Wall clock time and date at job start Tue Mar 31 2020 12:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48503 * 109.46623 * 269.99448 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99287 * 3 2 1 6 6 H 1.48498 * 109.47270 * 149.99791 * 3 2 1 7 7 C 1.37878 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99900 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99680 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46666 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54106 * 68.37314 * 11 10 9 13 13 O 1.42110 * 110.54241 * 291.62566 * 11 10 9 14 14 N 1.65594 * 104.45089 * 180.02562 * 11 10 9 15 15 C 1.46499 * 120.00605 * 64.99890 * 14 11 10 16 16 H 1.09006 * 109.53292 * 24.89932 * 15 14 11 17 17 C 1.53121 * 109.50071 * 264.80735 * 15 14 11 18 18 C 1.53123 * 109.15709 * 182.39962 * 17 15 14 19 19 C 1.53036 * 109.27910 * 57.65405 * 18 17 15 20 20 N 1.46848 * 109.52325 * 300.81822 * 19 18 17 21 21 C 1.46901 * 111.00109 * 185.83663 * 20 19 18 22 22 C 1.53000 * 109.46769 * 45.79389 * 21 20 19 23 23 C 1.53001 * 109.46886 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47145 * 179.97438 * 23 22 21 25 25 C 1.46849 * 111.19595 * 61.74468 * 20 19 18 26 26 H 0.97004 * 120.00219 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47298 * 60.00488 * 9 7 2 28 28 H 1.08993 * 109.47174 * 299.99437 * 9 7 2 29 29 H 1.09006 * 109.47126 * 60.00414 * 10 9 7 30 30 H 1.08997 * 109.47364 * 300.00274 * 10 9 7 31 31 H 0.97001 * 119.99710 * 245.00130 * 14 11 10 32 32 H 1.09001 * 109.52047 * 302.30067 * 17 15 14 33 33 H 1.08999 * 109.52725 * 62.43288 * 17 15 14 34 34 H 1.09005 * 109.50464 * 177.59262 * 18 17 15 35 35 H 1.09000 * 109.50386 * 297.67051 * 18 17 15 36 36 H 1.08997 * 109.46297 * 180.80471 * 19 18 17 37 37 H 1.09006 * 109.46210 * 60.83495 * 19 18 17 38 38 H 1.09002 * 109.47401 * 285.79096 * 21 20 19 39 39 H 1.09001 * 109.46874 * 165.79109 * 21 20 19 40 40 H 1.09001 * 109.47194 * 299.99524 * 22 21 20 41 41 H 1.08992 * 109.47399 * 59.99697 * 22 21 20 42 42 H 1.09001 * 109.47109 * 299.99380 * 23 22 21 43 43 H 1.09002 * 109.47508 * 59.99571 * 23 22 21 44 44 H 0.96698 * 114.00171 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.46678 * 58.27111 * 25 20 19 46 46 H 1.09006 * 109.46228 * 178.25542 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 16 5.8356 -2.6364 0.0038 12 8 6.3332 -2.1454 1.2408 13 8 6.3352 -2.1466 -1.2332 14 7 6.2488 -4.2400 0.0042 15 6 5.9134 -5.0833 -1.1458 16 1 5.8179 -4.4631 -2.0371 17 6 4.5892 -5.8053 -0.8812 18 6 4.2764 -6.7296 -2.0612 19 6 5.4300 -7.7175 -2.2489 20 7 6.6736 -6.9779 -2.4997 21 6 7.7755 -7.8945 -2.8216 22 6 7.2950 -8.9325 -3.8377 23 6 8.4424 -9.8876 -4.1725 24 8 7.9935 -10.8575 -5.1210 25 6 7.0195 -6.1189 -1.3600 26 1 -0.4851 0.8401 -0.0004 27 1 3.8745 -0.6799 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 3.6586 -3.1509 -0.8876 30 1 3.6579 -3.1497 0.8924 31 1 6.7130 -4.6209 0.7660 32 1 4.6721 -6.3952 0.0316 33 1 3.7904 -5.0721 -0.7699 34 1 3.3564 -7.2785 -1.8597 35 1 4.1545 -6.1352 -2.9668 36 1 5.2169 -8.3678 -3.0973 37 1 5.5417 -8.3209 -1.3480 38 1 8.1047 -8.3999 -1.9137 39 1 8.6062 -7.3295 -3.2445 40 1 6.4642 -9.4975 -3.4148 41 1 6.9658 -8.4271 -4.7455 42 1 9.2735 -9.3230 -4.5953 43 1 8.7713 -10.3930 -3.2644 44 1 8.6709 -11.4971 -5.3801 45 1 7.1237 -6.7298 -0.4632 46 1 7.9608 -5.6080 -1.5628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576598344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:05 Heat of formation + Delta-G solvation = -132.197708 kcal Electronic energy + Delta-G solvation = -25617.713936 eV Core-core repulsion = 21861.935160 eV Total energy + Delta-G solvation = -3755.778776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.69511 -37.53573 -36.70904 -35.75784 -35.53432 -33.96613 -33.20744 -31.58632 -31.38373 -28.99274 -26.27804 -25.82373 -23.54331 -23.12938 -21.31429 -21.08442 -20.18947 -18.98061 -17.82978 -17.65575 -16.93620 -16.65579 -16.19954 -15.85035 -15.52579 -15.04608 -14.86832 -14.46818 -14.41856 -14.27645 -14.05512 -13.63942 -13.45949 -13.29914 -12.85327 -12.64278 -12.19323 -11.94131 -11.84386 -11.80254 -11.72434 -11.61222 -11.53674 -11.36079 -11.23173 -11.19435 -11.09837 -10.88272 -10.56681 -10.43651 -10.36746 -10.13278 -9.76874 -9.47149 -9.18753 -8.65680 -8.62240 -6.16026 -4.17149 0.66737 2.92374 3.27308 3.34596 3.38831 3.45115 3.93227 4.12981 4.36465 4.45688 4.52390 4.56756 4.67246 4.73127 4.77622 4.83386 4.97044 5.00833 5.06340 5.15248 5.16027 5.21704 5.26215 5.33680 5.46188 5.47805 5.55115 5.63492 5.67316 5.71473 5.77262 5.82302 5.93551 6.05928 6.23390 6.32455 6.72726 6.77722 6.82438 6.93297 7.04295 7.16566 7.55337 8.36937 8.85032 9.43740 10.96278 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.002697 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.380684 B =10378.602182 C =11052.149084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.583 4.583 11 S 2.590 3.410 12 O -0.968 6.968 13 O -0.964 6.964 14 N -1.121 6.121 15 C 0.151 3.849 16 H 0.104 0.896 17 C -0.150 4.150 18 C -0.117 4.117 19 C 0.045 3.955 20 N -0.534 5.534 21 C 0.060 3.940 22 C -0.126 4.126 23 C 0.077 3.923 24 O -0.575 6.575 25 C 0.057 3.943 26 H 0.266 0.734 27 H 0.032 0.968 28 H 0.028 0.972 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.411 0.589 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.380 0.620 45 H 0.040 0.960 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.309 -21.054 -5.006 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.096 0.904 9 C -0.046 4.046 10 C -0.717 4.717 11 S 2.688 3.312 12 O -0.958 6.958 13 O -0.954 6.954 14 N -0.877 5.877 15 C 0.043 3.957 16 H 0.122 0.878 17 C -0.189 4.189 18 C -0.155 4.155 19 C -0.082 4.082 20 N -0.259 5.259 21 C -0.068 4.068 22 C -0.164 4.164 23 C -0.001 4.001 24 O -0.380 6.380 25 C -0.072 4.072 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.244 0.756 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.227 0.773 45 H 0.058 0.942 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.086 -19.485 -5.499 25.858 hybrid contribution 0.606 -0.521 1.081 1.345 sum 16.692 -20.006 -4.418 26.427 Atomic orbital electron populations 1.69880 1.06196 1.27236 1.50037 1.24989 0.94826 0.99172 0.94171 0.86927 0.80685 0.83712 0.79134 1.19655 1.20794 1.18642 1.20837 0.87792 0.94875 1.52199 0.90406 1.19412 0.99918 0.87448 0.97861 1.30396 1.21168 1.09190 1.10901 1.05587 0.79113 0.72352 0.74184 1.93558 1.79264 1.77790 1.45209 1.93558 1.78329 1.77941 1.45594 1.55787 1.74644 1.29975 1.27257 1.20761 0.93676 0.92552 0.88663 0.87815 1.22318 0.97765 0.99851 0.98979 1.21569 0.97277 0.97544 0.99133 1.22318 0.89785 0.95763 1.00361 1.61871 1.03339 1.22012 1.38712 1.21982 0.94093 0.93279 0.97411 1.21675 0.98218 0.96038 1.00430 1.22119 0.96557 0.90119 0.91346 1.86478 1.42596 1.45477 1.63483 1.22264 0.98708 0.94591 0.91684 0.92398 0.94972 0.95335 0.85555 0.85472 0.75557 0.91340 0.90150 0.90763 0.90391 0.89726 0.94824 0.94691 0.90234 0.90722 0.89991 0.93445 0.93814 0.77317 0.94228 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.46 5.23 37.16 0.19 -10.26 16 11 S 2.59 43.19 5.44 -107.50 -0.58 42.61 16 12 O -0.97 -18.81 18.08 -57.54 -1.04 -19.85 16 13 O -0.96 -18.81 17.39 -57.54 -1.00 -19.81 16 14 N -1.12 -13.43 5.36 -4.82 -0.03 -13.46 16 15 C 0.15 1.70 2.85 -67.85 -0.19 1.50 16 16 H 0.10 1.32 7.48 -51.93 -0.39 0.93 16 17 C -0.15 -1.54 5.56 -26.61 -0.15 -1.68 16 18 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 19 C 0.05 0.38 4.85 -3.83 -0.02 0.36 16 20 N -0.53 -4.89 4.81 -234.66 -1.13 -6.02 16 21 C 0.06 0.44 5.27 -3.82 -0.02 0.42 16 22 C -0.13 -0.91 4.83 -26.73 -0.13 -1.04 16 23 C 0.08 0.47 7.05 37.16 0.26 0.73 16 24 O -0.57 -4.14 13.66 -35.23 -0.48 -4.62 16 25 C 0.06 0.54 4.95 -3.83 -0.02 0.52 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 28 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 29 H 0.13 2.05 6.75 -51.92 -0.35 1.70 16 30 H 0.13 2.06 8.14 -51.93 -0.42 1.64 16 31 H 0.41 4.01 8.80 -34.46 -0.30 3.71 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.90 5.86 -51.93 -0.30 0.59 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.67 5.81 -51.93 -0.30 0.36 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.56 6.21 -51.93 -0.32 0.24 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.38 0.98 9.12 45.56 0.42 1.39 16 45 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.80 8.12 -51.93 -0.42 0.37 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -35.87 371.52 -10.31 -46.18 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.98 Total: 2.44 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -0.78 Total: -23.70 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.38 Total: -45.69 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -2.52 Total: -44.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 43.19 SS G_CDS: -0.58 Total: 42.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.87 -10.31 -46.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576598344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.018 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds