Wall clock time and date at job start Tue Mar 31 2020 13:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39755 * 125.83369 * 2 1 4 4 C 1.36112 * 107.82451 * 180.14148 * 3 2 1 5 5 N 1.39478 * 126.21643 * 179.90131 * 4 3 2 6 6 C 1.34768 * 120.00252 * 359.68950 * 5 4 3 7 7 O 1.21298 * 119.99614 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00530 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47354 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.13089 * 304.48093 * 9 8 6 11 11 C 1.52927 * 109.30071 * 184.99752 * 9 8 6 12 12 C 1.53342 * 108.67632 * 188.93924 * 11 9 8 13 13 C 1.53066 * 108.42643 * 67.52996 * 12 11 9 14 14 C 1.50178 * 109.89234 * 311.09905 * 13 12 11 15 15 O 1.21278 * 118.24351 * 197.60145 * 14 13 12 16 16 N 1.33349 * 123.50579 * 17.58818 * 14 13 12 17 17 N 1.35257 * 107.56670 * 359.64057 * 4 3 2 18 18 C 1.46499 * 126.04818 * 180.22847 * 17 4 3 19 19 C 1.50703 * 109.47474 * 89.99985 * 18 17 4 20 20 H 1.08004 * 119.99652 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00381 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00151 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47021 * 60.00105 * 23 21 19 25 25 H 1.48501 * 109.47098 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47346 * 299.99964 * 23 21 19 27 27 N 1.30840 * 125.83678 * 179.73775 * 2 1 3 28 28 H 1.09003 * 109.47103 * 270.24194 * 1 2 3 29 29 H 1.09001 * 109.47237 * 30.23874 * 1 2 3 30 30 H 1.09000 * 109.47056 * 150.23865 * 1 2 3 31 31 H 1.07998 * 126.09430 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99488 * 179.68891 * 5 4 3 33 33 H 1.09001 * 109.47088 * 59.99981 * 8 6 5 34 34 H 1.09000 * 109.46658 * 300.00017 * 8 6 5 35 35 H 1.09001 * 109.60412 * 308.69416 * 11 9 8 36 36 H 1.09000 * 109.59878 * 69.18030 * 11 9 8 37 37 H 1.08994 * 109.67342 * 187.26843 * 12 11 9 38 38 H 1.09004 * 109.66885 * 307.75965 * 12 11 9 39 39 H 1.09000 * 109.39830 * 71.23169 * 13 12 11 40 40 H 1.09004 * 109.39855 * 190.97343 * 13 12 11 41 41 H 0.97004 * 117.94466 * 177.77479 * 16 14 13 42 42 H 1.09000 * 109.47214 * 209.99853 * 18 17 4 43 43 H 1.09003 * 109.47431 * 329.99777 * 18 17 4 44 44 H 0.97003 * 120.00020 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7122 -0.0032 5 7 4.7512 1.5276 -0.0062 6 6 4.6157 2.8684 -0.0125 7 8 3.5095 3.3661 -0.0159 8 6 5.8383 3.7494 -0.0151 9 6 5.4088 5.2179 -0.0229 10 1 4.7501 5.3929 -0.8735 11 6 6.6470 6.1060 -0.1514 12 6 6.2294 7.5653 0.0667 13 6 5.8024 7.7332 1.5270 14 6 4.8392 6.6452 1.9061 15 8 4.1583 6.8012 2.8975 16 7 4.6924 5.5168 1.2108 17 7 3.6092 -0.6403 0.0030 18 6 4.7870 -1.5115 0.0070 19 6 5.1909 -1.8038 1.4291 20 1 4.6268 -1.3824 2.2481 21 6 6.2809 -2.6083 1.6848 22 7 6.9687 -3.1203 0.6875 23 14 6.7819 -2.9700 3.4476 24 1 5.6632 -3.6475 4.1510 25 1 7.9757 -3.8532 3.4516 26 1 7.1047 -1.6974 4.1415 27 7 2.2731 -1.0607 0.0049 28 1 -0.3633 0.0043 1.0277 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5101 31 1 1.9902 2.1597 0.0004 32 1 5.6358 1.1295 -0.0038 33 1 6.4344 3.5410 -0.9036 34 1 6.4324 3.5490 0.8764 35 1 7.3821 5.8197 0.6009 36 1 7.0762 5.9933 -1.1470 37 1 7.0711 8.2238 -0.1476 38 1 5.3952 7.8103 -0.5907 39 1 6.6811 7.6791 2.1697 40 1 5.3214 8.7031 1.6543 41 1 4.0697 4.8534 1.5470 42 1 4.5499 -2.4454 -0.5026 43 1 5.6084 -1.0144 -0.5091 44 1 7.7354 -3.6866 0.8674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574309501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:05 Heat of formation + Delta-G solvation = -11.572022 kcal Electronic energy + Delta-G solvation = -26924.071861 eV Core-core repulsion = 23070.372607 eV Total energy + Delta-G solvation = -3853.699254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09661 -40.45428 -39.18732 -36.86936 -34.84016 -33.83172 -33.44316 -32.14308 -31.57788 -29.29597 -28.69633 -27.44154 -26.07603 -24.02033 -22.98711 -22.65082 -21.27518 -19.79686 -19.39855 -19.28323 -17.43621 -17.08245 -16.75430 -16.52926 -16.27051 -15.60884 -15.36578 -15.01720 -14.65608 -14.34099 -14.14538 -14.12139 -13.95235 -13.55711 -13.31929 -12.88501 -12.80780 -12.54340 -12.43438 -12.04154 -11.87265 -11.84356 -11.63083 -11.56189 -11.37212 -11.34015 -11.13497 -10.91181 -10.47068 -10.37929 -10.02583 -9.87383 -9.82449 -9.57004 -9.17464 -8.76232 -7.97024 -7.50037 -6.38019 -4.46816 2.13333 2.55451 2.73077 3.03645 3.15177 3.18292 3.20035 3.24972 3.55075 3.70961 4.15077 4.20189 4.27968 4.33111 4.47981 4.66789 4.80659 4.90184 4.95396 5.11129 5.15582 5.25354 5.32799 5.40520 5.51016 5.53075 5.58893 5.60776 5.84013 6.01874 6.12183 6.13007 6.21147 6.35983 6.61042 6.75442 6.77841 6.99195 7.30373 7.45558 7.52565 7.56775 7.74646 7.82738 8.15137 8.20538 8.57121 8.66125 9.21190 10.68994 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.003602 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.656355 B = 7771.585019 C = 9196.167976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.293 4.293 4 C 0.298 3.702 5 N -0.637 5.637 6 C 0.516 3.484 7 O -0.516 6.516 8 C -0.154 4.154 9 C 0.158 3.842 10 H 0.087 0.913 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.136 4.136 14 C 0.516 3.484 15 O -0.562 6.562 16 N -0.708 5.708 17 N -0.344 5.344 18 C 0.257 3.743 19 C -0.542 4.542 20 H 0.064 0.936 21 C 0.068 3.932 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.285 5.285 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.417 0.583 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.407 0.593 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 18.271 -5.425 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.325 4.325 4 C 0.076 3.924 5 N -0.284 5.284 6 C 0.303 3.697 7 O -0.391 6.391 8 C -0.194 4.194 9 C 0.052 3.948 10 H 0.105 0.895 11 C -0.172 4.172 12 C -0.161 4.161 13 C -0.176 4.176 14 C 0.303 3.697 15 O -0.441 6.441 16 N -0.362 5.362 17 N -0.129 5.129 18 C 0.139 3.861 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.110 5.110 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.254 0.746 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.246 0.754 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.709 17.412 -5.054 18.211 hybrid contribution 0.892 -0.213 1.005 1.360 sum 2.601 17.200 -4.050 17.861 Atomic orbital electron populations 1.20025 0.87575 1.02332 1.02204 1.22038 0.96541 0.91049 1.01792 1.21271 0.89040 1.00456 1.21755 1.17944 0.88020 0.83391 1.03079 1.42807 1.08373 1.05643 1.71526 1.20591 0.91462 0.81502 0.76155 1.90658 1.26791 1.73611 1.47993 1.22148 0.96723 0.94080 1.06483 1.20713 0.93863 0.92093 0.88172 0.89532 1.21976 0.96690 0.94681 1.03855 1.21647 1.02216 0.96510 0.95680 1.21660 0.99598 0.98341 0.98004 1.20179 0.83528 0.83179 0.82821 1.90768 1.46617 1.79394 1.27333 1.45708 1.44878 1.20166 1.25475 1.49361 1.06549 1.02195 1.54817 1.19612 0.77784 0.89781 0.98887 1.21306 1.13330 1.32100 0.91319 0.91773 1.24925 0.95654 0.94800 0.98213 1.69905 1.19135 1.32506 1.31215 0.86409 0.78138 0.78529 0.83620 1.19828 1.20857 1.19983 1.77365 0.86140 1.21825 1.25676 0.91282 0.91140 0.91544 0.82108 0.74607 0.86591 0.87409 0.90436 0.89327 0.90302 0.90890 0.88304 0.88293 0.75419 0.92554 0.93846 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.01 7.21 -82.45 -0.59 0.41 16 3 C -0.29 -5.86 9.58 -39.78 -0.38 -6.24 16 4 C 0.30 6.04 7.66 -153.16 -1.17 4.87 16 5 N -0.64 -10.13 5.41 -11.46 -0.06 -10.20 16 6 C 0.52 6.93 7.44 -10.99 -0.08 6.85 16 7 O -0.52 -8.22 11.62 5.54 0.06 -8.15 16 8 C -0.15 -1.27 5.35 -27.89 -0.15 -1.42 16 9 C 0.16 1.29 2.65 -68.37 -0.18 1.11 16 10 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 11 C -0.13 -0.71 5.30 -26.59 -0.14 -0.85 16 12 C -0.12 -0.66 6.03 -26.52 -0.16 -0.82 16 13 C -0.14 -1.05 6.03 -28.10 -0.17 -1.22 16 14 C 0.52 6.38 7.71 -11.87 -0.09 6.28 16 15 O -0.56 -9.66 17.78 5.56 0.10 -9.56 16 16 N -0.71 -8.13 5.00 -54.85 -0.27 -8.40 16 17 N -0.34 -7.89 3.60 -61.57 -0.22 -8.11 16 18 C 0.26 6.28 6.01 -5.19 -0.03 6.25 16 19 C -0.54 -14.34 9.39 -34.44 -0.32 -14.67 16 20 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 23 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 N -0.28 -6.58 12.56 33.65 0.42 -6.16 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.16 3.10 5.83 -52.49 -0.31 2.80 16 32 H 0.42 6.06 7.96 -40.82 -0.33 5.74 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.41 5.67 6.84 -40.82 -0.28 5.39 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -34.07 366.27 -8.26 -42.33 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.33 Total: 8.74 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.20 Total: 1.69 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.60 Total: -56.01 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.16 Total: -17.71 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.07 -8.26 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574309501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.758 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds