Wall clock time and date at job start Tue Mar 31 2020 12:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99542 * 2 1 4 4 H 1.48500 * 109.47143 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47460 * 29.99864 * 3 2 1 6 6 H 1.48507 * 109.46653 * 149.99864 * 3 2 1 7 7 C 1.39942 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99672 * 197.84826 * 7 2 1 9 9 C 1.41396 * 119.99988 * 17.85167 * 7 2 1 10 10 C 1.40718 * 120.23978 * 204.38276 * 9 7 2 11 11 C 1.37613 * 119.74180 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25160 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75119 * 179.97438 * 12 11 10 14 14 S 1.81395 * 109.47380 * 90.00045 * 13 12 11 15 15 C 1.81398 * 103.00041 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47174 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47356 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47356 * 179.97438 * 17 16 15 19 19 C 1.53176 * 109.54400 * 294.55582 * 18 17 16 20 20 C 1.53093 * 109.16579 * 183.15244 * 19 18 17 21 21 O 1.42904 * 109.41483 * 57.60492 * 20 19 18 22 22 C 1.42897 * 114.09829 * 298.84955 * 21 20 19 23 23 C 1.53086 * 109.41998 * 61.15416 * 22 21 20 24 24 C 1.38635 * 120.49639 * 0.25268 * 12 11 10 25 25 C 1.37620 * 120.25258 * 359.44809 * 24 12 11 26 26 H 0.97002 * 120.00548 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.12990 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.87733 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47127 * 329.99751 * 13 12 11 30 30 H 1.09003 * 109.46865 * 210.00164 * 13 12 11 31 31 H 1.08996 * 109.47414 * 59.99643 * 15 14 13 32 32 H 1.08995 * 109.47054 * 299.99526 * 15 14 13 33 33 H 1.09009 * 109.47149 * 59.99820 * 16 15 14 34 34 H 1.08997 * 109.47248 * 300.00107 * 16 15 14 35 35 H 1.08996 * 109.47256 * 59.99741 * 17 16 15 36 36 H 1.09006 * 109.46950 * 300.00210 * 17 16 15 37 37 H 1.08995 * 109.61569 * 54.77970 * 18 17 16 38 38 H 1.08999 * 109.52417 * 303.05970 * 19 18 17 39 39 H 1.08996 * 109.52077 * 63.24406 * 19 18 17 40 40 H 1.08998 * 109.47676 * 297.62939 * 20 19 18 41 41 H 1.08993 * 109.47985 * 177.59023 * 20 19 18 42 42 H 1.09008 * 109.48168 * 301.16514 * 22 21 20 43 43 H 1.09000 * 109.48836 * 181.14719 * 22 21 20 44 44 H 1.09002 * 109.52029 * 182.48402 * 23 22 21 45 45 H 1.08992 * 109.52416 * 62.29980 * 23 22 21 46 46 H 1.08004 * 119.87124 * 179.70480 * 24 12 11 47 47 H 1.07990 * 120.12826 * 180.27252 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4395 2.6528 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3520 -2.4071 -0.3743 10 6 1.8259 -3.6498 0.0855 11 6 1.1799 -4.8067 -0.2861 12 6 0.0668 -4.7512 -1.1106 13 6 -0.6315 -6.0251 -1.5110 14 16 -1.9231 -6.4137 -0.2981 15 6 -2.6369 -7.9524 -0.9408 16 6 -3.7603 -8.4200 -0.0132 17 6 -4.3628 -9.7176 -0.5557 18 6 -5.4857 -10.1855 0.3723 19 6 -4.8996 -10.5624 1.7363 20 6 -6.0175 -11.1033 2.6316 21 8 -6.6344 -12.2247 1.9960 22 6 -7.2410 -11.9216 0.7382 23 6 -6.1723 -11.4137 -0.2331 24 6 -0.4053 -3.5329 -1.5742 25 6 0.2212 -2.3627 -1.2104 26 1 -0.4851 0.8400 -0.0004 27 1 2.6936 -3.6955 0.7269 28 1 1.5420 -5.7616 0.0652 29 1 0.0913 -6.8402 -1.5458 30 1 -1.0833 -5.8980 -2.4948 31 1 -1.8637 -8.7191 -0.9896 32 1 -3.0386 -7.7775 -1.9388 33 1 -4.5337 -7.6534 0.0359 34 1 -3.3583 -8.5950 0.9847 35 1 -3.5896 -10.4843 -0.6052 36 1 -4.7648 -9.5421 -1.5535 37 1 -6.2146 -9.3848 0.4972 38 1 -4.1352 -11.3283 1.6053 39 1 -4.4571 -9.6802 2.1990 40 1 -6.7614 -10.3236 2.7952 41 1 -5.5987 -11.4130 3.5890 42 1 -8.0011 -11.1527 0.8770 43 1 -7.7039 -12.8208 0.3316 44 1 -6.6401 -11.1403 -1.1789 45 1 -5.4337 -12.1967 -0.4039 46 1 -1.2704 -3.5017 -2.2199 47 1 -0.1509 -1.4145 -1.5692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579794362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:06 Heat of formation + Delta-G solvation = -70.439913 kcal Electronic energy + Delta-G solvation = -22917.230376 eV Core-core repulsion = 19574.978883 eV Total energy + Delta-G solvation = -3342.251494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.79300 -37.64269 -36.29702 -34.02452 -32.81797 -31.41409 -31.24373 -29.33846 -27.92706 -27.45419 -24.32046 -23.91590 -23.44394 -21.34844 -21.03798 -20.33160 -19.99007 -17.35349 -16.56007 -16.35064 -15.87272 -15.65520 -15.35374 -15.03303 -14.71275 -14.40367 -14.28671 -13.90178 -13.89229 -13.52695 -13.33180 -12.85679 -12.61003 -12.42222 -12.06304 -11.99458 -11.96588 -11.86706 -11.64959 -11.46884 -11.18366 -11.12083 -11.06087 -10.96613 -10.61333 -10.56787 -10.51237 -10.36494 -9.80828 -9.71200 -9.49299 -9.42581 -9.15809 -7.51824 -7.33271 -7.19738 -6.82815 -4.40496 1.90250 2.76683 3.03070 3.03617 3.06217 3.07406 3.40071 3.55513 3.88051 4.29972 4.36201 4.49427 4.59015 4.67201 4.83559 4.87693 4.96565 5.08322 5.09906 5.24982 5.30899 5.35715 5.42290 5.52657 5.57939 5.59825 5.61660 5.62428 5.70419 5.74492 5.78915 5.81900 5.95322 6.10757 6.14260 6.16576 6.31103 6.35085 6.86279 6.90670 7.00865 7.21862 7.30154 7.55641 7.78698 7.99319 8.04816 8.23037 8.57563 8.82231 8.90675 10.10864 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.001760 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.448738 B =15909.137393 C =16160.014008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.227 4.227 11 C -0.067 4.067 12 C -0.211 4.211 13 C 0.000 4.000 14 S -0.281 6.281 15 C -0.095 4.095 16 C -0.102 4.102 17 C -0.108 4.108 18 C -0.089 4.089 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.386 6.386 22 C 0.060 3.940 23 C -0.151 4.151 24 C -0.079 4.079 25 C -0.168 4.168 26 H 0.282 0.718 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 -17.590 -0.860 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.112 3.888 10 C -0.247 4.247 11 C -0.088 4.088 12 C -0.215 4.215 13 C -0.147 4.147 14 S -0.050 6.050 15 C -0.244 4.244 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.108 4.108 19 C -0.191 4.191 20 C -0.017 4.017 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.189 4.189 24 C -0.099 4.099 25 C -0.187 4.187 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.976 -17.112 0.142 20.887 hybrid contribution 0.676 0.435 -1.206 1.450 sum -11.300 -16.676 -1.064 20.172 Atomic orbital electron populations 1.69833 1.07645 1.29444 1.34109 1.25963 0.94752 1.01482 0.92223 0.86282 0.80506 0.80406 0.79384 1.19195 1.20239 1.18533 1.19670 0.98214 0.91251 1.39424 0.90227 1.17676 0.90933 0.92075 0.88085 1.20951 1.04000 0.92736 1.07054 1.20362 0.95135 0.96619 0.96634 1.18401 1.01042 0.91592 1.10423 1.21964 0.96102 0.99432 0.97176 1.87460 1.45801 1.29810 1.41945 1.23332 1.00602 0.98561 1.01869 1.21349 0.96833 0.96835 0.98988 1.21628 0.97382 0.97006 0.98707 1.21209 0.97482 0.97140 0.94974 1.22312 0.98842 1.02006 0.95967 1.22609 0.94371 0.88906 0.95851 1.87924 1.73833 1.34487 1.34217 1.22573 0.94242 1.00827 0.84042 1.22254 0.99214 0.98335 0.99116 1.20517 0.97850 0.92464 0.99064 1.21287 0.99546 0.96657 1.01243 0.90683 0.88822 0.89332 0.91406 0.91357 0.90955 0.90945 0.91197 0.90958 0.91789 0.91765 0.90930 0.90981 0.90287 0.93202 0.88880 0.93266 0.89039 0.90874 0.91008 0.89364 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.16 10.95 55.55 0.61 -19.55 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.36 29.60 -169.99 -5.03 13.33 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.12 3.07 5.57 -106.83 -0.60 2.47 16 10 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 11 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 12 C -0.21 -4.62 5.16 -104.33 -0.54 -5.16 16 13 C 0.00 0.00 6.06 36.00 0.22 0.22 16 14 S -0.28 -4.88 21.72 -107.50 -2.33 -7.22 16 15 C -0.10 -1.19 5.94 37.16 0.22 -0.97 16 16 C -0.10 -1.07 4.99 -26.73 -0.13 -1.20 16 17 C -0.11 -0.90 4.69 -26.73 -0.13 -1.02 16 18 C -0.09 -0.69 2.27 -90.44 -0.21 -0.90 16 19 C -0.15 -1.22 5.10 -26.59 -0.14 -1.36 16 20 C 0.06 0.47 6.84 37.21 0.25 0.72 16 21 O -0.39 -3.68 10.77 -35.23 -0.38 -4.06 16 22 C 0.06 0.43 6.84 37.20 0.25 0.69 16 23 C -0.15 -1.05 5.42 -26.60 -0.14 -1.20 16 24 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 25 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 26 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 27 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.07 1.14 8.08 -51.92 -0.42 0.72 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.07 0.79 6.66 -51.93 -0.35 0.44 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.63 6.75 -51.93 -0.35 0.28 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 47 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -27.76 387.22 -12.32 -40.09 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.17 Total: 4.61 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: -2.85 Total: -33.04 kcal Atomic # 7 Polarization: -20.16 SS G_CDS: 0.61 Total: -19.55 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.38 Total: -4.06 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.33 Total: -7.22 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.76 -12.32 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579794362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.354 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds