Wall clock time and date at job start Tue Mar 31 2020 13:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39751 * 125.83749 * 2 1 4 4 C 1.36107 * 107.82671 * 179.97438 * 3 2 1 5 5 N 1.39480 * 126.21973 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99255 * 0.02858 * 5 4 3 7 7 O 1.21287 * 120.00617 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99697 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.60306 * 264.50688 * 8 6 5 10 10 C 1.52990 * 109.60704 * 144.01071 * 8 6 5 11 11 C 1.51779 * 110.87612 * 326.70971 * 10 8 6 12 12 C 1.51762 * 113.82417 * 293.01499 * 11 10 8 13 13 C 1.53058 * 110.76611 * 66.78411 * 12 11 10 14 14 C 1.51423 * 108.48903 * 275.10269 * 13 12 11 15 15 O 1.21281 * 119.89390 * 251.21397 * 14 13 12 16 16 N 1.33372 * 120.21593 * 71.24840 * 14 13 12 17 17 N 1.35267 * 107.56918 * 0.26345 * 4 3 2 18 18 C 1.46492 * 126.04728 * 179.73681 * 17 4 3 19 19 C 1.50700 * 109.47067 * 90.00244 * 18 17 4 20 20 H 1.07995 * 120.00135 * 359.97438 * 19 18 17 21 21 C 1.37888 * 120.00004 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99746 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46943 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47234 * 120.00095 * 23 21 19 26 26 H 1.48500 * 109.46663 * 239.99936 * 23 21 19 27 27 N 1.30849 * 125.83544 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46898 * 90.00000 * 1 2 3 29 29 H 1.09003 * 109.46821 * 209.99811 * 1 2 3 30 30 H 1.08998 * 109.46918 * 329.99534 * 1 2 3 31 31 H 1.07994 * 126.08734 * 359.94424 * 3 2 1 32 32 H 0.96996 * 120.00356 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.19334 * 87.06737 * 10 8 6 34 34 H 1.09000 * 109.19646 * 206.39790 * 10 8 6 35 35 H 1.08997 * 108.61655 * 54.11924 * 11 10 8 36 36 H 1.09006 * 108.61509 * 172.02645 * 11 10 8 37 37 H 1.09001 * 109.19366 * 306.45953 * 12 11 10 38 38 H 1.09001 * 109.23193 * 187.12933 * 12 11 10 39 39 H 1.08996 * 109.63620 * 155.40248 * 13 12 11 40 40 H 1.08996 * 109.63020 * 34.80395 * 13 12 11 41 41 H 0.96999 * 119.78735 * 180.27369 * 16 14 13 42 42 H 1.09002 * 109.47123 * 210.00221 * 18 17 4 43 43 H 1.09006 * 109.47384 * 330.00154 * 18 17 4 44 44 H 0.97006 * 119.99707 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6196 0.7121 0.0006 5 7 4.7513 1.5274 0.0003 6 6 4.6157 2.8683 -0.0001 7 8 3.5097 3.3660 -0.0006 8 6 5.8384 3.7493 0.0002 9 1 6.0773 4.0431 1.0223 10 6 5.5736 4.9953 -0.8471 11 6 4.6535 4.6728 -2.0104 12 6 5.2715 3.7478 -3.0426 13 6 5.5039 2.3546 -2.4529 14 6 6.8349 2.3548 -1.7308 15 8 7.7765 1.7503 -2.1988 16 7 6.9750 3.0168 -0.5815 17 7 3.6092 -0.6405 -0.0050 18 6 4.7870 -1.5116 -0.0119 19 6 5.1948 -1.8163 1.4065 20 1 4.6331 -1.4021 2.2307 21 6 6.2851 -2.6239 1.6521 22 7 6.9687 -3.1287 0.6484 23 14 6.7901 -3.0021 3.4103 24 1 5.8645 -2.3185 4.3491 25 1 6.7325 -4.4684 3.6374 26 1 8.1752 -2.5193 3.6421 27 7 2.2731 -1.0608 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.9902 2.1596 -0.0008 32 1 5.6359 1.1294 0.0004 33 1 5.1094 5.7601 -0.2244 34 1 6.5199 5.3736 -1.2338 35 1 3.7502 4.2040 -1.6200 36 1 4.3758 5.6047 -2.5031 37 1 6.2248 4.1624 -3.3703 38 1 4.6024 3.6677 -3.8994 39 1 5.5221 1.6160 -3.2542 40 1 4.7058 2.1169 -1.7497 41 1 7.8315 3.0161 -0.1263 42 1 4.5484 -2.4411 -0.5290 43 1 5.6070 -1.0100 -0.5260 44 1 7.7356 -3.6972 0.8212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575452040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:41 Heat of formation + Delta-G solvation = 25.710649 kcal Electronic energy + Delta-G solvation = -28764.762225 eV Core-core repulsion = 24912.679670 eV Total energy + Delta-G solvation = -3852.082556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98388 -40.38115 -38.90616 -36.34173 -35.18672 -34.14143 -33.80686 -32.13061 -31.15542 -29.30040 -28.58469 -26.94775 -26.07071 -24.67636 -23.08624 -22.47135 -20.68737 -20.19909 -19.81311 -18.97077 -17.86294 -17.45023 -16.97556 -16.57819 -15.88073 -15.65209 -15.10626 -14.95830 -14.45605 -14.35197 -14.30815 -14.01798 -13.82311 -13.39132 -13.01663 -12.85591 -12.80568 -12.70820 -12.56145 -12.11082 -11.84457 -11.82629 -11.60907 -11.21426 -11.06290 -10.97321 -10.92441 -10.73365 -10.36310 -10.33174 -10.03113 -9.81931 -9.80933 -9.69212 -9.25010 -8.73165 -7.98149 -7.54516 -6.33261 -4.42700 1.95943 2.45494 2.68862 2.92478 3.05695 3.14352 3.23052 3.27947 3.48832 3.66894 4.22220 4.26386 4.31742 4.46332 4.62794 4.76899 4.94386 4.99681 5.07489 5.29679 5.32295 5.48058 5.55166 5.55994 5.75795 5.79072 5.93558 5.97745 5.98459 6.01620 6.09178 6.15274 6.24881 6.38434 6.54216 6.60313 6.80632 6.97394 7.00891 7.37458 7.47110 7.57764 7.74161 7.78501 8.08691 8.10937 8.56285 8.67071 9.24947 10.73915 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.005670 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.087571 B = 4937.048122 C = 6492.697937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.292 4.292 4 C 0.294 3.706 5 N -0.640 5.640 6 C 0.517 3.483 7 O -0.497 6.497 8 C 0.130 3.870 9 H 0.133 0.867 10 C -0.114 4.114 11 C -0.156 4.156 12 C -0.107 4.107 13 C -0.179 4.179 14 C 0.518 3.482 15 O -0.531 6.531 16 N -0.726 5.726 17 N -0.340 5.340 18 C 0.255 3.745 19 C -0.543 4.543 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.885 5.885 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.280 1.280 27 N -0.281 5.281 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.418 0.582 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.408 0.592 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 17.187 -3.134 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.324 4.324 4 C 0.071 3.929 5 N -0.289 5.289 6 C 0.304 3.696 7 O -0.371 6.371 8 C 0.021 3.979 9 H 0.150 0.850 10 C -0.153 4.153 11 C -0.193 4.193 12 C -0.145 4.145 13 C -0.220 4.220 14 C 0.305 3.695 15 O -0.406 6.406 16 N -0.383 5.383 17 N -0.125 5.125 18 C 0.138 3.862 19 C -0.582 4.582 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.522 5.522 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 N -0.106 5.106 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.246 0.754 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.622 15.751 -3.549 16.547 hybrid contribution 1.475 0.216 1.221 1.926 sum -2.147 15.967 -2.329 16.278 Atomic orbital electron populations 1.20024 0.87505 1.02495 1.02089 1.22041 0.96560 0.90993 1.01882 1.21249 0.88852 1.00482 1.21814 1.17937 0.87782 0.83527 1.03624 1.43222 1.08876 1.05801 1.70997 1.20478 0.91478 0.81657 0.75958 1.90609 1.25939 1.73437 1.47110 1.21571 0.83885 0.91709 1.00730 0.84964 1.21581 1.01339 0.95179 0.97216 1.21648 1.01271 1.00630 0.95730 1.21172 1.01551 0.93106 0.98689 1.22806 0.96044 1.00380 1.02769 1.20697 0.91072 0.77311 0.80466 1.90798 1.41911 1.42446 1.65483 1.46059 1.14392 1.53345 1.24536 1.49406 1.06604 1.02147 1.54319 1.19662 0.77707 0.89797 0.99083 1.21336 1.13458 1.32176 0.91198 0.91665 1.24956 0.95686 0.94916 0.98166 1.69932 1.19073 1.32357 1.30888 0.86304 0.78349 0.78512 0.83562 1.19575 1.20464 1.20627 1.77390 0.86082 1.21811 1.25342 0.91322 0.91477 0.91106 0.82021 0.74348 0.89419 0.90185 0.88042 0.91341 0.91897 0.90549 0.88202 0.86773 0.75422 0.92422 0.93893 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.01 0.38 -0.50 16 2 C 0.05 0.96 7.21 -82.44 -0.59 0.37 16 3 C -0.29 -5.55 9.58 -39.78 -0.38 -5.94 16 4 C 0.29 5.90 7.27 -153.15 -1.11 4.79 16 5 N -0.64 -10.69 3.44 -11.46 -0.04 -10.73 16 6 C 0.52 7.05 4.16 -10.98 -0.05 7.00 16 7 O -0.50 -7.40 11.21 5.55 0.06 -7.34 16 8 C 0.13 1.24 3.80 -68.71 -0.26 0.97 16 9 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.11 -0.92 5.34 -27.36 -0.15 -1.07 16 11 C -0.16 -1.49 5.16 -27.98 -0.14 -1.64 16 12 C -0.11 -1.14 5.66 -27.33 -0.15 -1.29 16 13 C -0.18 -2.45 5.34 -27.50 -0.15 -2.59 16 14 C 0.52 7.57 5.60 -11.25 -0.06 7.51 16 15 O -0.53 -10.04 17.92 5.56 0.10 -9.94 16 16 N -0.73 -7.95 4.59 -54.56 -0.25 -8.20 16 17 N -0.34 -7.84 3.60 -61.57 -0.22 -8.06 16 18 C 0.26 6.48 6.01 -5.20 -0.03 6.45 16 19 C -0.54 -14.73 9.39 -34.44 -0.32 -15.06 16 20 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 23 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 N -0.28 -6.38 12.56 33.65 0.42 -5.96 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.16 2.88 5.83 -52.49 -0.31 2.57 16 32 H 0.42 7.26 6.19 -40.82 -0.25 7.00 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.10 1.20 4.77 -51.93 -0.25 0.95 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.44 8.13 -51.93 -0.42 1.02 16 40 H 0.11 1.70 3.07 -51.93 -0.16 1.54 16 41 H 0.41 3.84 8.91 -40.82 -0.36 3.48 16 42 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16 43 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -32.87 349.46 -7.97 -40.84 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.89 Total: 11.67 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.13 Total: 0.72 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.65 Total: -57.07 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.16 Total: -17.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.87 -7.97 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575452040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.551 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds