Wall clock time and date at job start Tue Mar 31 2020 13:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39756 * 125.83778 * 2 1 4 4 C 1.36115 * 107.82757 * 180.13744 * 3 2 1 5 5 N 1.39476 * 126.21556 * 179.89829 * 4 3 2 6 6 C 1.34778 * 120.00100 * 359.69046 * 5 4 3 7 7 O 1.21287 * 119.99992 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99741 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.46617 * 179.97438 * 8 6 5 10 10 O 1.21283 * 120.00521 * 359.73030 * 9 8 6 11 11 N 1.34784 * 119.99774 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72962 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53007 * 117.49539 * 243.61881 * 13 12 11 15 15 C 1.52998 * 117.49619 * 174.99955 * 13 12 11 16 16 N 1.35257 * 107.56552 * 359.63863 * 4 3 2 17 17 C 1.46501 * 126.04821 * 180.22741 * 16 4 3 18 18 C 1.50701 * 109.47171 * 89.99559 * 17 16 4 19 19 H 1.08002 * 120.00092 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00227 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99995 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46938 * 89.99711 * 22 20 18 24 24 H 1.48502 * 109.47301 * 210.00029 * 22 20 18 25 25 H 1.48500 * 109.47028 * 330.00133 * 22 20 18 26 26 N 1.30846 * 125.83918 * 179.72609 * 2 1 3 27 27 H 1.08998 * 109.47629 * 270.24533 * 1 2 3 28 28 H 1.09000 * 109.46859 * 30.24619 * 1 2 3 29 29 H 1.08996 * 109.46886 * 150.24058 * 1 2 3 30 30 H 1.08002 * 126.09054 * 0.02562 * 3 2 1 31 31 H 0.97004 * 119.99581 * 179.68765 * 5 4 3 32 32 H 1.09001 * 109.46798 * 60.00692 * 8 6 5 33 33 H 1.08993 * 109.47546 * 300.00244 * 8 6 5 34 34 H 0.97005 * 119.99846 * 359.72750 * 11 9 8 35 35 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 36 36 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 37 37 H 1.08994 * 115.55639 * 29.32447 * 13 12 11 38 38 H 1.09001 * 117.49468 * 359.97438 * 14 13 12 39 39 H 1.08996 * 117.49804 * 145.01935 * 14 13 12 40 40 H 1.08999 * 117.50081 * 214.97438 * 15 13 12 41 41 H 1.08998 * 117.49963 * 359.97438 * 15 13 12 42 42 H 1.08990 * 109.47346 * 209.99749 * 17 16 4 43 43 H 1.08997 * 109.47189 * 330.00287 * 17 16 4 44 44 H 0.97004 * 119.99836 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7121 -0.0031 5 7 4.7513 1.5275 -0.0062 6 6 4.6157 2.8684 -0.0125 7 8 3.5096 3.3661 -0.0160 8 6 5.8384 3.7493 -0.0152 9 6 5.4153 5.1957 -0.0230 10 8 4.2370 5.4829 -0.0310 11 7 6.3465 6.1701 -0.0271 12 6 5.9353 7.5762 -0.0407 13 6 7.1767 8.4705 -0.0434 14 6 7.3925 9.3831 1.1656 15 6 6.9600 9.9793 -0.1754 16 7 3.6092 -0.6404 0.0031 17 6 4.7870 -1.5116 0.0073 18 6 5.1908 -1.8037 1.4295 19 1 4.6263 -1.3829 2.2484 20 6 6.2809 -2.6083 1.6853 21 7 6.6330 -2.8635 2.9264 22 14 7.2577 -3.3357 0.2689 23 1 8.3485 -2.4024 -0.1108 24 1 7.8414 -4.6358 0.6863 25 1 6.3596 -3.5470 -0.8947 26 7 2.2731 -1.0607 0.0051 27 1 -0.3634 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3633 -0.8921 -0.5101 30 1 1.9902 2.1597 0.0004 31 1 5.6359 1.1294 -0.0037 32 1 6.4345 3.5407 -0.9037 33 1 6.4326 3.5490 0.8762 34 1 7.2889 5.9405 -0.0211 35 1 5.3441 7.7732 -0.9349 36 1 5.3362 7.7881 0.8449 37 1 8.0612 8.0457 -0.5179 38 1 6.6499 9.3465 1.9627 39 1 8.4192 9.5586 1.4868 40 1 7.7021 10.5472 -0.7364 41 1 5.9331 10.3347 -0.2607 42 1 4.5499 -2.4455 -0.5022 43 1 5.6084 -1.0146 -0.5088 44 1 7.3997 -3.4299 3.1063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577688541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:29 Heat of formation + Delta-G solvation = 36.529443 kcal Electronic energy + Delta-G solvation = -26065.439966 eV Core-core repulsion = 22213.826548 eV Total energy + Delta-G solvation = -3851.613417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95972 -40.08565 -38.74439 -37.69071 -34.75179 -34.26588 -33.70155 -32.16555 -31.24741 -29.44751 -28.20915 -26.89292 -26.28250 -22.84868 -22.72449 -21.94528 -21.38123 -20.46574 -19.67434 -19.20946 -17.31271 -17.22520 -17.11962 -16.64806 -16.15903 -15.79933 -15.32308 -14.92684 -14.75198 -14.43430 -14.29284 -13.96786 -13.68137 -13.45150 -13.32321 -13.06277 -12.68990 -12.59257 -12.35872 -12.09353 -11.96703 -11.86934 -11.84457 -11.78223 -11.13295 -10.95813 -10.84191 -10.63215 -10.43388 -10.20714 -10.15525 -9.78207 -9.73837 -9.27485 -9.23980 -8.87536 -7.91994 -7.43611 -6.34352 -4.38593 2.27194 2.50003 2.55982 3.02084 3.04814 3.12386 3.16289 3.18004 3.36578 3.60685 3.75173 4.12985 4.20530 4.33592 4.45198 4.52804 4.70899 4.82485 4.92067 5.00366 5.07591 5.20095 5.28675 5.33864 5.41061 5.45508 5.64374 5.66838 5.73082 6.05549 6.06401 6.18453 6.20699 6.25889 6.33896 6.40828 6.69773 6.78397 7.19939 7.25458 7.48808 7.59225 7.81787 8.09555 8.21297 8.38098 8.60721 8.72910 9.20372 10.77914 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.002906 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.161801 B = 9632.401678 C =11494.576219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.293 4.293 4 C 0.307 3.693 5 N -0.644 5.644 6 C 0.517 3.483 7 O -0.469 6.469 8 C -0.161 4.161 9 C 0.514 3.486 10 O -0.491 6.491 11 N -0.734 5.734 12 C 0.152 3.848 13 C -0.170 4.170 14 C -0.177 4.177 15 C -0.172 4.172 16 N -0.345 5.345 17 C 0.230 3.770 18 C -0.544 4.544 19 H 0.081 0.919 20 C 0.080 3.920 21 N -0.884 5.884 22 Si 0.872 3.128 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.263 1.263 26 N -0.284 5.284 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.164 0.836 31 H 0.413 0.587 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.400 0.600 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 20.559 -7.760 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C -0.325 4.325 4 C 0.085 3.915 5 N -0.292 5.292 6 C 0.301 3.699 7 O -0.338 6.338 8 C -0.204 4.204 9 C 0.298 3.702 10 O -0.362 6.362 11 N -0.389 5.389 12 C 0.029 3.971 13 C -0.189 4.189 14 C -0.214 4.214 15 C -0.209 4.209 16 N -0.131 5.131 17 C 0.111 3.889 18 C -0.583 4.583 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.520 5.520 22 Si 0.698 3.302 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.109 5.109 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.181 0.819 31 H 0.249 0.751 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.234 0.766 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.491 19.728 -7.641 21.442 hybrid contribution 2.028 -0.091 -0.431 2.076 sum 5.520 19.637 -8.072 21.937 Atomic orbital electron populations 1.20032 0.87450 1.02353 1.02311 1.22052 0.96578 0.90991 1.01374 1.21321 0.89040 1.00589 1.21510 1.17877 0.88129 0.82988 1.02477 1.42761 1.08040 1.05493 1.72931 1.19837 0.91018 0.81191 0.77866 1.90792 1.25871 1.72758 1.44386 1.21519 0.98598 0.92937 1.07336 1.19922 0.86264 0.86662 0.77345 1.90883 1.16613 1.83077 1.45646 1.45922 1.09716 1.05827 1.77457 1.20843 0.94608 0.79154 1.02511 1.22462 0.99855 0.92545 1.04013 1.23108 1.02891 1.03643 0.91762 1.22962 1.03086 0.94373 1.00486 1.48873 1.06172 1.01987 1.56032 1.19913 0.79320 0.90057 0.99611 1.21210 1.14116 1.32566 0.90369 0.90064 1.24829 0.96669 0.95237 0.95775 1.69877 1.26837 1.36759 1.18550 0.86916 0.80722 0.79739 0.82847 1.19690 1.20389 1.18753 1.77352 0.85777 1.21732 1.26047 0.91162 0.91049 0.91542 0.81906 0.75065 0.85658 0.85367 0.76578 0.91059 0.91254 0.87134 0.88407 0.88580 0.88443 0.88367 0.92789 0.94767 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.44 36.00 0.38 -0.59 16 2 C 0.06 1.14 7.21 -82.45 -0.59 0.54 16 3 C -0.29 -6.18 9.58 -39.78 -0.38 -6.56 16 4 C 0.31 6.49 7.66 -153.16 -1.17 5.31 16 5 N -0.64 -10.86 5.42 -11.46 -0.06 -10.92 16 6 C 0.52 8.13 7.79 -10.99 -0.09 8.04 16 7 O -0.47 -9.29 11.31 -18.97 -0.21 -9.50 16 8 C -0.16 -1.58 6.19 -29.04 -0.18 -1.76 16 9 C 0.51 6.13 7.82 -10.98 -0.09 6.05 16 10 O -0.49 -8.49 14.18 -18.96 -0.27 -8.76 16 11 N -0.73 -5.89 5.56 -60.30 -0.33 -6.22 16 12 C 0.15 1.23 5.96 -4.04 -0.02 1.20 16 13 C -0.17 -0.96 5.85 -90.62 -0.53 -1.49 16 14 C -0.18 -0.96 10.18 -26.73 -0.27 -1.23 16 15 C -0.17 -0.89 10.25 -26.73 -0.27 -1.17 16 16 N -0.35 -8.00 3.60 -61.57 -0.22 -8.22 16 17 C 0.23 5.37 5.07 -5.19 -0.03 5.34 16 18 C -0.54 -14.78 9.94 -34.44 -0.34 -15.12 16 19 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 21 N -0.88 -25.49 13.96 55.43 0.77 -24.72 16 22 Si 0.87 19.24 27.47 -169.99 -4.67 14.57 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 26 N -0.28 -6.64 12.56 33.65 0.42 -6.22 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.16 3.44 5.83 -52.49 -0.31 3.14 16 31 H 0.41 6.00 7.97 -40.82 -0.33 5.68 16 32 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 1.90 8.40 -40.82 -0.34 1.56 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.64 7.88 -51.93 -0.41 0.24 16 37 H 0.11 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 1.29 7.20 -51.93 -0.37 0.91 16 43 H 0.03 0.70 6.93 -51.93 -0.36 0.35 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -37.19 374.12 -8.97 -46.16 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.35 Total: 7.60 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.69 Total: 0.60 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.58 Total: -56.31 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.48 Total: -18.26 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.19 -8.97 -46.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577688541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.689 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds