03019 1.86528 1.24235 1.32716 1.84895 1.19802 0.86892 0.81873 0.73346 1.90942 1.65276 1.35716 1.46024 1.18902 0.86746 0.88059 1.22309 1.21489 0.91213 0.97770 0.97953 1.19626 0.93365 0.93168 1.17492 1.17311 0.86258 0.80824 0.77811 1.90742 1.30331 1.75023 1.47473 1.47944 1.18580 1.13858 1.52520 1.22487 0.86535 1.00567 0.93668 1.21972 1.00875 0.98806 0.93915 1.21201 0.93310 0.96042 0.99440 1.19118 0.96569 0.95879 0.89339 1.21215 0.96887 1.36819 1.00496 0.92620 1.25016 0.95661 0.96308 0.97465 1.69955 1.24057 1.46046 1.13514 0.86714 0.83193 0.79864 0.78563 1.20281 1.21409 1.20285 1.22015 0.99328 1.00785 0.94549 1.21675 0.89636 0.91260 0.98279 1.22416 0.87200 0.94516 0.99204 1.41720 1.05624 1.09226 1.54763 0.73275 0.91609 0.87921 0.91464 0.81679 0.91488 0.89081 0.92306 0.89806 0.92352 0.96676 0.96626 0.93030 0.92046 0.91180 0.89598 0.91771 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.37 -3.13 10.58 -40.98 -0.43 -3.56 16 3 C 0.54 5.85 7.93 34.12 0.27 6.12 16 4 O -0.49 -6.72 16.65 -19.34 -0.32 -7.05 16 5 C -0.05 -0.53 7.02 -82.43 -0.58 -1.11 16 6 C -0.06 -0.68 8.10 -39.08 -0.32 -1.00 16 7 C -0.23 -2.79 5.56 -105.02 -0.58 -3.37 16 8 C 0.59 9.00 7.62 -12.53 -0.10 8.90 16 9 O -0.56 -9.90 16.44 5.28 0.09 -9.81 16 10 N -0.60 -9.04 2.97 -173.78 -0.52 -9.55 16 11 C 0.09 1.29 5.25 -3.48 -0.02 1.27 16 12 C -0.12 -2.09 5.21 -26.38 -0.14 -2.23 16 13 C -0.08 -1.59 2.10 -90.58 -0.19 -1.78 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 15 C -0.52 -14.10 8.39 -34.44 -0.29 -14.39 16 16 H 0.06 1.46 7.05 -52.49 -0.37 1.09 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.13 -2.20 5.36 -26.61 -0.14 -2.34 16 24 C 0.11 1.72 6.44 -3.71 -0.02 1.70 16 25 C 0.11 0.98 11.83 -16.50 -0.20 0.79 16 26 N -0.52 -3.89 6.01 -9.32 -0.06 -3.95 16 27 H 0.43 1.82 8.96 -40.82 -0.37 1.45 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.17 1.89 6.46 -52.49 -0.34 1.55 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.19 4.15 -51.93 -0.22 0.98 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.58 6.91 -51.93 -0.36 1.23 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 1.10 8.14 -51.94 -0.42 0.68 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.19 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -34.57 364.52 -7.71 -42.28 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.22 Total: -0.18 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.45 Total: -4.06 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.16 Total: -39.57 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.67 Total: -20.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.57 -7.71 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571089806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.598 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds