Wall clock time and date at job start Tue Mar 31 2020 12:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99542 * 2 1 4 4 H 1.48500 * 109.47143 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47460 * 29.99864 * 3 2 1 6 6 H 1.48507 * 109.46653 * 149.99864 * 3 2 1 7 7 C 1.39942 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99672 * 197.84826 * 7 2 1 9 9 C 1.41396 * 119.99988 * 17.85167 * 7 2 1 10 10 C 1.40718 * 120.23978 * 204.38276 * 9 7 2 11 11 C 1.37613 * 119.74180 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25160 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75119 * 179.97438 * 12 11 10 14 14 S 1.81395 * 109.47380 * 90.00045 * 13 12 11 15 15 C 1.81398 * 103.00041 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47174 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47356 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47356 * 179.97438 * 17 16 15 19 19 C 1.53176 * 109.54400 * 294.55582 * 18 17 16 20 20 C 1.53093 * 109.16579 * 183.15244 * 19 18 17 21 21 O 1.42904 * 109.41483 * 57.60492 * 20 19 18 22 22 C 1.42897 * 114.09829 * 298.84955 * 21 20 19 23 23 C 1.53086 * 109.41998 * 61.15416 * 22 21 20 24 24 C 1.38635 * 120.49639 * 0.25268 * 12 11 10 25 25 C 1.37620 * 120.25258 * 359.44809 * 24 12 11 26 26 H 0.97002 * 120.00548 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.12990 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.87733 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47127 * 329.99751 * 13 12 11 30 30 H 1.09003 * 109.46865 * 210.00164 * 13 12 11 31 31 H 1.08996 * 109.47414 * 59.99643 * 15 14 13 32 32 H 1.08995 * 109.47054 * 299.99526 * 15 14 13 33 33 H 1.09009 * 109.47149 * 59.99820 * 16 15 14 34 34 H 1.08997 * 109.47248 * 300.00107 * 16 15 14 35 35 H 1.08996 * 109.47256 * 59.99741 * 17 16 15 36 36 H 1.09006 * 109.46950 * 300.00210 * 17 16 15 37 37 H 1.08995 * 109.61569 * 54.77970 * 18 17 16 38 38 H 1.08999 * 109.52417 * 303.05970 * 19 18 17 39 39 H 1.08996 * 109.52077 * 63.24406 * 19 18 17 40 40 H 1.08998 * 109.47676 * 297.62939 * 20 19 18 41 41 H 1.08993 * 109.47985 * 177.59023 * 20 19 18 42 42 H 1.09008 * 109.48168 * 301.16514 * 22 21 20 43 43 H 1.09000 * 109.48836 * 181.14719 * 22 21 20 44 44 H 1.09002 * 109.52029 * 182.48402 * 23 22 21 45 45 H 1.08992 * 109.52416 * 62.29980 * 23 22 21 46 46 H 1.08004 * 119.87124 * 179.70480 * 24 12 11 47 47 H 1.07990 * 120.12826 * 180.27252 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4395 2.6528 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3520 -2.4071 -0.3743 10 6 1.8259 -3.6498 0.0855 11 6 1.1799 -4.8067 -0.2861 12 6 0.0668 -4.7512 -1.1106 13 6 -0.6315 -6.0251 -1.5110 14 16 -1.9231 -6.4137 -0.2981 15 6 -2.6369 -7.9524 -0.9408 16 6 -3.7603 -8.4200 -0.0132 17 6 -4.3628 -9.7176 -0.5557 18 6 -5.4857 -10.1855 0.3723 19 6 -4.8996 -10.5624 1.7363 20 6 -6.0175 -11.1033 2.6316 21 8 -6.6344 -12.2247 1.9960 22 6 -7.2410 -11.9216 0.7382 23 6 -6.1723 -11.4137 -0.2331 24 6 -0.4053 -3.5329 -1.5742 25 6 0.2212 -2.3627 -1.2104 26 1 -0.4851 0.8400 -0.0004 27 1 2.6936 -3.6955 0.7269 28 1 1.5420 -5.7616 0.0652 29 1 0.0913 -6.8402 -1.5458 30 1 -1.0833 -5.8980 -2.4948 31 1 -1.8637 -8.7191 -0.9896 32 1 -3.0386 -7.7775 -1.9388 33 1 -4.5337 -7.6534 0.0359 34 1 -3.3583 -8.5950 0.9847 35 1 -3.5896 -10.4843 -0.6052 36 1 -4.7648 -9.5421 -1.5535 37 1 -6.2146 -9.3848 0.4972 38 1 -4.1352 -11.3283 1.6053 39 1 -4.4571 -9.6802 2.1990 40 1 -6.7614 -10.3236 2.7952 41 1 -5.5987 -11.4130 3.5890 42 1 -8.0011 -11.1527 0.8770 43 1 -7.7039 -12.8208 0.3316 44 1 -6.6401 -11.1403 -1.1789 45 1 -5.4337 -12.1967 -0.4039 46 1 -1.2704 -3.5017 -2.2199 47 1 -0.1509 -1.4145 -1.5692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579794362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:05 Heat of formation + Delta-G solvation = -81.299905 kcal Electronic energy + Delta-G solvation = -22917.701301 eV Core-core repulsion = 19574.978883 eV Total energy + Delta-G solvation = -3342.722418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40354 -39.49002 -37.01429 -35.85885 -33.59289 -33.01992 -31.98964 -31.21539 -29.37125 -28.52255 -25.83914 -24.72817 -24.22418 -22.92966 -22.23997 -21.67334 -20.93383 -19.25189 -17.42507 -17.17209 -16.97672 -16.86758 -16.52955 -16.02944 -15.74961 -15.66138 -15.59218 -15.46877 -15.02385 -14.63154 -14.33173 -14.09851 -13.87651 -13.81456 -13.44121 -13.37291 -13.03208 -12.87435 -12.77200 -12.72078 -12.61664 -12.26871 -12.17860 -12.14366 -11.85114 -11.66726 -11.49776 -11.30644 -11.21385 -11.15445 -10.99517 -10.76694 -10.40240 -9.39899 -9.20022 -8.66806 -8.57402 -6.35586 0.45926 1.11220 1.20593 1.37909 1.51448 1.56458 1.90560 2.19570 2.74387 2.98900 3.63685 3.73140 3.74747 3.87935 4.01587 4.09997 4.13443 4.14094 4.20299 4.30515 4.41953 4.49732 4.50581 4.55553 4.57836 4.65684 4.66447 4.69794 4.78450 4.83429 4.91248 4.98119 5.01995 5.03025 5.11823 5.12974 5.19660 5.24176 5.32780 5.37266 5.42015 5.49665 5.67134 5.91461 6.07122 6.17018 6.28143 6.34550 6.66417 6.90422 6.99489 8.29854 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.001760 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.448738 B =15909.137393 C =16160.014008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.082 3.918 10 C -0.244 4.244 11 C -0.072 4.072 12 C -0.201 4.201 13 C 0.006 3.994 14 S -0.331 6.331 15 C -0.075 4.075 16 C -0.097 4.097 17 C -0.099 4.099 18 C -0.088 4.088 19 C -0.152 4.152 20 C 0.056 3.944 21 O -0.407 6.407 22 C 0.054 3.946 23 C -0.147 4.147 24 C -0.086 4.086 25 C -0.191 4.191 26 H 0.289 0.711 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 -19.250 -1.610 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.525 4.525 8 H 0.096 0.904 9 C 0.079 3.921 10 C -0.264 4.264 11 C -0.092 4.092 12 C -0.204 4.204 13 C -0.141 4.141 14 S -0.101 6.101 15 C -0.223 4.223 16 C -0.136 4.136 17 C -0.138 4.138 18 C -0.107 4.107 19 C -0.189 4.189 20 C -0.020 4.020 21 O -0.326 6.326 22 C -0.022 4.022 23 C -0.185 4.185 24 C -0.106 4.106 25 C -0.211 4.211 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.123 0.877 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.686 -18.771 -0.611 22.664 hybrid contribution 0.758 0.692 -0.985 1.423 sum -11.928 -18.079 -1.596 21.718 Atomic orbital electron populations 1.69887 1.09121 1.30720 1.35020 1.26824 0.95500 1.04709 0.91156 0.85160 0.79044 0.75650 0.79593 1.18551 1.19228 1.18111 1.19896 0.98450 0.92489 1.41673 0.90430 1.18025 0.91818 0.93191 0.89050 1.21162 1.04613 0.93049 1.07530 1.20676 0.95062 0.97071 0.96360 1.18793 1.00391 0.92823 1.08346 1.21879 0.96564 0.97896 0.97769 1.87594 1.46166 1.33864 1.42466 1.23400 1.01067 0.95359 1.02452 1.21324 0.96020 0.97718 0.98511 1.21547 0.97523 0.95635 0.99073 1.21195 0.97305 0.97506 0.94704 1.22281 0.98718 1.01667 0.96266 1.22683 0.94476 0.88779 0.96083 1.87895 1.74139 1.35372 1.35242 1.22738 0.94422 1.01693 0.83383 1.22218 0.99021 0.97703 0.99522 1.20752 0.98140 0.92451 0.99236 1.21261 1.00428 0.96985 1.02435 0.90008 0.88298 0.86610 0.89335 0.89806 0.89564 0.89656 0.91920 0.91513 0.91337 0.90823 0.91047 0.91446 0.90583 0.92783 0.88348 0.92725 0.87864 0.89528 0.91345 0.87736 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.65 10.95 21.83 0.24 -43.42 16 2 C 0.03 1.70 5.14 85.26 0.44 2.14 16 3 Si 0.99 38.33 29.60 68.60 2.03 40.36 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.50 -27.09 9.05 23.46 0.21 -26.88 16 8 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 9 C 0.08 4.53 5.57 -21.29 -0.12 4.41 16 10 C -0.24 -12.22 9.80 22.73 0.22 -12.00 16 11 C -0.07 -3.19 9.67 22.22 0.21 -2.98 16 12 C -0.20 -8.58 5.16 -19.68 -0.10 -8.68 16 13 C 0.01 0.19 6.06 71.23 0.43 0.62 16 14 S -0.33 -10.83 21.72 -56.49 -1.23 -12.05 16 15 C -0.07 -1.62 5.94 71.98 0.43 -1.19 16 16 C -0.10 -1.80 4.99 30.59 0.15 -1.65 16 17 C -0.10 -1.35 4.69 30.59 0.14 -1.20 16 18 C -0.09 -1.17 2.27 -10.68 -0.02 -1.19 16 19 C -0.15 -2.18 5.10 30.68 0.16 -2.03 16 20 C 0.06 0.83 6.84 72.01 0.49 1.32 16 21 O -0.41 -7.23 10.77 -148.98 -1.60 -8.84 16 22 C 0.05 0.68 6.84 72.01 0.49 1.17 16 23 C -0.15 -1.70 5.42 30.68 0.17 -1.53 16 24 C -0.09 -4.05 9.67 22.22 0.21 -3.83 16 25 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 26 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 27 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.09 2.59 8.08 -2.39 -0.02 2.58 16 30 H 0.08 2.54 8.08 -2.39 -0.02 2.52 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.33 6.66 -2.39 -0.02 1.31 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.13 6.75 -2.39 -0.02 1.11 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 47 H 0.10 5.70 6.16 -2.92 -0.02 5.68 16 Total: -1.00 -61.60 387.22 4.08 -57.53 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.92 Total: 30.00 kcal Atomic # 6 Polarization: -67.30 SS G_CDS: 3.72 Total: -63.58 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.24 Total: -43.42 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -1.60 Total: -8.84 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.23 Total: -12.05 kcal Total: -61.60 4.08 -57.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579794362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.772 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds