Wall clock time and date at job start Tue Mar 31 2020 12:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48503 * 109.46623 * 269.99448 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99287 * 3 2 1 6 6 H 1.48498 * 109.47270 * 149.99791 * 3 2 1 7 7 C 1.37878 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99900 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99680 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46666 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54106 * 68.37314 * 11 10 9 13 13 O 1.42110 * 110.54241 * 291.62566 * 11 10 9 14 14 N 1.65594 * 104.45089 * 180.02562 * 11 10 9 15 15 C 1.46499 * 120.00605 * 64.99890 * 14 11 10 16 16 H 1.09006 * 109.53292 * 24.89932 * 15 14 11 17 17 C 1.53121 * 109.50071 * 264.80735 * 15 14 11 18 18 C 1.53123 * 109.15709 * 182.39962 * 17 15 14 19 19 C 1.53036 * 109.27910 * 57.65405 * 18 17 15 20 20 N 1.46848 * 109.52325 * 300.81822 * 19 18 17 21 21 C 1.46901 * 111.00109 * 185.83663 * 20 19 18 22 22 C 1.53000 * 109.46769 * 45.79389 * 21 20 19 23 23 C 1.53001 * 109.46886 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47145 * 179.97438 * 23 22 21 25 25 C 1.46849 * 111.19595 * 61.74468 * 20 19 18 26 26 H 0.97004 * 120.00219 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47298 * 60.00488 * 9 7 2 28 28 H 1.08993 * 109.47174 * 299.99437 * 9 7 2 29 29 H 1.09006 * 109.47126 * 60.00414 * 10 9 7 30 30 H 1.08997 * 109.47364 * 300.00274 * 10 9 7 31 31 H 0.97001 * 119.99710 * 245.00130 * 14 11 10 32 32 H 1.09001 * 109.52047 * 302.30067 * 17 15 14 33 33 H 1.08999 * 109.52725 * 62.43288 * 17 15 14 34 34 H 1.09005 * 109.50464 * 177.59262 * 18 17 15 35 35 H 1.09000 * 109.50386 * 297.67051 * 18 17 15 36 36 H 1.08997 * 109.46297 * 180.80471 * 19 18 17 37 37 H 1.09006 * 109.46210 * 60.83495 * 19 18 17 38 38 H 1.09002 * 109.47401 * 285.79096 * 21 20 19 39 39 H 1.09001 * 109.46874 * 165.79109 * 21 20 19 40 40 H 1.09001 * 109.47194 * 299.99524 * 22 21 20 41 41 H 1.08992 * 109.47399 * 59.99697 * 22 21 20 42 42 H 1.09001 * 109.47109 * 299.99380 * 23 22 21 43 43 H 1.09002 * 109.47508 * 59.99571 * 23 22 21 44 44 H 0.96698 * 114.00171 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.46678 * 58.27111 * 25 20 19 46 46 H 1.09006 * 109.46228 * 178.25542 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 16 5.8356 -2.6364 0.0038 12 8 6.3332 -2.1454 1.2408 13 8 6.3352 -2.1466 -1.2332 14 7 6.2488 -4.2400 0.0042 15 6 5.9134 -5.0833 -1.1458 16 1 5.8179 -4.4631 -2.0371 17 6 4.5892 -5.8053 -0.8812 18 6 4.2764 -6.7296 -2.0612 19 6 5.4300 -7.7175 -2.2489 20 7 6.6736 -6.9779 -2.4997 21 6 7.7755 -7.8945 -2.8216 22 6 7.2950 -8.9325 -3.8377 23 6 8.4424 -9.8876 -4.1725 24 8 7.9935 -10.8575 -5.1210 25 6 7.0195 -6.1189 -1.3600 26 1 -0.4851 0.8401 -0.0004 27 1 3.8745 -0.6799 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 3.6586 -3.1509 -0.8876 30 1 3.6579 -3.1497 0.8924 31 1 6.7130 -4.6209 0.7660 32 1 4.6721 -6.3952 0.0316 33 1 3.7904 -5.0721 -0.7699 34 1 3.3564 -7.2785 -1.8597 35 1 4.1545 -6.1352 -2.9668 36 1 5.2169 -8.3678 -3.0973 37 1 5.5417 -8.3209 -1.3480 38 1 8.1047 -8.3999 -1.9137 39 1 8.6062 -7.3295 -3.2445 40 1 6.4642 -9.4975 -3.4148 41 1 6.9658 -8.4271 -4.7455 42 1 9.2735 -9.3230 -4.5953 43 1 8.7713 -10.3930 -3.2644 44 1 8.6709 -11.4971 -5.3801 45 1 7.1237 -6.7298 -0.4632 46 1 7.9608 -5.6080 -1.5628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576598344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:04 Heat of formation + Delta-G solvation = -163.408528 kcal Electronic energy + Delta-G solvation = -25619.067339 eV Core-core repulsion = 21861.935160 eV Total energy + Delta-G solvation = -3757.132178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42529 -38.22177 -38.00535 -37.05153 -36.51709 -35.89182 -34.00422 -33.46548 -32.11831 -29.82840 -27.92865 -26.68403 -24.25206 -23.88932 -23.08572 -21.79086 -20.99642 -20.24139 -19.37879 -18.48018 -18.32939 -17.59578 -17.06810 -16.80729 -16.69975 -16.36925 -16.02996 -15.73552 -15.31505 -15.09758 -15.05566 -14.85144 -14.80748 -14.16550 -13.93747 -13.81860 -13.44098 -13.24369 -13.15881 -13.06405 -13.05505 -12.92967 -12.68573 -12.49824 -12.25291 -12.12326 -12.06943 -11.96377 -11.87357 -11.68826 -11.58954 -11.29976 -11.19987 -10.83534 -10.83260 -10.36798 -9.26480 -8.35383 -6.40622 -0.71049 1.32644 1.34402 1.44350 1.74638 2.30300 2.74624 2.82578 2.98621 3.26086 3.45255 3.68663 3.84564 3.89396 3.96162 4.04855 4.07321 4.18664 4.27982 4.28102 4.39809 4.45331 4.52812 4.56117 4.60344 4.66890 4.73109 4.75556 4.78754 4.97349 4.99372 5.07777 5.09199 5.17504 5.19398 5.24329 5.30675 5.45693 5.48652 6.04732 6.12686 6.17403 6.18268 6.65358 6.91215 7.23499 8.80001 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.002697 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.380684 B =10378.602182 C =11052.149084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.012 3.988 3 Si 0.924 3.076 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.524 4.524 8 H 0.050 0.950 9 C -0.017 4.017 10 C -0.589 4.589 11 S 2.623 3.377 12 O -0.992 6.992 13 O -0.991 6.991 14 N -1.101 6.101 15 C 0.146 3.854 16 H 0.087 0.913 17 C -0.150 4.150 18 C -0.117 4.117 19 C 0.048 3.952 20 N -0.549 5.549 21 C 0.063 3.937 22 C -0.122 4.122 23 C 0.077 3.923 24 O -0.599 6.599 25 C 0.061 3.939 26 H 0.269 0.731 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.426 0.574 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.398 0.602 45 H 0.056 0.944 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.353 -22.214 -4.734 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.563 4.563 8 H 0.069 0.931 9 C -0.056 4.056 10 C -0.720 4.720 11 S 2.719 3.281 12 O -0.983 6.983 13 O -0.981 6.981 14 N -0.861 5.861 15 C 0.039 3.961 16 H 0.105 0.895 17 C -0.190 4.190 18 C -0.156 4.156 19 C -0.079 4.079 20 N -0.275 5.275 21 C -0.064 4.064 22 C -0.160 4.160 23 C -0.001 4.001 24 O -0.408 6.408 25 C -0.069 4.069 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.263 0.737 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.248 0.752 45 H 0.074 0.926 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.143 -20.663 -5.223 27.990 hybrid contribution -0.042 -0.310 0.957 1.007 sum 18.101 -20.973 -4.265 28.031 Atomic orbital electron populations 1.70007 1.07842 1.28316 1.51784 1.25874 0.95647 1.03003 0.94117 0.86036 0.79928 0.79504 0.79833 1.18606 1.19991 1.17303 1.21159 0.90194 0.93836 1.51076 0.93127 1.19376 0.97257 0.91170 0.97834 1.30399 1.23091 1.06051 1.12465 1.04386 0.77766 0.73097 0.72887 1.93521 1.79332 1.79182 1.46229 1.93526 1.78391 1.79314 1.46828 1.55282 1.74159 1.28415 1.28263 1.20894 0.95146 0.92640 0.87457 0.89495 1.22320 0.96680 0.99859 1.00102 1.21579 0.98285 0.97554 0.98151 1.22293 0.89168 0.95452 1.00974 1.61844 1.04148 1.22808 1.38704 1.21984 0.93505 0.93040 0.97884 1.21616 0.98685 0.96113 0.99592 1.22142 0.96115 0.90003 0.91868 1.86424 1.44207 1.46269 1.63862 1.22196 0.97699 0.94372 0.92635 0.92181 0.94959 0.95121 0.84286 0.83942 0.73727 0.89844 0.91360 0.89759 0.91629 0.89318 0.93902 0.93460 0.89942 0.91122 0.91710 0.92538 0.92424 0.75210 0.92554 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16 2 C 0.01 0.70 5.47 84.65 0.46 1.16 16 3 Si 0.92 43.95 27.47 68.60 1.88 45.84 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 7 C -0.52 -29.39 9.66 25.60 0.25 -29.14 16 8 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 9 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 10 C -0.59 -20.65 5.23 71.98 0.38 -20.27 16 11 S 2.62 83.94 5.44 -56.49 -0.31 83.63 16 12 O -0.99 -37.01 18.08 -127.65 -2.31 -39.32 16 13 O -0.99 -37.61 17.39 -127.65 -2.22 -39.83 16 14 N -1.10 -24.15 5.36 -169.16 -0.91 -25.06 16 15 C 0.15 3.03 2.85 45.04 0.13 3.16 16 16 H 0.09 2.14 7.48 -2.38 -0.02 2.12 16 17 C -0.15 -2.84 5.56 30.68 0.17 -2.67 16 18 C -0.12 -2.02 6.09 30.65 0.19 -1.83 16 19 C 0.05 0.73 4.85 86.33 0.42 1.15 16 20 N -0.55 -9.03 4.81 -896.34 -4.31 -13.34 16 21 C 0.06 0.79 5.27 86.30 0.46 1.25 16 22 C -0.12 -1.58 4.83 30.59 0.15 -1.43 16 23 C 0.08 0.78 7.05 71.98 0.51 1.29 16 24 O -0.60 -7.74 13.66 -148.98 -2.03 -9.78 16 25 C 0.06 1.01 4.95 86.33 0.43 1.44 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.03 1.49 7.20 -2.39 -0.02 1.48 16 28 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 29 H 0.14 4.46 6.75 -2.39 -0.02 4.45 16 30 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 31 H 0.43 7.14 8.80 -96.75 -0.85 6.29 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.45 5.86 -2.39 -0.01 1.44 16 34 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.27 5.81 -2.39 -0.01 1.26 16 37 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.96 6.21 -2.39 -0.01 0.94 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.40 1.43 9.12 -74.06 -0.68 0.75 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 1.40 8.12 -2.38 -0.02 1.38 16 Total: -1.00 -76.74 371.52 -6.85 -83.59 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.60 Total: 18.31 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.65 Total: -46.60 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -4.92 Total: -95.84 kcal Atomic # 8 Polarization: -82.37 SS G_CDS: -6.56 Total: -88.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: 83.94 SS G_CDS: -0.31 Total: 83.63 kcal Total: -76.74 -6.85 -83.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576598344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.817 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds