Wall clock time and date at job start Tue Mar 31 2020 13:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39751 * 125.83749 * 2 1 4 4 C 1.36107 * 107.82671 * 179.97438 * 3 2 1 5 5 N 1.39480 * 126.21973 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99255 * 0.02858 * 5 4 3 7 7 O 1.21287 * 120.00617 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99697 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.60306 * 264.50688 * 8 6 5 10 10 C 1.52990 * 109.60704 * 144.01071 * 8 6 5 11 11 C 1.51779 * 110.87612 * 326.70971 * 10 8 6 12 12 C 1.51762 * 113.82417 * 293.01499 * 11 10 8 13 13 C 1.53058 * 110.76611 * 66.78411 * 12 11 10 14 14 C 1.51423 * 108.48903 * 275.10269 * 13 12 11 15 15 O 1.21281 * 119.89390 * 251.21397 * 14 13 12 16 16 N 1.33372 * 120.21593 * 71.24840 * 14 13 12 17 17 N 1.35267 * 107.56918 * 0.26345 * 4 3 2 18 18 C 1.46492 * 126.04728 * 179.73681 * 17 4 3 19 19 C 1.50700 * 109.47067 * 90.00244 * 18 17 4 20 20 H 1.07995 * 120.00135 * 359.97438 * 19 18 17 21 21 C 1.37888 * 120.00004 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99746 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46943 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47234 * 120.00095 * 23 21 19 26 26 H 1.48500 * 109.46663 * 239.99936 * 23 21 19 27 27 N 1.30849 * 125.83544 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46898 * 90.00000 * 1 2 3 29 29 H 1.09003 * 109.46821 * 209.99811 * 1 2 3 30 30 H 1.08998 * 109.46918 * 329.99534 * 1 2 3 31 31 H 1.07994 * 126.08734 * 359.94424 * 3 2 1 32 32 H 0.96996 * 120.00356 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.19334 * 87.06737 * 10 8 6 34 34 H 1.09000 * 109.19646 * 206.39790 * 10 8 6 35 35 H 1.08997 * 108.61655 * 54.11924 * 11 10 8 36 36 H 1.09006 * 108.61509 * 172.02645 * 11 10 8 37 37 H 1.09001 * 109.19366 * 306.45953 * 12 11 10 38 38 H 1.09001 * 109.23193 * 187.12933 * 12 11 10 39 39 H 1.08996 * 109.63620 * 155.40248 * 13 12 11 40 40 H 1.08996 * 109.63020 * 34.80395 * 13 12 11 41 41 H 0.96999 * 119.78735 * 180.27369 * 16 14 13 42 42 H 1.09002 * 109.47123 * 210.00221 * 18 17 4 43 43 H 1.09006 * 109.47384 * 330.00154 * 18 17 4 44 44 H 0.97006 * 119.99707 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6196 0.7121 0.0006 5 7 4.7513 1.5274 0.0003 6 6 4.6157 2.8683 -0.0001 7 8 3.5097 3.3660 -0.0006 8 6 5.8384 3.7493 0.0002 9 1 6.0773 4.0431 1.0223 10 6 5.5736 4.9953 -0.8471 11 6 4.6535 4.6728 -2.0104 12 6 5.2715 3.7478 -3.0426 13 6 5.5039 2.3546 -2.4529 14 6 6.8349 2.3548 -1.7308 15 8 7.7765 1.7503 -2.1988 16 7 6.9750 3.0168 -0.5815 17 7 3.6092 -0.6405 -0.0050 18 6 4.7870 -1.5116 -0.0119 19 6 5.1948 -1.8163 1.4065 20 1 4.6331 -1.4021 2.2307 21 6 6.2851 -2.6239 1.6521 22 7 6.9687 -3.1287 0.6484 23 14 6.7901 -3.0021 3.4103 24 1 5.8645 -2.3185 4.3491 25 1 6.7325 -4.4684 3.6374 26 1 8.1752 -2.5193 3.6421 27 7 2.2731 -1.0608 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.9902 2.1596 -0.0008 32 1 5.6359 1.1294 0.0004 33 1 5.1094 5.7601 -0.2244 34 1 6.5199 5.3736 -1.2338 35 1 3.7502 4.2040 -1.6200 36 1 4.3758 5.6047 -2.5031 37 1 6.2248 4.1624 -3.3703 38 1 4.6024 3.6677 -3.8994 39 1 5.5221 1.6160 -3.2542 40 1 4.7058 2.1169 -1.7497 41 1 7.8315 3.0161 -0.1263 42 1 4.5484 -2.4411 -0.5290 43 1 5.6070 -1.0100 -0.5260 44 1 7.7356 -3.6972 0.8212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575452040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:41 Heat of formation + Delta-G solvation = 2.944576 kcal Electronic energy + Delta-G solvation = -28765.749436 eV Core-core repulsion = 24912.679670 eV Total energy + Delta-G solvation = -3853.069767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.16771 -41.82412 -40.13602 -37.39440 -36.51108 -35.77121 -35.03243 -33.88103 -32.12369 -30.87221 -30.06676 -28.01697 -27.81235 -25.62334 -24.82550 -23.74212 -21.88265 -21.31266 -21.17173 -20.21695 -18.96260 -18.86489 -18.60126 -18.23916 -17.06267 -16.87145 -16.62212 -16.21346 -16.00004 -15.77402 -15.36654 -15.17760 -14.85633 -14.59105 -14.49664 -14.40235 -14.06826 -13.78042 -13.68868 -13.56371 -13.41637 -13.09920 -12.93855 -12.76026 -12.70128 -12.35600 -12.13774 -11.89137 -11.80122 -11.63195 -11.59375 -11.35635 -11.02697 -10.89469 -10.81719 -10.30446 -9.65347 -9.08102 -8.40533 -6.59856 0.67952 1.20545 1.31983 1.33980 1.42160 1.48318 1.54263 1.97587 2.04899 2.16349 2.30453 2.89526 3.17657 3.30569 3.67457 3.79502 3.82132 3.92950 4.04570 4.21728 4.25245 4.42294 4.53388 4.62761 4.67592 4.76177 4.79864 4.83439 4.91765 4.92697 4.95966 5.01449 5.14827 5.18303 5.21866 5.23083 5.45626 5.52183 5.68828 5.70811 5.89487 5.95802 6.06642 6.18752 6.51313 6.77873 7.00187 7.02808 7.12929 8.66251 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.005670 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.087571 B = 4937.048122 C = 6492.697937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.296 4.296 4 C 0.293 3.707 5 N -0.647 5.647 6 C 0.516 3.484 7 O -0.504 6.504 8 C 0.135 3.865 9 H 0.175 0.825 10 C -0.111 4.111 11 C -0.154 4.154 12 C -0.103 4.103 13 C -0.180 4.180 14 C 0.517 3.483 15 O -0.584 6.584 16 N -0.710 5.710 17 N -0.368 5.368 18 C 0.276 3.724 19 C -0.555 4.555 20 H 0.052 0.948 21 C 0.022 3.978 22 N -0.916 5.916 23 Si 0.974 3.026 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.266 1.266 27 N -0.331 5.331 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.179 0.821 32 H 0.412 0.588 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.418 0.582 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 20.115 -1.696 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.327 4.327 4 C 0.071 3.929 5 N -0.296 5.296 6 C 0.305 3.695 7 O -0.378 6.378 8 C 0.028 3.972 9 H 0.192 0.808 10 C -0.149 4.149 11 C -0.191 4.191 12 C -0.140 4.140 13 C -0.221 4.221 14 C 0.305 3.695 15 O -0.463 6.463 16 N -0.366 5.366 17 N -0.153 5.153 18 C 0.156 3.844 19 C -0.593 4.593 20 H 0.070 0.930 21 C -0.179 4.179 22 N -0.554 5.554 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.191 1.191 27 N -0.156 5.156 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.196 0.804 32 H 0.250 0.750 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.258 0.742 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.039 18.749 -2.088 19.293 hybrid contribution 1.485 -0.607 0.719 1.758 sum -2.554 18.142 -1.368 18.372 Atomic orbital electron populations 1.20236 0.83777 1.03975 1.03904 1.22945 0.98777 0.90119 0.98865 1.21504 0.88298 1.01059 1.21884 1.18390 0.89491 0.82746 1.02267 1.43501 1.07595 1.06642 1.71833 1.21336 0.92914 0.80615 0.74655 1.90595 1.26868 1.73183 1.47106 1.21948 0.81185 0.90748 1.03340 0.80838 1.21666 1.02138 0.94459 0.96657 1.21626 1.00504 1.00935 0.96064 1.21194 1.02225 0.91323 0.99290 1.22776 0.95202 1.02091 1.02014 1.20841 0.90598 0.76905 0.81156 1.90772 1.43465 1.44900 1.67210 1.45964 1.15388 1.52136 1.23116 1.49123 1.06240 1.03055 1.56896 1.19102 0.78529 0.88825 0.97906 1.21424 1.13778 1.32703 0.91423 0.93022 1.25810 0.95372 0.94338 1.02401 1.70032 1.19518 1.32766 1.33067 0.85263 0.78398 0.78338 0.78224 1.19514 1.19962 1.19111 1.77339 0.86241 1.23899 1.28126 0.89208 0.91150 0.88422 0.80412 0.75033 0.86816 0.88381 0.90208 0.89110 0.91223 0.89891 0.90172 0.87863 0.74231 0.95747 0.94953 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.44 71.24 0.74 -0.84 16 2 C 0.06 2.22 7.21 43.07 0.31 2.53 16 3 C -0.30 -11.12 9.58 22.14 0.21 -10.91 16 4 C 0.29 12.03 7.27 131.31 0.95 12.98 16 5 N -0.65 -21.79 3.44 -308.55 -1.06 -22.85 16 6 C 0.52 13.25 4.16 87.66 0.36 13.61 16 7 O -0.50 -13.96 11.21 -3.05 -0.03 -13.99 16 8 C 0.14 2.16 3.80 44.11 0.17 2.33 16 9 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 10 C -0.11 -1.32 5.34 30.19 0.16 -1.16 16 11 C -0.15 -2.50 5.16 29.79 0.15 -2.35 16 12 C -0.10 -2.04 5.66 30.21 0.17 -1.87 16 13 C -0.18 -5.01 5.34 30.10 0.16 -4.84 16 14 C 0.52 15.25 5.60 88.11 0.49 15.74 16 15 O -0.58 -22.91 17.92 -3.03 -0.05 -22.97 16 16 N -0.71 -14.46 4.59 -445.72 -2.05 -16.50 16 17 N -0.37 -17.77 3.60 -348.72 -1.26 -19.03 16 18 C 0.28 14.88 6.01 85.63 0.51 15.39 16 19 C -0.56 -31.21 9.39 25.60 0.24 -30.97 16 20 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 21 C 0.02 1.23 5.46 84.66 0.46 1.69 16 22 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 23 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 27 N -0.33 -15.55 12.56 -47.45 -0.60 -16.14 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.18 6.04 5.83 -2.91 -0.02 6.02 16 32 H 0.41 14.77 6.19 -92.71 -0.57 14.19 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 0.93 8.05 -2.39 -0.02 0.91 16 35 H 0.08 1.70 4.77 -2.39 -0.01 1.69 16 36 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 1.31 7.86 -2.39 -0.02 1.29 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 2.49 8.13 -2.39 -0.02 2.47 16 40 H 0.10 3.12 3.07 -2.39 -0.01 3.11 16 41 H 0.42 7.13 8.91 -92.71 -0.83 6.30 16 42 H 0.02 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.03 1.78 7.50 -2.38 -0.02 1.76 16 44 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -75.46 349.46 2.03 -73.42 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.34 Total: 34.14 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.11 Total: 11.34 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -4.67 Total: -127.01 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.09 Total: -36.96 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -75.46 2.03 -73.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575452040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.366 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds