Wall clock time and date at job start Tue Mar 31 2020 13:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39756 * 125.83778 * 2 1 4 4 C 1.36115 * 107.82757 * 180.13744 * 3 2 1 5 5 N 1.39476 * 126.21556 * 179.89829 * 4 3 2 6 6 C 1.34778 * 120.00100 * 359.69046 * 5 4 3 7 7 O 1.21287 * 119.99992 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99741 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.46617 * 179.97438 * 8 6 5 10 10 O 1.21283 * 120.00521 * 359.73030 * 9 8 6 11 11 N 1.34784 * 119.99774 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72962 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53007 * 117.49539 * 243.61881 * 13 12 11 15 15 C 1.52998 * 117.49619 * 174.99955 * 13 12 11 16 16 N 1.35257 * 107.56552 * 359.63863 * 4 3 2 17 17 C 1.46501 * 126.04821 * 180.22741 * 16 4 3 18 18 C 1.50701 * 109.47171 * 89.99559 * 17 16 4 19 19 H 1.08002 * 120.00092 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00227 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99995 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46938 * 89.99711 * 22 20 18 24 24 H 1.48502 * 109.47301 * 210.00029 * 22 20 18 25 25 H 1.48500 * 109.47028 * 330.00133 * 22 20 18 26 26 N 1.30846 * 125.83918 * 179.72609 * 2 1 3 27 27 H 1.08998 * 109.47629 * 270.24533 * 1 2 3 28 28 H 1.09000 * 109.46859 * 30.24619 * 1 2 3 29 29 H 1.08996 * 109.46886 * 150.24058 * 1 2 3 30 30 H 1.08002 * 126.09054 * 0.02562 * 3 2 1 31 31 H 0.97004 * 119.99581 * 179.68765 * 5 4 3 32 32 H 1.09001 * 109.46798 * 60.00692 * 8 6 5 33 33 H 1.08993 * 109.47546 * 300.00244 * 8 6 5 34 34 H 0.97005 * 119.99846 * 359.72750 * 11 9 8 35 35 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 36 36 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 37 37 H 1.08994 * 115.55639 * 29.32447 * 13 12 11 38 38 H 1.09001 * 117.49468 * 359.97438 * 14 13 12 39 39 H 1.08996 * 117.49804 * 145.01935 * 14 13 12 40 40 H 1.08999 * 117.50081 * 214.97438 * 15 13 12 41 41 H 1.08998 * 117.49963 * 359.97438 * 15 13 12 42 42 H 1.08990 * 109.47346 * 209.99749 * 17 16 4 43 43 H 1.08997 * 109.47189 * 330.00287 * 17 16 4 44 44 H 0.97004 * 119.99836 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7121 -0.0031 5 7 4.7513 1.5275 -0.0062 6 6 4.6157 2.8684 -0.0125 7 8 3.5096 3.3661 -0.0160 8 6 5.8384 3.7493 -0.0152 9 6 5.4153 5.1957 -0.0230 10 8 4.2370 5.4829 -0.0310 11 7 6.3465 6.1701 -0.0271 12 6 5.9353 7.5762 -0.0407 13 6 7.1767 8.4705 -0.0434 14 6 7.3925 9.3831 1.1656 15 6 6.9600 9.9793 -0.1754 16 7 3.6092 -0.6404 0.0031 17 6 4.7870 -1.5116 0.0073 18 6 5.1908 -1.8037 1.4295 19 1 4.6263 -1.3829 2.2484 20 6 6.2809 -2.6083 1.6853 21 7 6.6330 -2.8635 2.9264 22 14 7.2577 -3.3357 0.2689 23 1 8.3485 -2.4024 -0.1108 24 1 7.8414 -4.6358 0.6863 25 1 6.3596 -3.5470 -0.8947 26 7 2.2731 -1.0607 0.0051 27 1 -0.3634 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3633 -0.8921 -0.5101 30 1 1.9902 2.1597 0.0004 31 1 5.6359 1.1294 -0.0037 32 1 6.4345 3.5407 -0.9037 33 1 6.4326 3.5490 0.8762 34 1 7.2889 5.9405 -0.0211 35 1 5.3441 7.7732 -0.9349 36 1 5.3362 7.7881 0.8449 37 1 8.0612 8.0457 -0.5179 38 1 6.6499 9.3465 1.9627 39 1 8.4192 9.5586 1.4868 40 1 7.7021 10.5472 -0.7364 41 1 5.9331 10.3347 -0.2607 42 1 4.5499 -2.4455 -0.5022 43 1 5.6084 -1.0146 -0.5088 44 1 7.3997 -3.4299 3.1063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577688541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:29 Heat of formation + Delta-G solvation = 10.020250 kcal Electronic energy + Delta-G solvation = -26066.589491 eV Core-core repulsion = 22213.826548 eV Total energy + Delta-G solvation = -3852.762942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.46646 -41.22902 -39.85880 -38.32630 -36.24839 -35.53542 -35.08224 -33.97305 -32.28792 -31.04284 -29.66815 -28.01978 -27.68473 -24.45995 -23.39232 -23.21122 -21.98687 -21.55288 -21.14223 -20.54618 -19.24337 -18.51571 -18.30678 -17.61887 -17.18253 -16.89542 -16.61311 -16.25064 -16.07403 -15.62776 -15.39166 -15.02704 -14.90845 -14.76609 -14.39052 -14.29125 -14.21155 -14.13998 -13.79252 -13.49945 -13.16707 -13.02141 -12.86039 -12.51290 -12.38484 -12.34370 -12.10169 -11.84495 -11.73654 -11.52994 -11.42656 -11.14148 -11.05662 -10.89262 -10.53208 -10.02414 -9.60910 -9.06199 -8.40416 -6.53405 0.80236 1.23735 1.34896 1.41239 1.50332 1.61702 1.68669 1.98822 2.06085 2.27180 2.42458 2.89884 2.91040 3.34923 3.72584 3.78140 3.84012 4.00750 4.12471 4.21317 4.28434 4.33841 4.38599 4.47287 4.60235 4.67788 4.70756 4.75009 4.82585 4.85985 4.91077 4.94109 5.05182 5.14646 5.19846 5.21469 5.22965 5.27301 5.50218 5.87722 5.99006 6.23250 6.37522 6.51307 6.58127 6.95281 7.07389 7.12105 7.33638 8.76096 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.002906 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.161801 B = 9632.401678 C =11494.576219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.313 4.313 4 C 0.307 3.693 5 N -0.638 5.638 6 C 0.511 3.489 7 O -0.512 6.512 8 C -0.146 4.146 9 C 0.510 3.490 10 O -0.555 6.555 11 N -0.712 5.712 12 C 0.151 3.849 13 C -0.166 4.166 14 C -0.179 4.179 15 C -0.172 4.172 16 N -0.366 5.366 17 C 0.238 3.762 18 C -0.553 4.553 19 H 0.020 0.980 20 C 0.024 3.976 21 N -0.935 5.935 22 Si 0.951 3.049 23 H -0.239 1.239 24 H -0.282 1.282 25 H -0.249 1.249 26 N -0.328 5.328 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.425 0.575 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.420 0.580 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.645 21.237 -9.855 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.345 4.345 4 C 0.084 3.916 5 N -0.288 5.288 6 C 0.298 3.702 7 O -0.384 6.384 8 C -0.188 4.188 9 C 0.295 3.705 10 O -0.431 6.431 11 N -0.367 5.367 12 C 0.027 3.973 13 C -0.185 4.185 14 C -0.216 4.216 15 C -0.210 4.210 16 N -0.151 5.151 17 C 0.118 3.882 18 C -0.591 4.591 19 H 0.038 0.962 20 C -0.176 4.176 21 N -0.573 5.573 22 Si 0.772 3.228 23 H -0.162 1.162 24 H -0.208 1.208 25 H -0.173 1.173 26 N -0.153 5.153 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.178 0.822 31 H 0.264 0.736 32 H 0.192 0.808 33 H 0.181 0.819 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.329 20.445 -9.740 23.515 hybrid contribution 1.089 -0.185 0.333 1.154 sum 7.418 20.260 -9.406 23.537 Atomic orbital electron populations 1.20220 0.84095 1.04111 1.03564 1.22850 0.98716 0.90104 0.98894 1.21469 0.89628 1.00614 1.22784 1.18247 0.89707 0.82743 1.00883 1.42956 1.07396 1.05699 1.72735 1.20976 0.92429 0.80819 0.75966 1.90782 1.28271 1.73269 1.46062 1.21604 0.96077 0.89839 1.11249 1.20336 0.85798 0.87988 0.76397 1.90873 1.19309 1.84039 1.48891 1.45741 1.10282 1.05225 1.75454 1.20815 0.95728 0.79599 1.01111 1.22407 0.99187 0.92327 1.04555 1.23157 1.03367 1.03503 0.91582 1.23049 1.03285 0.94145 1.00496 1.48828 1.06100 1.02661 1.57509 1.19781 0.80537 0.90707 0.97141 1.21211 1.13997 1.33025 0.90913 0.96154 1.25846 0.97611 0.95088 0.99039 1.70043 1.27863 1.37824 1.21595 0.85678 0.79537 0.78904 0.78693 1.16246 1.20786 1.17257 1.77284 0.86374 1.23302 1.28367 0.90017 0.88796 0.90257 0.82194 0.73644 0.80805 0.81852 0.74176 0.92327 0.93041 0.85163 0.89301 0.87332 0.87074 0.88910 0.93142 0.91015 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.85 10.44 71.24 0.74 -1.11 16 2 C 0.06 2.49 7.21 43.07 0.31 2.80 16 3 C -0.31 -13.49 9.58 22.14 0.21 -13.28 16 4 C 0.31 13.03 7.66 131.32 1.01 14.04 16 5 N -0.64 -20.83 5.42 -308.56 -1.67 -22.50 16 6 C 0.51 15.55 7.79 87.66 0.68 16.23 16 7 O -0.51 -20.64 11.31 20.39 0.23 -20.41 16 8 C -0.15 -2.40 6.19 29.10 0.18 -2.22 16 9 C 0.51 11.41 7.82 87.65 0.69 12.10 16 10 O -0.55 -19.56 14.18 20.40 0.29 -19.27 16 11 N -0.71 -9.87 5.56 -463.06 -2.57 -12.44 16 12 C 0.15 2.32 5.96 86.38 0.51 2.83 16 13 C -0.17 -1.54 5.85 -10.79 -0.06 -1.60 16 14 C -0.18 -1.65 10.18 30.60 0.31 -1.34 16 15 C -0.17 -1.52 10.25 30.59 0.31 -1.21 16 16 N -0.37 -17.09 3.60 -348.72 -1.26 -18.34 16 17 C 0.24 10.94 5.07 85.63 0.43 11.37 16 18 C -0.55 -30.69 9.94 25.60 0.25 -30.44 16 19 H 0.02 1.33 8.06 -2.91 -0.02 1.31 16 20 C 0.02 1.31 5.47 84.65 0.46 1.77 16 21 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 22 Si 0.95 38.29 27.47 68.60 1.88 40.17 16 23 H -0.24 -8.40 7.11 99.48 0.71 -7.69 16 24 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.25 -9.41 6.54 99.48 0.65 -8.76 16 26 N -0.33 -15.66 12.56 -47.45 -0.60 -16.25 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.16 6.99 5.83 -2.91 -0.02 6.97 16 31 H 0.43 11.39 7.97 -92.71 -0.74 10.65 16 32 H 0.17 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.42 2.41 8.40 -92.70 -0.78 1.63 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.98 7.88 -2.39 -0.02 0.97 16 37 H 0.13 0.72 8.04 -2.39 -0.02 0.70 16 38 H 0.09 0.98 8.03 -2.39 -0.02 0.96 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 42 H 0.05 2.35 7.20 -2.39 -0.02 2.33 16 43 H 0.07 2.74 6.93 -2.39 -0.02 2.72 16 44 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -87.94 374.12 2.13 -85.81 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.53 Total: 27.97 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.05 Total: 9.96 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -5.80 Total: -124.23 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: 0.52 Total: -39.68 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.88 Total: 40.17 kcal Total: -87.94 2.13 -85.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577688541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.831 kcal (2) G-P(sol) polarization free energy of solvation -87.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds