Wall clock time and date at job start Tue Mar 31 2020 12:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00140 * 2 1 4 4 O 1.20825 * 119.99920 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00029 * 179.97438 * 3 2 1 6 6 C 1.50707 * 109.46847 * 180.02562 * 5 3 2 7 7 C 1.38119 * 119.57322 * 125.02705 * 6 5 3 8 8 C 1.38800 * 119.30670 * 179.97438 * 7 6 5 9 9 C 1.38401 * 118.49222 * 359.72531 * 8 7 6 10 10 C 1.38996 * 119.10338 * 0.51194 * 9 8 7 11 11 N 1.39410 * 119.69519 * 179.75406 * 10 9 8 12 12 C 1.34777 * 120.00202 * 185.06471 * 11 10 9 13 13 O 1.21283 * 119.99518 * 354.91939 * 12 11 10 14 14 C 1.50698 * 120.00156 * 174.64225 * 12 11 10 15 15 C 1.52999 * 109.47059 * 180.28153 * 14 12 11 16 16 C 1.53003 * 109.47045 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47045 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47059 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00200 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00006 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47179 * 120.00370 * 22 20 18 25 25 H 1.48507 * 109.46899 * 240.00295 * 22 20 18 26 26 N 1.31902 * 119.57578 * 304.99631 * 6 5 3 27 27 H 1.08999 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47212 * 299.99679 * 1 2 3 29 29 H 1.08997 * 109.47018 * 60.00178 * 1 2 3 30 30 H 1.08996 * 109.47061 * 60.00038 * 5 3 2 31 31 H 1.08997 * 109.47366 * 299.99564 * 5 3 2 32 32 H 1.07993 * 120.34875 * 359.96813 * 7 6 5 33 33 H 1.07994 * 120.75392 * 180.02562 * 8 7 6 34 34 H 1.08000 * 120.44702 * 180.26128 * 9 8 7 35 35 H 0.96998 * 120.00060 * 5.07132 * 11 10 9 36 36 H 1.09003 * 109.46872 * 300.27367 * 14 12 11 37 37 H 1.08999 * 109.46909 * 60.27682 * 14 12 11 38 38 H 1.09008 * 109.46886 * 299.99728 * 15 14 12 39 39 H 1.08999 * 109.47644 * 59.99979 * 15 14 12 40 40 H 1.09003 * 109.46702 * 299.99102 * 16 15 14 41 41 H 1.08999 * 109.47093 * 59.99425 * 16 15 14 42 42 H 1.09008 * 109.46886 * 299.99512 * 17 16 15 43 43 H 1.08999 * 109.47644 * 59.99763 * 17 16 15 44 44 H 0.97000 * 120.00660 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9936 2.7200 0.0011 7 6 4.8477 3.1780 0.9852 8 6 5.2380 4.5100 0.9801 9 6 4.7578 5.3349 -0.0221 10 6 3.8973 4.8072 -0.9777 11 7 3.4021 5.6283 -1.9897 12 6 2.4889 5.1510 -2.8585 13 8 2.1663 3.9826 -2.8181 14 6 1.8641 6.0705 -3.8759 15 6 0.8643 5.2852 -4.7270 16 6 0.2304 6.2186 -5.7604 17 6 -0.7690 5.4331 -6.6119 18 6 -1.3938 6.3526 -7.6294 19 1 -1.1071 7.3933 -7.6648 20 6 -2.3315 5.8654 -8.5150 21 7 -2.6810 4.5983 -8.4716 22 14 -3.1054 7.0051 -9.7766 23 1 -2.5464 8.3717 -9.6180 24 1 -2.8100 6.5043 -11.1431 25 1 -4.5756 7.0453 -9.5712 26 7 3.5476 3.5311 -0.9386 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 5.2079 2.5069 1.7507 33 1 5.9053 4.8928 1.7381 34 1 5.0445 6.3755 -0.0588 35 1 3.7148 6.5431 -2.0686 36 1 1.3466 6.8815 -3.3633 37 1 2.6419 6.4841 -4.5178 38 1 1.3817 4.4741 -5.2396 39 1 0.0865 4.8716 -4.0850 40 1 -0.2870 7.0298 -5.2481 41 1 1.0084 6.6318 -6.4023 42 1 -0.2513 4.6221 -7.1242 43 1 -1.5470 5.0196 -5.9703 44 1 -3.3404 4.2554 -9.0949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588714240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:13 Heat of formation + Delta-G solvation = -91.187677 kcal Electronic energy + Delta-G solvation = -25927.429094 eV Core-core repulsion = 22037.984695 eV Total energy + Delta-G solvation = -3889.444398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09797 -40.28151 -39.11546 -36.51952 -35.31751 -34.72966 -33.13440 -32.63782 -31.77567 -29.81856 -28.90322 -27.23686 -25.79848 -23.86995 -23.14687 -22.06487 -21.02959 -20.20886 -19.92647 -17.88715 -17.66924 -17.08092 -16.59992 -16.57222 -16.29036 -16.12763 -15.77694 -15.48811 -14.63834 -14.46863 -14.29528 -13.94695 -13.70524 -13.57503 -13.26225 -13.19264 -12.60707 -12.43451 -12.32052 -12.15669 -12.06824 -11.68025 -11.56945 -10.98554 -10.82083 -10.81629 -10.51128 -10.47692 -10.46028 -10.39145 -10.14109 -9.95104 -9.58386 -9.29356 -9.04874 -8.91906 -8.41456 -8.28647 -5.93175 -3.95574 0.80184 1.12521 2.24523 2.58552 2.75838 2.83879 3.34493 3.41515 3.45595 3.72466 3.89816 4.36672 4.50663 4.69395 4.70989 4.78347 4.87605 4.93348 5.04727 5.07494 5.13889 5.16933 5.32070 5.37760 5.38213 5.42314 5.50546 5.66819 5.87481 5.89418 6.04038 6.16346 6.32036 6.35249 6.54265 6.62004 6.86858 7.02976 7.11073 7.23718 7.76320 7.76935 7.92098 7.92967 8.08603 8.32820 8.50279 9.12420 9.67966 11.18242 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.002464 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.281024 B =11359.198947 C =13084.259013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.366 6.366 3 C 0.461 3.539 4 O -0.476 6.476 5 C -0.059 4.059 6 C 0.163 3.837 7 C -0.201 4.201 8 C -0.047 4.047 9 C -0.211 4.211 10 C 0.372 3.628 11 N -0.668 5.668 12 C 0.497 3.503 13 O -0.458 6.458 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.109 4.109 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.452 5.452 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.416 0.584 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.855 -3.738 23.751 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.283 6.283 3 C 0.301 3.699 4 O -0.360 6.360 5 C -0.097 4.097 6 C 0.023 3.977 7 C -0.222 4.222 8 C -0.073 4.073 9 C -0.235 4.235 10 C 0.140 3.860 11 N -0.316 5.316 12 C 0.284 3.716 13 O -0.324 6.324 14 C -0.176 4.176 15 C -0.142 4.142 16 C -0.147 4.147 17 C -0.018 4.018 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 N -0.166 5.166 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.252 0.748 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.590 -4.698 22.937 29.285 hybrid contribution 0.046 1.525 -0.140 1.532 sum 17.636 -3.174 22.797 28.997 Atomic orbital electron populations 1.23247 0.76043 1.03500 1.02819 1.86440 1.23652 1.33461 1.84756 1.23186 0.91429 0.81640 0.73664 1.90756 1.66585 1.36014 1.42620 1.20173 0.89343 0.93378 1.06794 1.20348 0.92743 0.94065 0.90504 1.21743 1.02474 0.97001 1.01032 1.21268 0.96674 0.92880 0.96479 1.21498 1.02906 1.01669 0.97407 1.18476 0.90929 0.88457 0.88139 1.43920 1.42961 1.15376 1.29311 1.21403 0.78655 0.89907 0.81660 1.90834 1.57242 1.16842 1.67528 1.21819 1.00424 0.98753 0.96569 1.21465 0.97083 0.98389 0.97218 1.21643 0.98902 0.97863 0.96298 1.19100 0.93352 0.95295 0.94017 1.21322 1.22461 0.95921 1.16015 0.92705 1.25048 0.96861 0.95038 0.97683 1.69986 1.32647 1.13330 1.37519 0.86557 0.79094 0.81042 0.81418 1.19784 1.21053 1.21063 1.67376 1.22550 1.02353 1.24341 0.88188 0.92160 0.91466 0.85785 0.86148 0.84671 0.84388 0.84630 0.74765 0.88948 0.88980 0.91749 0.91730 0.93459 0.93449 0.96586 0.96595 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -4.33 10.57 -39.25 -0.41 -4.74 16 3 C 0.46 6.12 7.89 36.00 0.28 6.40 16 4 O -0.48 -8.34 15.08 -18.75 -0.28 -8.62 16 5 C -0.06 -0.55 6.21 -29.03 -0.18 -0.73 16 6 C 0.16 1.89 5.76 -82.60 -0.48 1.42 16 7 C -0.20 -1.66 9.71 -39.42 -0.38 -2.05 16 8 C -0.05 -0.35 10.17 -39.31 -0.40 -0.75 16 9 C -0.21 -1.86 9.94 -39.24 -0.39 -2.25 16 10 C 0.37 4.72 7.42 -154.69 -1.15 3.57 16 11 N -0.67 -7.77 5.39 -11.43 -0.06 -7.83 16 12 C 0.50 7.62 7.79 -10.99 -0.09 7.54 16 13 O -0.46 -9.18 14.25 5.55 0.08 -9.10 16 14 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 15 C -0.10 -1.93 4.50 -26.73 -0.12 -2.05 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 19 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.92 13.29 55.43 0.74 -27.18 16 22 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 N -0.45 -6.81 6.75 -8.60 -0.06 -6.87 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 29 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.12 0.61 7.86 -51.93 -0.41 0.21 16 32 H 0.14 0.67 7.94 -52.49 -0.42 0.25 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.42 2.97 8.70 -40.82 -0.36 2.62 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.28 8.10 -51.92 -0.42 0.86 16 39 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -40.21 380.80 -8.60 -48.81 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.64 Total: -1.82 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.68 Total: -5.53 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.62 Total: -41.88 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.62 Total: -22.47 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -40.21 -8.60 -48.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588714240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.380 kcal (2) G-P(sol) polarization free energy of solvation -40.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds