Wall clock time and date at job start Tue Mar 31 2020 12:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34877 * 116.99822 * 2 1 4 4 O 1.21600 * 120.00263 * 359.97438 * 3 2 1 5 5 C 1.46632 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.36450 * 125.86057 * 179.71959 * 5 3 2 7 7 C 1.41247 * 107.00464 * 180.26717 * 6 5 3 8 8 C 1.47407 * 126.45387 * 179.97438 * 7 6 5 9 9 O 1.21599 * 119.99800 * 209.03525 * 8 7 6 10 10 N 1.34773 * 119.99928 * 29.02471 * 8 7 6 11 11 C 1.46933 * 120.63204 * 6.11594 * 10 8 7 12 12 C 1.53625 * 108.54673 * 126.36132 * 11 10 8 13 13 C 1.53045 * 109.23848 * 54.85340 * 12 11 10 14 14 C 1.53001 * 109.45626 * 178.48799 * 13 12 11 15 15 C 1.50698 * 109.47379 * 295.06908 * 14 13 12 16 16 H 1.07998 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99906 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00282 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00062 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46849 * 60.00440 * 19 17 15 21 21 H 1.48496 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47024 * 300.00158 * 19 17 15 23 23 C 1.53040 * 109.54113 * 298.51311 * 13 12 11 24 24 C 1.46919 * 120.63308 * 186.38695 * 10 8 7 25 25 C 1.38244 * 107.09314 * 359.97438 * 7 6 5 26 26 N 1.34233 * 108.41390 * 0.02562 * 25 7 6 27 27 H 0.96994 * 125.39672 * 180.02562 * 26 25 7 28 28 H 1.09005 * 109.46857 * 60.00473 * 1 2 3 29 29 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47323 * 299.99974 * 1 2 3 31 31 H 1.07998 * 126.49326 * 0.25563 * 6 5 3 32 32 H 1.08995 * 109.58271 * 246.19910 * 11 10 8 33 33 H 1.09001 * 109.58530 * 6.62079 * 11 10 8 34 34 H 1.09003 * 109.63176 * 294.86951 * 12 11 10 35 35 H 1.08998 * 109.43094 * 174.72266 * 12 11 10 36 36 H 1.09005 * 109.44506 * 58.52990 * 13 12 11 37 37 H 1.08999 * 109.46873 * 55.07857 * 14 13 12 38 38 H 1.09003 * 109.46311 * 175.07268 * 14 13 12 39 39 H 0.97005 * 120.00468 * 179.97438 * 18 17 15 40 40 H 1.08989 * 109.49483 * 301.41146 * 23 13 12 41 41 H 1.08998 * 109.49562 * 181.31241 * 23 13 12 42 42 H 1.09000 * 109.58882 * 353.38136 * 24 10 8 43 43 H 1.09002 * 109.58874 * 113.66026 * 24 10 8 44 44 H 1.07994 * 125.79032 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 -0.0005 5 6 3.5286 1.2786 0.0006 6 6 4.2690 2.4247 -0.0048 7 6 5.6277 2.0388 -0.0082 8 6 6.7941 2.9400 -0.0149 9 8 7.8364 2.5816 -0.5284 10 7 6.7053 4.1613 0.5481 11 6 5.4998 4.5586 1.2883 12 6 5.9206 5.0400 2.6852 13 6 6.9647 6.1499 2.5428 14 6 7.3596 6.6592 3.9304 15 6 6.1686 7.3115 4.5839 16 1 5.2243 7.3577 4.0619 17 6 6.2842 7.8481 5.8486 18 7 7.4340 7.7914 6.4845 19 14 4.8077 8.6560 6.6590 20 1 3.7103 7.6642 6.7893 21 1 5.1911 9.1504 8.0058 22 1 4.3481 9.7963 5.8260 23 6 8.2023 5.6001 1.8300 24 6 7.8095 5.1230 0.4283 25 6 5.6575 0.6567 -0.0042 26 7 4.3934 0.2053 0.0009 27 1 4.1302 -0.7283 0.0048 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8881 3.4353 -0.0063 32 1 4.9945 5.3654 0.7575 33 1 4.8299 3.7038 1.3813 34 1 6.3478 4.2085 3.2458 35 1 5.0489 5.4261 3.2135 36 1 6.5449 6.9705 1.9607 37 1 7.6968 5.8224 4.5421 38 1 8.1653 7.3871 3.8344 39 1 7.5155 8.1693 7.3742 40 1 8.6079 4.7635 2.3988 41 1 8.9545 6.3848 1.7498 42 1 8.6642 4.6408 -0.0463 43 1 7.4896 5.9738 -0.1733 44 1 6.5470 0.0442 -0.0050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571089806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:00 Heat of formation + Delta-G solvation = -102.608040 kcal Electronic energy + Delta-G solvation = -26765.300334 eV Core-core repulsion = 22875.360711 eV Total energy + Delta-G solvation = -3889.939623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.78544 -41.19150 -40.54981 -38.53689 -37.56636 -35.68855 -34.12164 -32.93530 -31.54858 -31.17368 -29.77949 -28.50708 -26.55266 -24.62670 -24.51446 -23.89455 -22.56825 -21.50472 -21.01342 -20.43175 -19.24785 -18.38986 -18.17950 -17.57386 -17.46669 -16.77106 -16.55579 -16.52036 -16.19915 -15.45828 -15.24857 -14.96768 -14.83920 -14.67418 -14.50464 -14.35258 -14.20205 -14.03640 -13.74352 -13.41039 -13.27347 -13.06403 -12.94697 -12.67673 -12.46921 -12.28436 -12.10820 -11.93501 -11.87516 -11.75257 -11.33927 -11.12454 -10.90035 -10.82107 -10.50315 -10.14559 -9.67180 -9.43445 -8.14568 -6.23944 0.07711 0.77208 1.42324 1.44703 1.50632 1.52120 1.84261 1.89342 2.15477 2.40268 2.44320 3.18943 3.61462 3.76871 3.96281 4.04949 4.08524 4.11880 4.18028 4.23935 4.28927 4.33785 4.44625 4.48357 4.63365 4.70233 4.72438 4.77554 4.86377 4.93483 5.01606 5.13278 5.17641 5.27184 5.34823 5.35929 5.40951 5.50143 5.57855 5.66547 5.84706 5.92099 6.29455 6.31494 6.50181 6.57485 6.92726 7.21512 7.44619 8.97230 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.003298 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.204793 B = 8487.079134 C =10434.156182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.539 3.461 4 O -0.527 6.527 5 C -0.057 4.057 6 C -0.068 4.068 7 C -0.260 4.260 8 C 0.588 3.412 9 O -0.586 6.586 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.112 4.112 13 C -0.073 4.073 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.267 1.267 23 C -0.121 4.121 24 C 0.120 3.880 25 C 0.135 3.865 26 N -0.496 5.496 27 H 0.446 0.554 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.062 0.938 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.063 0.937 37 H -0.016 1.016 38 H -0.013 1.013 39 H 0.261 0.739 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 -19.555 -15.955 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.277 6.277 3 C 0.385 3.615 4 O -0.416 6.416 5 C -0.166 4.166 6 C -0.093 4.093 7 C -0.268 4.268 8 C 0.379 3.621 9 O -0.468 6.468 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.150 4.150 13 C -0.092 4.092 14 C -0.004 4.004 15 C -0.565 4.565 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.578 5.578 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.192 1.192 23 C -0.159 4.159 24 C -0.003 4.003 25 C -0.010 4.010 26 N -0.091 5.091 27 H 0.289 0.711 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.081 0.919 31 H 0.180 0.820 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.002 0.998 38 H 0.005 0.995 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.112 -19.549 -16.062 27.633 hybrid contribution -0.553 0.570 1.066 1.330 sum -11.665 -18.979 -14.995 26.854 Atomic orbital electron populations 1.23610 0.73759 1.06035 1.02804 1.86524 1.25692 1.31248 1.84237 1.19878 0.87036 0.82029 0.72519 1.90926 1.66016 1.36913 1.47764 1.18799 0.86841 0.88485 1.22434 1.21478 0.91187 0.98264 0.98406 1.19471 0.92463 0.94210 1.20680 1.17698 0.86690 0.80753 0.76935 1.90718 1.31765 1.75516 1.48830 1.48009 1.18567 1.14117 1.52643 1.22419 0.86475 1.01710 0.91390 1.21855 0.99565 0.97534 0.96074 1.21048 0.94992 0.96882 0.96280 1.19011 0.95215 0.93979 0.92167 1.21649 0.97754 1.36315 1.00813 0.91610 1.25950 0.98611 0.97084 0.98343 1.70104 1.26439 1.47355 1.13936 0.85592 0.79542 0.79121 0.77360 1.19131 1.21360 1.19182 1.21896 0.98189 1.00258 0.95547 1.21591 0.90027 0.91946 0.96692 1.22779 0.88268 0.93613 0.96311 1.41672 1.04721 1.09729 1.53000 0.71087 0.91679 0.84536 0.91918 0.82043 0.89904 0.87431 0.93712 0.90975 0.91886 0.99754 0.99458 0.93050 0.93496 0.90863 0.89634 0.89973 0.76560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.50 16 2 O -0.36 -5.32 10.58 -57.91 -0.61 -5.94 16 3 C 0.54 10.91 7.93 70.01 0.56 11.46 16 4 O -0.53 -13.95 16.65 19.51 0.32 -13.62 16 5 C -0.06 -1.05 7.02 39.97 0.28 -0.77 16 6 C -0.07 -1.47 8.10 22.59 0.18 -1.29 16 7 C -0.26 -5.90 5.56 -20.12 -0.11 -6.01 16 8 C 0.59 17.32 7.62 86.66 0.66 17.98 16 9 O -0.59 -20.35 16.44 -4.03 -0.07 -20.41 16 10 N -0.60 -17.64 2.97 -821.97 -2.44 -20.08 16 11 C 0.10 2.82 5.25 86.51 0.45 3.28 16 12 C -0.11 -3.99 5.21 30.82 0.16 -3.83 16 13 C -0.07 -2.91 2.10 -10.76 -0.02 -2.93 16 14 C 0.03 1.74 4.45 29.85 0.13 1.87 16 15 C -0.53 -29.27 8.39 25.60 0.21 -29.05 16 16 H 0.07 3.44 7.05 -2.91 -0.02 3.42 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.94 -57.54 13.29 21.44 0.28 -57.26 16 19 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 24 C 0.12 3.54 6.44 86.36 0.56 4.09 16 25 C 0.14 2.04 11.83 84.33 1.00 3.04 16 26 N -0.50 -5.92 6.01 -183.40 -1.10 -7.02 16 27 H 0.45 2.16 8.96 -92.71 -0.83 1.33 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.16 3.52 6.46 -2.91 -0.02 3.51 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.11 2.68 4.15 -2.39 -0.01 2.67 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.72 6.91 -2.39 -0.02 2.71 16 36 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 37 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.09 2.58 7.00 -2.39 -0.02 2.56 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.22 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -76.52 364.52 4.50 -72.02 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.20 Total: 10.48 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.89 Total: -4.37 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -3.26 Total: -84.36 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.35 Total: -39.97 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.52 4.50 -72.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571089806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.588 kcal (2) G-P(sol) polarization free energy of solvation -76.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds