Wall clock time and date at job start Tue Mar 31 2020 13:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39755 * 125.83369 * 2 1 4 4 C 1.36112 * 107.82451 * 180.14148 * 3 2 1 5 5 N 1.39478 * 126.21643 * 179.90131 * 4 3 2 6 6 C 1.34768 * 120.00252 * 359.68950 * 5 4 3 7 7 O 1.21298 * 119.99614 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00530 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47354 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.13089 * 304.48093 * 9 8 6 11 11 C 1.52927 * 109.30071 * 184.99752 * 9 8 6 12 12 C 1.53342 * 108.67632 * 188.93924 * 11 9 8 13 13 C 1.53066 * 108.42643 * 67.52996 * 12 11 9 14 14 C 1.50178 * 109.89234 * 311.09905 * 13 12 11 15 15 O 1.21278 * 118.24351 * 197.60145 * 14 13 12 16 16 N 1.33349 * 123.50579 * 17.58818 * 14 13 12 17 17 N 1.35257 * 107.56670 * 359.64057 * 4 3 2 18 18 C 1.46499 * 126.04818 * 180.22847 * 17 4 3 19 19 C 1.50703 * 109.47474 * 89.99985 * 18 17 4 20 20 H 1.08004 * 119.99652 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00381 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00151 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47021 * 60.00105 * 23 21 19 25 25 H 1.48501 * 109.47098 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47346 * 299.99964 * 23 21 19 27 27 N 1.30840 * 125.83678 * 179.73775 * 2 1 3 28 28 H 1.09003 * 109.47103 * 270.24194 * 1 2 3 29 29 H 1.09001 * 109.47237 * 30.23874 * 1 2 3 30 30 H 1.09000 * 109.47056 * 150.23865 * 1 2 3 31 31 H 1.07998 * 126.09430 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99488 * 179.68891 * 5 4 3 33 33 H 1.09001 * 109.47088 * 59.99981 * 8 6 5 34 34 H 1.09000 * 109.46658 * 300.00017 * 8 6 5 35 35 H 1.09001 * 109.60412 * 308.69416 * 11 9 8 36 36 H 1.09000 * 109.59878 * 69.18030 * 11 9 8 37 37 H 1.08994 * 109.67342 * 187.26843 * 12 11 9 38 38 H 1.09004 * 109.66885 * 307.75965 * 12 11 9 39 39 H 1.09000 * 109.39830 * 71.23169 * 13 12 11 40 40 H 1.09004 * 109.39855 * 190.97343 * 13 12 11 41 41 H 0.97004 * 117.94466 * 177.77479 * 16 14 13 42 42 H 1.09000 * 109.47214 * 209.99853 * 18 17 4 43 43 H 1.09003 * 109.47431 * 329.99777 * 18 17 4 44 44 H 0.97003 * 120.00020 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7122 -0.0032 5 7 4.7512 1.5276 -0.0062 6 6 4.6157 2.8684 -0.0125 7 8 3.5095 3.3661 -0.0159 8 6 5.8383 3.7494 -0.0151 9 6 5.4088 5.2179 -0.0229 10 1 4.7501 5.3929 -0.8735 11 6 6.6470 6.1060 -0.1514 12 6 6.2294 7.5653 0.0667 13 6 5.8024 7.7332 1.5270 14 6 4.8392 6.6452 1.9061 15 8 4.1583 6.8012 2.8975 16 7 4.6924 5.5168 1.2108 17 7 3.6092 -0.6403 0.0030 18 6 4.7870 -1.5115 0.0070 19 6 5.1909 -1.8038 1.4291 20 1 4.6268 -1.3824 2.2481 21 6 6.2809 -2.6083 1.6848 22 7 6.9687 -3.1203 0.6875 23 14 6.7819 -2.9700 3.4476 24 1 5.6632 -3.6475 4.1510 25 1 7.9757 -3.8532 3.4516 26 1 7.1047 -1.6974 4.1415 27 7 2.2731 -1.0607 0.0049 28 1 -0.3633 0.0043 1.0277 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5101 31 1 1.9902 2.1597 0.0004 32 1 5.6358 1.1295 -0.0038 33 1 6.4344 3.5410 -0.9036 34 1 6.4324 3.5490 0.8764 35 1 7.3821 5.8197 0.6009 36 1 7.0762 5.9933 -1.1470 37 1 7.0711 8.2238 -0.1476 38 1 5.3952 7.8103 -0.5907 39 1 6.6811 7.6791 2.1697 40 1 5.3214 8.7031 1.6543 41 1 4.0697 4.8534 1.5470 42 1 4.5499 -2.4454 -0.5026 43 1 5.6084 -1.0144 -0.5091 44 1 7.7354 -3.6866 0.8674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574309501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:05 Heat of formation + Delta-G solvation = -35.573311 kcal Electronic energy + Delta-G solvation = -26925.112635 eV Core-core repulsion = 23070.372607 eV Total energy + Delta-G solvation = -3854.740028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.47246 -41.48648 -40.38551 -37.75617 -36.27152 -35.60424 -34.08637 -33.85427 -32.49458 -30.81027 -30.02679 -28.38815 -27.82095 -24.98031 -24.53598 -23.49668 -22.45405 -21.25105 -20.68487 -20.00836 -18.90334 -18.39150 -18.29539 -17.62646 -17.31137 -16.80195 -16.49193 -16.38585 -16.10056 -15.66461 -15.38580 -15.09783 -14.61448 -14.47495 -14.45963 -14.29256 -14.05310 -14.00404 -13.64745 -13.40054 -13.15609 -13.07655 -12.88966 -12.72655 -12.57182 -12.30849 -12.23211 -11.93648 -11.86072 -11.76721 -11.70773 -11.44628 -10.95209 -10.77748 -10.73253 -10.08873 -9.64677 -9.07111 -8.38201 -6.55548 0.78774 1.33870 1.35703 1.38481 1.46896 1.62696 1.65554 2.05577 2.19874 2.34328 2.36304 2.92372 3.38467 3.59948 3.69002 3.82381 3.97159 4.00725 4.19468 4.27812 4.29776 4.56189 4.61189 4.65844 4.71423 4.72717 4.82699 4.86309 4.89295 4.93964 4.94690 5.02999 5.13900 5.16358 5.19836 5.22953 5.41660 5.49168 5.75452 5.76241 5.94514 6.16701 6.27526 6.45743 6.55449 6.94978 7.03597 7.16741 7.22049 8.67933 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.003602 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.656355 B = 7771.585019 C = 9196.167976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.056 3.944 3 C -0.308 4.308 4 C 0.300 3.700 5 N -0.638 5.638 6 C 0.514 3.486 7 O -0.541 6.541 8 C -0.142 4.142 9 C 0.153 3.847 10 H 0.083 0.917 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.130 4.130 14 C 0.507 3.493 15 O -0.624 6.624 16 N -0.711 5.711 17 N -0.367 5.367 18 C 0.273 3.727 19 C -0.558 4.558 20 H 0.044 0.956 21 C 0.032 3.968 22 N -0.911 5.911 23 Si 0.965 3.035 24 H -0.281 1.281 25 H -0.270 1.270 26 H -0.266 1.266 27 N -0.334 5.334 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.423 0.577 33 H 0.157 0.843 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.390 0.610 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 19.970 -5.957 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C -0.340 4.340 4 C 0.077 3.923 5 N -0.286 5.286 6 C 0.303 3.697 7 O -0.417 6.417 8 C -0.182 4.182 9 C 0.048 3.952 10 H 0.101 0.899 11 C -0.166 4.166 12 C -0.155 4.155 13 C -0.170 4.170 14 C 0.296 3.704 15 O -0.507 6.507 16 N -0.361 5.361 17 N -0.152 5.152 18 C 0.154 3.846 19 C -0.596 4.596 20 H 0.063 0.937 21 C -0.171 4.171 22 N -0.549 5.549 23 Si 0.790 3.210 24 H -0.207 1.207 25 H -0.195 1.195 26 H -0.191 1.191 27 N -0.159 5.159 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.185 0.815 32 H 0.261 0.739 33 H 0.174 0.826 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.226 0.774 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.652 19.134 -5.638 20.279 hybrid contribution 0.218 -0.692 1.124 1.338 sum 3.870 18.442 -4.514 19.377 Atomic orbital electron populations 1.20215 0.84166 1.04016 1.03561 1.22868 0.98667 0.90240 0.99113 1.21472 0.89152 1.00713 1.22647 1.18366 0.89776 0.82818 1.01357 1.43088 1.07408 1.06176 1.71926 1.21687 0.92917 0.80726 0.74369 1.90639 1.28539 1.73729 1.48775 1.22279 0.94363 0.92546 1.08966 1.21006 0.95119 0.92690 0.86392 0.89862 1.22029 0.95007 0.93580 1.05940 1.21670 1.03147 0.97227 0.93445 1.21710 0.98743 0.96317 1.00218 1.21103 0.83465 0.83962 0.81857 1.90729 1.49257 1.80659 1.30086 1.45938 1.44393 1.19485 1.26246 1.49168 1.06224 1.03020 1.56826 1.19218 0.78654 0.89034 0.97651 1.21369 1.13703 1.32871 0.91677 0.93735 1.25614 0.95359 0.94240 1.01848 1.69970 1.19414 1.32636 1.32884 0.85498 0.77766 0.78690 0.79084 1.20656 1.19481 1.19064 1.77305 0.86600 1.23676 1.28339 0.89940 0.88647 0.90650 0.81478 0.73913 0.82583 0.86086 0.89539 0.86318 0.87445 0.91187 0.86728 0.88052 0.77423 0.95649 0.92971 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.44 71.24 0.74 -1.01 16 2 C 0.06 2.26 7.21 43.07 0.31 2.57 16 3 C -0.31 -12.42 9.58 22.14 0.21 -12.21 16 4 C 0.30 12.34 7.66 131.32 1.01 13.35 16 5 N -0.64 -20.08 5.41 -308.57 -1.67 -21.75 16 6 C 0.51 13.26 7.44 87.66 0.65 13.91 16 7 O -0.54 -17.11 11.62 -3.09 -0.04 -17.15 16 8 C -0.14 -1.94 5.35 29.85 0.16 -1.78 16 9 C 0.15 2.12 2.65 45.11 0.12 2.24 16 10 H 0.08 1.25 7.96 -2.39 -0.02 1.23 16 11 C -0.13 -0.80 5.30 30.68 0.16 -0.64 16 12 C -0.12 -0.82 6.03 30.73 0.19 -0.63 16 13 C -0.13 -1.75 6.03 29.71 0.18 -1.57 16 14 C 0.51 12.40 7.71 87.72 0.68 13.08 16 15 O -0.62 -22.25 17.78 -3.02 -0.05 -22.31 16 16 N -0.71 -15.88 5.00 -446.65 -2.23 -18.12 16 17 N -0.37 -17.37 3.60 -348.71 -1.26 -18.63 16 18 C 0.27 13.79 6.01 85.63 0.51 14.31 16 19 C -0.56 -30.16 9.39 25.60 0.24 -29.92 16 20 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 21 C 0.03 1.65 5.46 84.65 0.46 2.11 16 22 N -0.91 -48.85 13.29 21.45 0.28 -48.57 16 23 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 N -0.33 -15.91 12.56 -47.45 -0.60 -16.50 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.17 6.48 5.83 -2.91 -0.02 6.46 16 32 H 0.42 12.04 7.96 -92.71 -0.74 11.31 16 33 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 0.46 8.11 -2.39 -0.02 0.44 16 36 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.07 0.56 8.13 -2.38 -0.02 0.54 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.39 11.11 6.84 -92.71 -0.63 10.47 16 42 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 2.49 7.50 -2.39 -0.02 2.47 16 44 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -78.21 366.27 1.76 -76.46 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.33 Total: 29.05 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 5.62 Total: 13.80 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.47 Total: -123.57 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.09 Total: -39.45 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -78.21 1.76 -76.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574309501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.885 kcal (2) G-P(sol) polarization free energy of solvation -78.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds